Chloroplast genomes: diversity, evolution, and applications in genetic engineering

Abstract

Chloroplasts play a crucial role in sustaining life on earth. The availability of over 800 sequenced chloroplast genomes from a variety of land plants has enhanced our understanding of chloroplast biology, intracellular gene transfer, conservation, diversity, and the genetic basis by which chloroplast transgenes can be engineered to enhance plant agronomic traits or to produce high-value agricultural or biomedical products. In this review, we discuss the impact of chloroplast genome sequences on understanding the origins of economically important cultivated species and changes that have taken place during domestication. We also discuss the potential biotechnological applications of chloroplast genomes.

References 320

1. 1.
   Chloroplast signaling within, between and beyond cells · 2015

   No notice
2. 2.

   This reference’s wording can’t be shown under the paper’s licence.

   Not in our library10.1146/annurev-genet-120215-035349

3. 3.

   This reference’s wording can’t be shown under the paper’s licence.

   Not in our library10.1002/j.1460-2075.1986.tb04464.x

4. 4.

   This reference’s wording can’t be shown under the paper’s licence.

   Not in our library10.1038/srep13957

5. 5.

   This reference’s wording can’t be shown under the paper’s licence.

   Not in our library10.1111/pbi.12454

6. 6.

   This reference’s wording can’t be shown under the paper’s licence.

   Not in our library10.1016/j.biomaterials.2015.08.004

7. 7.

   This reference’s wording can’t be shown under the paper’s licence.

   Not in our library10.1016/j.ympev.2008.06.013

8. 8.

   This reference’s wording can’t be shown under the paper’s licence.

   Not in our library10.1007/s00122-007-0567-4

9. 9.

   This reference’s wording can’t be shown under the paper’s licence.

   Not in our library10.1186/1471-2164-7-222

10. 10.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library10.1111/j.1467-7652.2007.00245.x

11. 11.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library10.1186/1471-2164-7-61

12. 12.
    The complete chloroplast genome sequence of Citrus sinensis(L.) Osbeck var 'Ridge Pineapple': organization and phylogenetic relationships to other angiosperms · 2006

    No notice
13. 13.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library10.1007/s00122-006-0254-x

14. 14.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library10.1093/molbev/msq261

15. 15.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library10.1073/pnas.89.22.10648

16. 16.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library10.1186/1756-0500-1-61

17. 17.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library10.1093/dnares/6.5.283

18. 18.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library10.1007/s11103-005-8882-0

19. 19.
    Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids · 2006

    No notice
20. 20.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library10.1007/s00122-007-0706-y

21. 21.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library10.3389/fpls.2012.00243

22. 22.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library10.1046/j.1471-8278.2001.00107.x

23. 23.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library10.1007/s00606-003-0056-4

24. 24.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library10.1093/molbev/msh147

25. 25.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library10.1093/molbev/msg159

26. 26.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library10.1186/1471-2164-6-176

27. 27.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library10.1186/1746-4811-3-4

28. 28.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library10.1093/treephys/tpp015

29. 29.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library10.1007/s00239-009-9275-9

30. 30.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library10.1093/gbe/evt063

31. 31.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library10.1007/s00239-008-9091-7

32. 32.
    The location and translocation of ndh genes of chloroplast origin in the Orchidaceae family · 2015

    No notice
33. 33.
    Rapid and accurate pyrosequencing of angiosperm plastid genomes. · 2006

    No notice
34. 34.
    High-Throughput Sequencing of Three Lemnoideae (Duckweeds) Chloroplast Genomes from Total DNA · 2011

    No notice
35. 35.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library10.1093/nar/gkn502

36. 36.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library10.1371/journal.pone.0034738

37. 37.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library10.1186/1746-4811-6-22

38. 38.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library10.1093/gbe/evv244

39. 39.
    An evaluation of the PacBio RS platform for sequencing and de novo assembly of a chloroplast genome · 2013

    No notice
40. 40.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library10.1186/s12870-014-0289-0

Cited by papers we hold 12

• The complete chloroplast genome sequence of Graptopetalum paraguayense (N. E. Br.) walth.1938 and phylogenetic analysis · 2025
  Not checked
• Comparative analysis of the complete plastid genomes in Prunus subgenus Cerasus (Rosaceae): Molecular structures and phylogenetic relationships. · 2022
  Not checked
• Plastome Phylogenomics of Aucuba (Garryaceae) · 2022
  Not checked
• Characterization of the chloroplast genome of Lonicera ruprechtiana Regel and comparison with other selected species of Caprifoliaceae. · 2022
  Not checked
• Mutational Dynamics of Aroid Chloroplast Genomes II · 2021
  Not checked
• Characterization of sequence variability hotspots in Cranichideae plastomes (Orchidaceae, Orchidoideae). · 2020
  Not checked
• Therapeutic recombinant protein production in plants: Challenges and opportunities · 2020
  Not checked
• Twelve complete chloroplast genomes of wild peanuts: great genetic resources and a better understanding of Arachis phylogeny · 2019
  Not checked
• Developing Chloroplast Genomic Resources from 25 <i>Avena</i> Species for the Characterization of Oat Wild Relative Germplasm · 2019
  Not checked
• CPGAVAS2, an integrated plastome sequence annotator and analyzer · 2019
  No notice
• PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes · 2019
  No notice
• Plastome phylogeny and early diversification of Brassicaceae · 2017
  No notice

Reads

A person counts once a day per paper. We keep no cookie and no address: a reader is a hash that changes every day. Any month under five reads shows no number.