The Evolutionary Kaleidoscope of Rhodopsins

The rhodopsin scaffold is remarkably versatile and widespread, coupling light availability to energy production and other light-dependent cellular responses with minor alterations to critical residues. We described an unprecedented spectrum of substitutions at one of the most conserved amino acids in the rhodopsin fold, Arg82.

Abstract licence: CC BY

1. 3.

   The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides · 2015

2. 11.

   The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing · 2014

3. 32.

   Accelerated Profile HMM Searches · 2011

4. 33.

   Prodigal: prokaryotic gene recognition and translation initiation site identification · 2010

5. 41.

   Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines · 2016

6. 49.

   A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments · 2018

7. 50.
   Corrected

   Marine microbial metagenomes sampled across space and time · 2018

8. 51.

   The Pfam protein families database in 2019 · 2018

9. 64.

   IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era · 2020

10. 71.

    The InterPro protein families and domains database: 20 years on · 2020

11. 73.
    Corrected

    A genomic catalog of Earth’s microbiomes · 2020

12. 74.

    UniProt: the universal protein knowledgebase in 2021 · 2020

13. 80.

    A phylogenomic framework for charting the diversity and evolution of giant viruses · 2021

14. 81.

    Highly accurate protein structure prediction with AlphaFold · 2021

15. 89.

    ColabFold: making protein folding accessible to all · 2022

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