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Impacts of Waste from Concentrated Animal Feeding Operations on Water Quality

JoAnn Burkholder, Bob Libra, Peter Weyer and 4 more

Environmental Health Perspectives · 2006 · Public domain

doi:10.1289/ehp.8839

Abstract

Waste from agricultural livestock operations has been a long-standing concern with respect to contamination of water resources, particularly in terms of nutrient pollution. However, the recent growth of concentrated animal feeding operations (CAFOs) presents a greater risk to water quality because of both the increased volume of waste and to contaminants that may be present (e.g., antibiotics and other veterinary drugs) that may have both environmental and public health importance. Based on available data, generally accepted livestock waste management practices do not adequately or effectively protect water resources from contamination with excessive nutrients, microbial pathogens, and pharmaceuticals present in the waste. Impacts on surface water sources and wildlife have been documented in many agricultural areas in the United States. Potential impacts on human and environmental health from long-term inadvertent exposure to water contaminated with pharmaceuticals and other compounds are a growing public concern. This work-group, which is part of the Conference on Environmental Health Impacts of Concentrated Animal Feeding Operations: Anticipating Hazards—Searching for Solutions, identified needs for rigorous ecosystem monitoring in the vicinity of CAFOs and for improved characterization of major toxicants affecting the environment and human health. Last, there is a need to promote and enforce best practices to minimize inputs of nutrients and toxicants from CAFOs into freshwater and marine ecosystems.

Full text

From PubMed Central, U.S. National Library of Medicine, as current on Oct 21, 2026. Paragraph numbers are ours, so an answer can point at one.

Concentrated animal feed operations and water quality

Animal cultivation in the United States produces 133 million tons of manure per year (on a dry weight basis) representing 13-fold more solid waste than human sanitary waste production. Since the 1950s (poultry) and the 1970s–1980s (cattle, swine), most animals are now produced for human consumption in concentrated animal feeding operations (CAFOs). In these industrialized operations, the animals are held throughout their lives at high densities in indoor stalls until they are transported to processing plants for slaughter. There is substantial documentation of major, ongoing impacts on aquatic resources from CAFOs, but many gaps in understanding remain.

Contaminants detected in waste and risk of water contamination

Contaminants from animal wastes can enter the environment through pathways such as through leakage from poorly constructed manure lagoons, or during major precipitation events resulting in either overflow of lagoons and runoff from recent applications of waste to farm fields, or atmospheric deposition followed by dry or wet fallout. The magnitude and direction of transport depend on factors such as soil properties, contaminant properties, hydraulic loading characteristics, and crop management practices. Many contaminants are present in livestock wastes, including nutrients, pathogens, veterinary pharmaceuticals, heavy metals [especially zinc and copper; e.g.,; ], and naturally excreted hormones. Antibiotics are used extensively not only to treat or prevent microbial infection in animals, but are also commonly used to promote more rapid growth in livestock. In addition, pesticides such as dithiocarbamates are applied to sprayfields. Although anaerobic digestion of wastes in surface storage lagoons can effectively reduce or destroy many pathogens, substantial remaining densities of microbial pathogens in waste spills and seepage can contaminate receiving surface- and ground-waters (e.g.,; ). Pharmaceuticals can remain present as parent compounds or degradates in manure and leachates even during prolonged storage. Improper disposal of animal carcasses and abandoned livestock facilities can also contribute to water quality problems. Siting of livestock operations in areas prone to flooding or where there is a shallow water table increases the potential for environmental contamination.

The nutrient content of the wastes can be a desirable factor for land application as fertilizer for row crops, but overapplication of livestock wastes can overload soils with both macronutrients such as nitrogen (N) and phosphorous (P), and heavy metals added to feed as micronutrients (e.g., ). Overapplication of animal wastes or application of animal wastes to saturated soils can also cause contaminants to move into receiving waters through runoff and to leach through permeable soils to vulnerable aquifers. Importantly, this may happen even at recommended application rates. As examples, found 3–6 mg nitrate (NO3)/L in surface runoff from sprayfields that received swine effluent at recommended rates; measured 6–8 mg total inorganic N/L and 0.7–1.3 mg P/L in a stream adjacent to swine effluent sprayfields. reported 7–30 mg NO3/L in subsurface flow draining a sprayfield for swine wastes, applied at recommended rates. described export rates of up to 0.52 kg ammonium m−2 year−1 from lagoon seepage; reported that groundwater near swine waste lagoons averaged 143 mg inorganic N/L, and estimated export rates at 4.5 kg inorganic N/day. Thus, nutrient losses into receiving waters can be excessive relative to levels (~ 100–200 μg inorganic N or P/L) known to support noxious algal blooms. In addition to contaminant chemical properties, soil properties and climatic conditions can affect transport of contaminants. For example, sandy, well-drained soils are most vulnerable to transport of nutrients to underlying groundwater. Nutrients can also readily move through soils under wet conditions.

Presence of contaminants in water sources

The presence of many contaminants from livestock waste has been documented in both surface water and groundwater supplies in agricultural areas within the United States (e.g.,;; ). Urban wastewater streams also contain these contaminants, and efforts to accurately determine sources of contamination are under way (;; Kolpin DW, unpublished data). The U.S. Geological Survey (USGS) began pilot surveillance programs for organic wastewater contaminants in 1999 and expanded that effort to a national scale over the past 5 years. Recent USGS efforts have focused specifically on water quality in agricultural locations (Kolpin DW, unpublished data). Nutrient levels have been detected in high parts per million (milligrams per liter) levels; pharmaceuticals and other compounds are generally measured in low levels (ppb [micrograms per liter]). In Europe, surveillance efforts conducted in Germany documented the presence of veterinary pharmaceuticals in water resources.

Animal wastes are also rich in organics and high in biochemical oxygen-demanding materials (BOD); for example, treated human sewage contains 20–60 mg BOD/L, raw sewage contains 300–400 mg BOD/L, and swine waste slurry contains 20,000–30,000 mg BOD/L. Animal wastes also carry parasites, viruses, and bacteria as high as 1 billion/g. Swine wastes contain > 100 microbial pathogens that can cause human illness and disease [see review in ]. About one-third of the antibiotics used in the United States each year is routinely added to animal feed to increase growth. This practice is promoting increased antibiotic resistance among the microbial populations present and, potentially, increased resistance of naturally occurring pathogens in surface waters that receive a portion of the wastes.

Contaminant impacts

Some contaminants pose risks for adverse health impacts in wildlife or humans. The effects of numerous waterborne pathogens on humans are well known, although little is known about potential impacts of such microorganisms on aquatic life. With respect to nutrients, excessive phosphorus levels can contribute to algal blooms and cyanobacterial growth in surface waters used for recreation and as sources of drinking water. Research is beginning to investigate the environmental effects, including endocrine disruption and antibiotic resistance issues. However, knowledge is limited in several crucial areas. These areas include information on metabolites or environmental degradates of some parent compounds; the environmental persistence, fate, and transport and toxicity of metabolites or degradates; the potential synergistic effects of various mixtures of contaminants on target organisms; and the potential transport and effects from natural and synthetic hormones. Further, limited monitoring has been conducted of ecosystem health in proximity to CAFOs, including monitoring the effects on habitats from lagoon spills during catastrophic flooding.

Ecologic and wildlife impacts

Anoxic conditions and extremely high concentrations of ammonium, total phosphorus, suspended solids, and fecal coliform bacteria throughout the water column for approximately 30 km downstream from the point of entry have been documented as impacts of waste effluent spills from CAFOs. Pathogenic microorgan-isms such as Clostridium perfringens have been documented at high densities in receiving surface waters following CAFO waste spills. These degraded conditions, especially the associated hypoxia/anoxia and high ammonia, have caused major kills of freshwater fish of all species in the affected areas, from minnows and gar to largemouth bass, and estuarine fish, including striped bass and flounder. Waste effluent spills also stimulated blooms of toxic and noxious algae. In freshwaters, these blooms include toxic and noxious cyanobacteria while in estuaries, harmful haptophytes and toxic dinoflagellates arise. Most states monitor only water-column fecal coliform densities to assess whether waterways are safe for human contact. World Health Organization (WHO) guidelines for cyanobacteria in recreational water are 20,000 cyanobacterial cells/mL, which indicates low probability of adverse health effects, and 100,000 cyanobacterial cells/mL, which indicates moderate probability of adverse health effects. Yet fecal bacteria and other pathogenic microorganisms typically settle out to the sediments where they can thrive at high densities for weeks to months following CAFO waste effluent spills.

The impacts from CAFO pollutant loadings to direct runoff are more substantial after such major effluent spills or when CAFOs are flooded and in direct contact with surface waters. Although the acute impacts are often clearly visible—dead fish floating on the water surface, or algal overgrowth and rotting biomass—the chronic, insidious, long-term impacts of commonly accepted practices of CAFO waste management on receiving aquatic ecosystems are also significant. One purpose of manure storage basins is to reduce the N content of the manure through volatilization of ammonia and other N-containing molecules. Many studies have shown, for example, that high nutrient concentrations (e.g., ammonia from swine CAFOs, or ammonia oxidized to NO3, or phosphorus from poultry CAFOs) commonly move off-site to contaminate the overlying air and/or adjacent surface and sub-surface waters. Inorganic N forms are added to the atmosphere during spray practices, and both ammonia and phosphate can also adsorb to fine particles (dust) that can be airborne. The atmospheric depositions are noteworthy, considering that a signifi-cant proportion of the total ammonium from uncovered swine effluent lagoons and effluent spraying (an accepted practice in some states) reenters surface waters as local precipitation or through dry fallout. The contributed nutrient concentrations from the effluent greatly exceed the minimal levels that have been shown to promote noxious algal blooms and depress the growth of desirable aquatic habitat species. The resulting chronically degraded conditions of nutrient overenrichment, while not as extreme as during a major waste spill, stimulate algal blooms and long-term shifts in phytoplankton community structure from desirable species (e.g., diatoms) to noxious species.

A summary of the findings from a national workshop on environmental impacts of CAFOs a decade ago stated that there was “a surprising lack of information about environmental impacts of CAFOs to adjacent lands and receiving waters” (Thu K, Donham K, unpublished data). Although the knowledge base has expanded since that time, especially regarding adverse effects of inorganic N and P overenrichment and anoxia, impacts of many CAFO pollutants on receiving aquatic ecosystems remain poorly understood. As examples, there is poor understanding of the impacts of fecal bacteria and other microbial pathogens from CAFO waste effluent contamination on aquatic communities; impacts of antibiotic-resistant bacteria created from CAFO wastes on aquatic life; impacts of organic nutrient forms preferred by certain noxious plankton; impacts from the contributed pesticides and heavy metals; and impacts from these pollutants acting in concert, additively or synergistically. This lack of information represents a critical gap in our present ability to assess the full extent of CAFO impacts on aquatic natural resources.

Despite their widespread use, antibiotics have only recently received attention as environmental contaminants. Most antibiotics are designed to be quickly excreted from the treated organism. Thus, it is not surprising that antibiotics are commonly found in human and animal waste and in water resources affected by sources of waste. Although some research has been conducted on the environmental effects from antibiotics (e.g.,; ), much is yet to be understood pertaining to long-term exposures to low levels of antibiotics (both individually and as part of complex mixtures of organic contaminants in the environment). The greatest risks appear to be related to antibiotic resistance and natural ecosystem functions such as soil microbial activity and bacterial denitrification.

Human health impacts

Exposure to waterborne contaminants can result from both recreational use of affected surface water and from ingestion of drinking water derived from either contaminated surface water or groundwater. High-risk populations are generally the very young, the elderly, pregnant women, and immunocompromised individuals. Recreational exposures and illnesses include accidental ingestion of contaminated water that may result in diarrhea or other gastrointestinal tract distress from waterborne pathogens, and dermal contact during swimming that may cause skin, eye, or ear infections. Drinking water exposures to pathogens could occur in vulnerable private wells; under normal circumstances community water utilities disinfect water sufficiently before distribution to customers. Cyanobacteria (blue–green algae) in surface water can produce toxins (e.g., microcystins) that are known neuro-toxins and hepatotoxins. Acute and chronic health impacts from these toxins can occur from exposures to both raw water and treated water. Removal of cyanotoxins during drinking water treatment is a high priority for the drinking water industry. The WHO has set a provisional drinking water guideline of 1 μg microcystin-LR/L. While there are no drinking water standards in the United States for cyanobacte-ria, they are on the U.S. EPA Unregulated Contaminant Monitoring Rule List 3.

Exposure to chemical contaminants can occur in both private wells and community water supplies, and may present health risks. High nitrate levels in water used in mixing infant formula have been associated with risk for methemoglobinemia (blue-baby syndrome) in infants under 6 months of age, although other health factors such as diarrhea and respiratory disease have also been implicated. The U.S. EPA drinking water standard of 10 mg/L NO3–N and the WHO guideline of 11 mg/L NO3–N were set because of concerns about methemo-globinemia. (Note: “nitrate” refers to nitrate–nitrogen). Epidemiologic studies of noncancer health outcomes and high nitrate levels in drinking water have reported an increased risk of hyperthyroidism from long-term exposure to levels between 11–61 mg/L. Drinking water nitrate at levels < 10 mg/L has been associated with insulin-dependent diabetes (IDDM; ), whereas other studies have shown an association with IDDM at nitrate levels > 15 mg/L and > 25 mg/L. Increased risks for adverse reproductive outcomes, including central nervous system malformations and neural tube defects, have been reported for drinking water nitrate levels < 10 mg/L.

Anecdotal reports of reproductive effects of nitrate in drinking water include a case study of spontaneous abortions in women consuming high nitrate water (19–26 mg/L) from private wells.

While amassing experimental data suggest a role for nitrate in the formation of carcinogenic N-nitroso compounds, clear epidemio-logic findings are lacking on the possible association of nitrate in drinking water with cancer risk. Ecologic studies have reported mixed results for cancers of the stomach, bladder, and esophagus and non-Hodgkin lymphoma, positive findings for cancers of the nasopharynx, prostate, uterus, and brain, and negative findings for ovarian cancer. Positive findings have generally been for long-term exposures at > 10 mg/L nitrate. Case–control studies have reported mixed results for stomach cancer; positive results for non-Hodgkin lymphoma at > 4 mg/L nitrate and colon cancer at > 5 mg/L; and negative results for cancers of the brain, bladder, and rectum, all at < 10 mg/L. Cohort studies have reported no association between nitrate in drinking water and stomach cancer; positive associations with cancers of the bladder and ovary at long-term exposures > 2.5 mg/L; and inverse associations with cancers of the rectum and uterus, again at > 2.5 mg/L.

Exposure to low levels of antibiotics and other pharmaceuticals in drinking water (generally at micrograms per liter or nanograms per liter) represent unintentional doses of substances generally used for medical purposes to treat active disease or prevent disease. The concern is more related to possible cumulative effects of long-term low-dose exposures than on acute health effects. A recent study conducted in Germany found that the margin between indirect daily exposure via drinking water and daily therapeutic dose was at least three orders of magnitude, concluding that exposure to pharmaceuticals via drinking water is not a major health concern. It should be noted that when prescribing medications, providers ensure patients are not taking incompatible drugs, but exposure via drinking water is beyond their control.

Endocrine-disrupting compounds are chemicals that exhibit biological hormonal activity, either by mimicking natural estrogens, by canceling or blocking hormonal actions, or by altering how natural hormones and their protein receptors are made. Although very low levels of estrogenic compounds can stimulate cell activity, the potential for human health effects, such as breast and prostate cancers, and reproductive effects from exposure to endocrine disruptors, is in debate.

Priority research needs

Ecosystems monitoring: Systematic sustained studies of ecosystem health in proximity to large CAFOs are needed, including effects of input spikes during spills or flooding events.

Toxicologic assessment of contaminants: Identification and prioritization of contaminants are needed to identify those that are most significant to environmental and public health. Toxicity studies need to be conducted to identify and quantify contaminants (including metabolites), and to investigate interactions (synergistic, additive, and antagonistic effects).

Fate and transport: Studies of parent compounds and metabolites in soil and water must be conducted, and the role of sediment as a carrier and reservoir of contaminants must be evaluated.

Surveillance programs: Programs should be instituted to assess private well water quality in high-risk areas. Biomonitoring programs should be designed and implemented to assess actual dose from environmental exposures.

Translation of science to policy

Wastewater and drinking water treatment: Processes for water treatment must be monitored to ensure adequate removal or inactivation of emerging contaminants.

Pollution prevention: Best management practices should be implemented to prevent or minimize release of contaminants into the environment.

Education: Educational materials should be continued to be developed and distributed to agricultural producers.

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