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Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre‐harvest sprouting and photo‐oxidation in rice
Jun Fang, Chenglin Chai, Qian Qian and 15 more
The Plant Journal · 2008
doi:10.1111/j.1365-313x.2008.03411.x
Abstract
Summary Pre‐harvest sprouting (PHS) or vivipary in cereals is an important agronomic trait that results in significant economic loss. A considerable number of mutations that cause PHS have been identified in several species. However, relatively few viviparous mutants in rice ( Oryza sativa L.) have been reported. To explore the mechanism of PHS in rice, we carried out an extensive genetic screening and identified 12 PHS mutants ( phs ). Based on their phenotypes, these phs mutants were classified into three groups. Here we characterize in detail one of these groups, which contains mutations in genes encoding major enzymes of the carotenoid biosynthesis pathway, including phytoene desaturase (OsPDS), ζ‐carotene desaturase (OsZDS), carotenoid isomerase (OsCRTISO) and lycopene β ‐cyclase (β‐OsLCY), which are essential for the biosynthesis of carotenoid precursors of ABA. As expected, the amount of ABA was reduced in all four phs mutants compared with that in the wild type. Chlorophyll fluorescence analysis revealed the occurrence of photoinhibition in the photosystem and decreased capacity for eliminating excess energy by thermal dissipation. The greatly increased activities of reactive oxygen species (ROS) scavenging enzymes, and reduced photosystem (PS) II core proteins CP43, CP47 and D1 in leaves of the Oscrtiso / phs3‐1 mutant and OsLCY RNAi transgenic rice indicated that photo‐oxidative damage occurred in PS II, consistent with the accumulation of ROS in these plants. These results suggest that the impairment of carotenoid biosynthesis causes photo‐oxidation and ABA‐deficiency phenotypes, of which the latter is a major factor controlling the PHS trait in rice.
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References 70
- 1.
Agrawal GK, Yamazaki M, Kobayashi M, Hirochika R, Miyao A, Hirochika H. Screening of the rice viviparous mutants generated by endogenous retrotransposon Tos17 insertion. Tagging of a zeaxanthin epoxidase gene and a novel OsTATC gene. Plant Physiol. 2001;125:1248-1257.
Not in our library10.1104/pp.125.3.1248
- 2.
Bewley JD. Seed germination and dormancy. Plant Cell. 1997;9:1055-1066.
Not in our library10.1105/tpc.9.7.1055
- 3.
Chen Z, Gallie DR. The ascorbic acid redox state controls guard cell signaling and stomatal movement. Plant Cell. 2004;16:1143-1162.
Not in our library10.1105/tpc.021584
- 4.
Clerkx EJ, El-Lithy ME, Vierling E, Ruys GJ, Blankestijn-De Vries H, Groot SP, Vreugdenhil D, Koornneef M. Analysis of natural allelic variation of Arabidopsis seed germination and seed longevity traits between the accessions Landsberg erecta and Shakdara, using a new recombinant inbred line population. Plant Physiol. 2004;135:432-443.
Not in our library10.1104/pp.103.036814
- 5.
Conti A, Pancaldi S, Fambrini M, Michelotti V, Bonora A, Salvini M, Pugliesi C. A deficiency at the gene coding for zeta-carotene desaturase characterizes the sunflower non dormant-1 mutant. Plant Cell Physiol. 2004;45:445-455.
Not in our library10.1093/pcp/pch052
- 6.
Cunningham FX, Gantt E. Genes and enzymes of carotenoid biosynthesis in plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 1998;49:557-583.
Not in our library10.1146/annurev.arplant.49.1.557
- 7.
Demmig-Adams B, Adams WW. Photoprotection and other responses of plants to high light stress. Annu. Rev. Plant Physiol. Plant Mol. Biol. 1992;43:599-626.
Not in our library
- 8.
Finch-Savage WE, Leubner-Metzger G. Seed dormancy and the control of germination. New Phytol. 2006;171:501-523.
Not in our library10.1111/j.1469-8137.2006.01787.x
- 9.
Fitzgerald HA, Chern MS, Navarre R, Ronald PC. Overexpression of (At)NPR1 in rice leads to a BTH- and environment-induced lesion-mimic/cell death phenotype. Mol. Plant Microbe Interact. 2004;17:140-151.
Not in our library10.1094/mpmi.2004.17.2.140
- 10.
Fong F, Smith JD, Koehler DE. Early events in maize seed development: 1-methyl-3-phenyl-5-(3-[trifluoromethyl]phenyl)-4-(1H)-pyridinone induction of vivipary. Plant Physiol. 1983;73:899-901.
Not in our library10.1104/pp.73.4.899
- 11.
Fraser PD, Pinto ME, Holloway DE, Bramley PM. Technical advance: application of high-performance liquid chromatography with photodiode array detection to the metabolic profiling of plant isoprenoids. Plant J. 2000;24:551-558.
Not in our library10.1046/j.1365-313x.2000.00896.x
- 12.
Fray RG, Wallace A, Fraser PD, Valero D, Hedden P, Bramley PM, Grierson D. Constitutive expression of a fruit phytoene synthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway. Plant J. 1995;8:693-701.
Not in our library
- 13.
Gazzarrini S, Tsuchiya Y, Lumba S, Okamoto M, McCourt P. The transcription factor FUSCA3 controls developmental timing in Arabidopsis through the hormones gibberellin and abscisic acid. Dev. Cell. 2004;7:373-385.
Not in our library10.1016/j.devcel.2004.06.017
- 14.
Gilmore AM. Mechanistic aspects of xanthophyll cycle-dependent photoprotection in higher plant chloroplasts and leaves. Physiol. Plant. 1997;99:197-209.
Not in our library
- 15.
Gonzalez A, Steffen KL, Lynch JP. Light and excess manganese. Implications for oxidative stress in common bean. Plant Physiol. 1998;118:493-504.
Not in our library10.1104/pp.118.2.493
- 16.
Gonzalez-Guzman M, Abia D, Salinas J, Serrano R, Rodriguez PL. Two new alleles of the abscisic aldehyde oxidase 3 gene reveal its role in abscisic acid biosynthesis in seeds. Plant Physiol. 2004;135:325-333.
Not in our library10.1104/pp.103.036590
- 17.
Green BR, Durnford DG. The chlorophyll-carotenoid proteins of oxygenic photosynthesis. Annu. Rev. Plant Physiol. Plant Mol. Biol. 1996;47:685-714.
Not in our library10.1146/annurev.arplant.47.1.685
- 18.
Groot SP, Karssen CM. Dormancy and germination of abscisic acid-deficient tomato seeds: studies with the sitiens mutant. Plant Physiol. 1992;99:952-958.
Not in our library10.1104/pp.99.3.952
- 19.
Gu XY, Kianian SF, Foley ME. Multiple loci and epistases control genetic variation for seed dormancy in weedy rice (Oryza sativa). Genetics. 2004;166:1503-1516.
Not in our library10.1534/genetics.166.3.1503
- 20.
Gu XY, Kianian SF, Foley ME. Dormancy genes from weedy rice respond divergently to seed development environments. Genetics. 2006;172:1199-1211.
Not in our library10.1534/genetics.105.049155
- 21.
Gubler F, Millar AA, Jacobsen JV. Dormancy release, ABA and pre-harvest sprouting. Curr. Opin. Plant Biol. 2005;8:183-187.
Not in our library10.1016/j.pbi.2005.01.011
- 22.
Guo L, Zhu L, Xu Y, Zeng D, Wu P, Qian Q. QTL analysis of seed dormancy in rice. Euphytica. 2004;140:155-162.
Not in our library
- 23.
Hable WE, Oishi KK, Schumaker KS. Viviparous-5 encodes phytoene desaturase, an enzyme essential for abscisic acid (ABA) accumulation and seed development in maize. Mol. Genet. Genomics. 1998;257:167-176.
Not in our library10.1007/s004380050636
- 24.
Hirayama O, Nakamura K, Hamada S, Kobayasi Y. Singlet oxygen quenching ability of naturally occurring carotenoids. Lipids. 1994;29:149-150.
Not in our library10.1007/bf02537155
- 25.
Hobo T, Kowyama Y, Hattori T. A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid-induced transcription. Proc. Natl Acad. Sci. USA. 1999;96:15348-15353.
Not in our library10.1073/pnas.96.26.15348
- 26.
Holt NE, Zigmantas D, Valkunas L, Li XP, Niyogi KK, Fleming GR. Carotenoid cation formation and the regulation of photosynthetic light harvesting. Science. 2005;307:433-436.
Not in our library10.1126/science.1105833
- 27.
Isaacson T, Ronen G, Zamir D, Hirschberg J. Cloning of tangerine from tomato reveals a carotenoid isomerase essential for the production of beta-carotene and xanthophylls in plants. Plant Cell. 2002;14:333-342.
Not in our library10.1105/tpc.010303
- 28.
Jiang M, Zhang J. Water stress-induced abscisic acid accumulation triggers the increased generation of reactive oxygen species and up-regulates the activities of antioxidant enzymes in maize leaves. J. Exp. Bot. 2002;53:2401-2410.
Not in our library10.1093/jxb/erf090
- 29.
Knöraer OC, Durner J, Böger P. Alterations in the antioxidative system of suspension-cultured soybean cells (Glycine max) induced by oxidative stress. Physiol. Plant. 1996;97:388-396.
Not in our library
- 30.
Koornneef M, Bentsink L, Hilhorst H. Seed dormancy and germination. Curr. Opin. Plant Biol. 2002;5:33-36.
Not in our library10.1016/s1369-5266(01)00219-9
- 31.
Krause GH, Weis E. Chlorophyll fluorescence and photosynthesis: the basics. Annu. Rev. Plant Physiol. Plant Mol. Biol. 1991;42:313-349.
Not in our library
- 32.
Kusumi K, Komori H, Satoh H, Iba K. Characterization of a zebra mutant of rice with increased susceptibility to light stress. Plant Cell Physiol. 2000;41:158-164.
Not in our library10.1093/pcp/41.2.158
- 33.
La Rocca N, Rascio N, Oster U, Rudiger W. Inhibition of lycopene cyclase results in accumulation of chlorophyll precursors. Planta. 2007;225:1019-1029.
Not in our library10.1007/s00425-006-0409-7
- 34.
Leon-Kloosterziel KM, Gil MA, Ruijs GJ, Jacobsen SE, Olszewski NE, Schwartz SH, Zeevaart JA, Koornneef M. Isolation and characterization of abscisic acid-deficient Arabidopsis mutants at two new loci. Plant J. 1996a;10:655-661.
Not in our library10.1046/j.1365-313x.1996.10040655.x
- 35.
Leon-Kloosterziel KM, van de Bunt GA, Zeevaart JA, Koornneef M. Arabidopsis mutants with a reduced seed dormancy. Plant Physiol. 1996b;110:233-240.
Not in our library10.1104/pp.110.1.233
- 36.
Li C, Ni P, Francki M, et al. Genes controlling seed dormancy and pre-harvest sprouting in a rice-wheat-barley comparison. Funct. Integr. Genomics. 2004;4:84-93.
Not in our library10.1007/s10142-004-0104-3
- 37.
Liu X, Bai X, Wang X, Chu C. OsWRKY71, a rice transcription factor, is involved in rice defense response. J. Plant Physiol. 2007;164:969-979.
Not in our library10.1016/j.jplph.2006.07.006
- 38.
Lu C, Lu Q, Zhang J, Kuang T. Characterization of photosynthetic pigment composition, photosystem II photochemistry and thermal energy dissipation during leaf senescence of wheat plants grown in the field. J. Exp. Bot. 2001;52:1805-1810.
Not in our library10.1093/jexbot/52.362.1805
- 39.
Luo A, Qian Q, Yin H, et al. EUI1, encoding a putative cytochrome P450 monooxygenase, regulates internode elongation by modulating gibberellin responses in rice. Plant Cell Physiol. 2006;47:181-191.
Not in our library10.1093/pcp/pci233
- 40.
Ma YZ, Holt NE, Li XP, Niyogi KK, Fleming GR. Evidence for direct carotenoid involvement in the regulation of photosynthetic light harvesting. Proc. Natl Acad. Sci. USA. 2003;100:4377-4382.
Not in our library10.1073/pnas.0736959100
- 41.
Masamoto K, Hisatomi S, Sakurai I, Gombos Z, Wada H. Requirement of carotene isomerization for the assembly of photosystem II in Synechocystis sp. PCC 6803. Plant Cell Physiol. 2004;45:1325-1329.
Not in our library10.1093/pcp/pch144
- 42.
Matthews PD, Luo R, Wurtzel ET. Maize phytoene desaturase and zeta-carotene desaturase catalyse a poly-Z desaturation pathway: implications for genetic engineering of carotenoid content among cereal crops. J. Exp. Bot. 2003;54:2215-2230.
Not in our library10.1093/jxb/erg235
- 43.
McCarty DR. Genetic control and integration of maturation and germination pathways in seed development. Annu. Rev. Plant Physiol. Plant Mol. Biol. 1995;46:71-93.
Not in our library
- 44.
Miki D, Shimamoto K. Simple RNAi vectors for stable and transient suppression of gene function in rice. Plant Cell Physiol. 2004;45:490-495.
Not in our library10.1093/pcp/pch048
- 45.
Mitsui T, Yamaguchi J, Akazawa T. Physicochemical and serological characterization of rice alpha-amylase isoforms and identification of their corresponding genes. Plant Physiol. 1996;110:1395-1404.
Not in our library10.1104/pp.110.4.1395
- 46.
Moise AR, von Lintig J, Palczewski K. Related enzymes solve evolutionarily recurrent problems in the metabolism of carotenoids. Trends Plant Sci. 2005;10:178-186.
Not in our library10.1016/j.tplants.2005.02.006
- 47.
Murashige T, Skoog F. A revised medium for rapid growth and bio assays with tobacco tissue cultures. Physiol. Plant. 1962;15:473-497.
Not in our library
- 48.
Niyogi KK. Photoprotection revisited: genetic and molecular approaches. Annu. Rev. Plant Physiol. Plant Mol. Biol. 1999;50:333-359.
Not in our library10.1146/annurev.arplant.50.1.333
- 49.
Niyogi KK, Grossman AR, Bjorkman O. Arabidopsis mutants define a central role for the xanthophyll cycle in the regulation of photosynthetic energy conversion. Plant Cell. 1998;10:1121-1134.
Not in our library10.1105/tpc.10.7.1121
- 50.
Niyogi KK, Shih C, Soon Chow W, Pogson BJ, Dellapenna D, Bjorkman O. Photoprotection in a zeaxanthin- and lutein-deficient double mutant of Arabidopsis. Photosynth. Res. 2001;67:139-145.
Not in our library10.1023/a:1010661102365
- 51.
O'Neill SD, Kumagai MH, Majumdar A, Huang N, Sutliff TD, Rodriguez RL. The alpha-amylase genes in Oryza sativa: characterization of cDNA clones and mRNA expression during seed germination. Mol. Genet. Genomics. 1990;221:235-244.
Not in our library10.1007/bf00261726
- 52.
Ono A, Izawa T, Chua NH, Shimamoto K. The rab16B promoter of rice contains two distinct abscisic acid-responsive elements. Plant Physiol. 1996;112:483-491.
Not in our library10.1104/pp.112.2.483
- 53.
Park H, Kreunen SS, Cuttriss AJ, DellaPenna D, Pogson BJ. Identification of the carotenoid isomerase provides insight into carotenoid biosynthesis, prolamellar body formation, and photomorphogenesis. Plant Cell. 2002;14:321-332.
Not in our library10.1105/tpc.010302
- 54.
Peng L, Ma J, Chi W, Guo J, Zhu S, Lu Q, Lu C, Zhang L. LOW PSII ACCUMULATION1 is involved in efficient assembly of photosystem II in Arabidopsis thaliana. Plant Cell. 2006;18:955-969.
Not in our library10.1105/tpc.105.037689
- 55.
Prada D, Ullrich SE, Molina-Cano JL, Cistue L, Clancy JA, Romagosa I. Genetic control of dormancy in a Triumph/Morex cross in barley. Theor. Appl. Genet. 2004;109:62-70.
Not in our library10.1007/s00122-004-1608-x
- 56.
Rodriguez-Concepcion M, Ahumada I, Diez-Juez E, Sauret-Gueto S, Lois LM, Gallego F, Carretero-Paulet L, Campos N, Boronat A. 1-Deoxy-d-xylulose 5-phosphate reductoisomerase and plastid isoprenoid biosynthesis during tomato fruit ripening. Plant J. 2001;27:213-222.
Not in our library10.1046/j.1365-313x.2001.01089.x
- 57.
Sagar AD, Horwitz BA, Elliott RC, Thompson WF, Briggs WR. Light effects on several chloroplast components in norflurazon-treated pea seedlings. Plant Physiol. 1988;88:340-347.
Not in our library10.1104/pp.88.2.340
- 58.
Schaub P, Al-Babili S, Drake R, Beyer P. Why is golden rice golden (yellow) instead of red? Plant Physiol. 2005;138:441-450.
Not in our library10.1104/pp.104.057927
- 59.
Schwartz SH, Qin X, Zeevaart JA. Elucidation of the indirect pathway of abscisic acid biosynthesis by mutants, genes, and enzymes. Plant Physiol. 2003;131:1591-1601.
Not in our library10.1104/pp.102.017921
- 60.
Singh M, Lewis PE, Hardeman K, Bai L, Rose JK, Mazourek M, Chomet P, Brutnell TP. Activator mutagenesis of the pink scutellum1/viviparous7 locus of maize. Plant Cell. 2003;15:874-884.
Not in our library10.1105/tpc.010249
- 61.
Takeuchi Y, Lin SY, Sasaki T, Yano M. Fine linkage mapping enables dissection of closely linked quantitative trait loci for seed dormancy and heading in rice. Theor. Appl. Genet. 2003;107:1174-1180.
Not in our library10.1007/s00122-003-1364-3
- 62.
Tracewell CA, Vrettos JS, Bautista JA, Frank HA, Brudvig GW. Carotenoid photooxidation in photosystem II. Arch. Biochem. Biophys. 2001;385:61-69.
Not in our library10.1006/abbi.2000.2150
- 63.
Wan JM, Jiang L, Tang JY, Wang CM, Hou MY, Jing W, Zhang LX. Genetic dissection of the seed dormancy trait in cultivated rice (Oryza sativa L.). Plant Sci. 2006;170:786-792.
Not in our library
- 64.
Welsch R, Beyer P, Hugueney P, Kleinig H, von Lintig J. Regulation and activation of phytoene synthase, a key enzyme in carotenoid biosynthesis, during photomorphogenesis. Planta. 2000;211:846-854.
Not in our library10.1007/s004250000352
- 65.
White CN, Rivin CJ. Gibberellins and seed development in maize. II. Gibberellin synthesis inhibition enhances abscisic acid signaling in cultured embryos. Plant Physiol. 2000;122:1089-1097.
Not in our library10.1104/pp.122.4.1089
- 66.
White CN, Proebsting WM, Hedden P, Rivin CJ. Gibberellins and seed development in maize. I. Evidence that gibberellin/abscisic acid balance governs germination versus maturation pathways. Plant Physiol. 2000;122:1081-1088.
Not in our library10.1104/pp.122.4.1081
- 67.
Wilkinson MD, McKibbin RS, Bailey PC, Flintham JE. Use of comparative molecular genetics to study preharvest sprouting in wheat. Euphytica. 2002;126:27-33.
Not in our library
- 68.
Woodall AA, Britton G, Jackson MJ. Carotenoids and protection of phospholipids in solution or in liposomes against oxidation by peroxyl radicals: relationship between carotenoid structure and protective ability. Biochim. Biophys. Acta. 1997;1336:575-586.
Not in our library10.1016/s0304-4165(97)00007-x
- 69.
Wurtzel ET, Luo RB, Yatou O. A simple approach to identify the first rice mutants blocked in carotenoid biosynthesis. J. Exp. Bot. 2001;52:161-166.
Not in our library
- 70.
Xiong L, Zhu JK. Regulation of abscisic acid biosynthesis. Plant Physiol. 2003;133:29-36.
Not in our library10.1104/pp.103.025395
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