Abscisic Acid and Abiotic Stress Tolerance in Crop Plants

1The world population is increasing and is projected to rise by more than one billion by 2030 and over 2.4 billion by 2050. Therefore, to feed the increasing population, agricultural food production must be increased by 70 percent by 2050. The current and projected changes in abiotic stresses such as drought, salinity, cold, and heat will adversely affect the plant growth that ultimately limits the productivity and is the leading cause of crop losses worldwide, and thus our ability to feed the population.

2According to various studies, abiotic stresses trigger many physiological, biochemical, and molecular responses that influence various cellular processes in plants. To combat various environmental stresses novel and dynamic approaches should be devised, and phytohormone engineering could be a method of choice to improve the productivity. Phytohormones are the key regulators of plant growth and development as well as mediators of environmental stress responses. Among various phytohormones, abscisic acid (ABA), which is the central regulator of abiotic stress resistance in plants and coordinates an array of functions, enabling plants to cope with different stresses. In the plant, when environmental conditions are harsh, the level of ABA increases via ABA biosynthesis. The increased ABA binds to its receptor to initiate signal transduction leading to cellular responses to stresses; therefore, ABA is also called a stress hormone. ABA is a weak acid that was first isolated from young cotton fruits as an abscission-accelerating substance by Frederick Addicott and his associates. Initially, it was thought that ABA had a significant role in the process of fruit abscission. However, later intensive studies show that ABA was not directly involved in abscission process. The precise role of ABA in abscising organs is to promote senescence and stress responses, which are the processes preceding abscission. The environmental stresses like drought, salt, and low temperature that lead to decreased water availability, also called osmotic stress, promote the synthesis of ABA. ABA is significantly increased under drought or salinity stress conditions, stimulating stomatal closure, change in gene expression, and adaptive physiological responses. ABA also plays an important role in many cellular processes including seed development, dormancy, germination, vegetative growth and modulation of root architecture. Since the discovery of ABA, several efforts have been devoted to understanding how ABA is synthesized under stress conditions.

3For ABA perception and signaling, two breakthroughs were achieved in 2009 by the discoveries of the soluble ABA receptor proteins and the core signaling complexes that perceive ABA and transmit cues to subsequent molecular events, which adds the essences of more research with new ideas in ABA signaling. Recently, engineered ABA receptor using agrochemicals, which provide new possibilities for the better development of the crop. Thus, a better understanding of ABA regulatory mechanisms will contribute to engineered stress tolerant crop plants, which is one of the primary goals of plant molecular biologists. This review focuses on the recent development of the role of ABA in understanding cellular networks of biotechnological relevance in abiotic stress responses of crop plants.

4Abscisic acid is the most important phytohormone that confers abiotic stress tolerance in crop plants. In stress conditions like drought, extreme temperature, and high salinity, content in plants increases considerably, inspiring stress-tolerance effects that help plants, adapt, and survive under these stressful situations. ABA is also required for plant growth and development under non-stress conditions. ABA has multiple functions in plants. Among them, primary features are as follows.

5Seed is a crucial organ in higher plants and the transition to seed dormancy and germination signifies a key stage in the plant life cycle, which is an important ecological and economical traits. Two hormones play a role in controlling the mechanism of seed dormancy and germination, i.e., ABA and gibberellins (GAs). Both hormones, ABA, and GAs monitor the equilibrium between seed dormancy and germination. The ABA plays a central role in the induction and maintenance of seed dormancy. It also inhibits the transition from embryonic to germination growth. During the phase of desiccation tolerance, ABA metabolism must be regulated. Sometimes, ABA translocates from the roots through xylem or phloem to the shoot system to exert its action there.

6In roots, three main factors control the architecture of roots, i.e., lateral root (positions of branch roots), the angle form with parent root, and root length. Root structure is determined through interactions between the roots and its environment during their lifetime. One of the primary functions of ABA is altering root architecture, and thus changing the pattern of growth and quiescence in plant roots. For the root system, the major abiotic stress occurs when there is a scarcity of water, or the availability of water is inconsistent. Under this scenario, the levels of ABA is altered in response to the intensity of water stress. Subsequently, changes in the root environment will have both local and systemic effects on ABA-mediated responses. Similarly, ABA is an important mediator of drought, salt, and osmotic stress. All these three stresses reduce soil water potential whereas, salt stress has the added the component of ionic stress. Both salt and osmotic stresses lead to increased osmotic strength.

7ABA stimulates water flow and ion flux in root tissues suggesting that ABA regulates turgor by decreasing transpiration as well as by increasing water influx into roots. In the presence of ABA, at low water potentials, the ratio of root growth to shoot growth is higher than in the absence of ABA. Similarly, also reported that, at low water potential, ABA accumulation maintains maize primary root elongation by restricting the production of ethylene and demonstrated that ethylene plays a main role in inhibition of root elongation. At low water potential, the maize primary root became thinner and adaptive toward resource utilization by searching new soil for water, whereas ethylene increases lateral expansion or roots. It is also speculated that later root-specific activation of ABA signaling will shift the balance of root growth toward soil exploration, away from resource utilization. The accumulation of ABA in maize roots helps to elongate the roots, allowing for the exploitation of surrounding soil environments and contributing to the plants ability to cope of with water stress.

8Also, ABA may act in root meristem maintenance. The evidence was supported by, reported that ABA can promote the maintenance of stem cell by promoting of QC (quiescent center) quiescence and the suppression of stem cell differentiation. All the effects of ABA on roots appear to modulate root architecture to adopt the environmental stress conditions.

9Leaf senescence is an essential part of the final stage of plant development, which is regulated by a complex range of endogenous and environmental factors. Among these factors, ABA has been put forward to affect leaf senescence significantly. Foliar spraying with ABA has been revealed to promote leaf senescence in rice and similar results were shown in maize by. In another study, reported that the translocation of ABA from roots to shoots may be blocked in the stay green cultivar (Maize P3845) in which lower ABA level might be significant for delaying leaf senescence. Further, it has been reported that with ABA can induce leaf yellowing, which is an indicator of leaf senescence.

10An increase in endogenous ABA appears to coincide with senescence of leaves, which supports the notion that ABA functions in the leaf senescence. Likewise, ABA can promote senescence and induce expression of several specific senescence-associated genes. Many studies also reported that, in Arabidopsis mutants with deficiencies in ABA biosynthesis or signaling, exhibit altered or delayed senescence. identified a receptor kinase (RPK1) that mediates age-and ABA-induced senescence in old leaves. The four different independent studies reported that NAP (NAC-like, activated by apetala3/pistillata) is a significant positive regulator that controls leaf senescence in rice and Arabidopsis. Moreover, AtNAP, an ABA-inducible NAC family transcription factor, has been shown to play a fundamental role in leaf senescence. reported that senescence-associated gene 113 (SAG113) positively regulates ABA-induced leaf senescence by inhibition of stomata closure, leads to accelerates water loss in senescing leaves. In rice, overexpression of an NAC-like gene (OsNAP) can promote leaf senescence while knockdown of OsNAP delay leaf senescence. Further, the expression of OsNAP can be induced by ABA and is reduced in ABA-deficient mutants. They concluded that ABA-mediated leaf senescence is dependent primarily on the modulation of OsNAP expression and that OsNAP controls the ABA synthesis via a feedback mechanism. Recently, reported that SNAC-A, a subfamily of stress responsive NAC transcription factors, plays critical roles in ABA-induced leaf senescence signaling in Arabidopsis. Similarly, a cotton NAP-like transcription factor (GhNAP) has been shown to regulate leaf senescence through ABA-mediated pathways. All these studies point to the significance of NAC-type transcription factors in ABA-mediated leaf senescence.

11Stomata are small pores on the leaf surfaces formed by guard cells, which control plant gas exchange processes. Light usually stimulates stomatal opening whereas ABA and elevated CO2 levels promote partial or complete closure of stomata. During stomatal closure, decreased gas exchange results in the reduction of photosynthate production while decreased transpiration can reduce water loss from leaves. In drought conditions, ABA alteration of guard cell ion transport, which promotes stomatal closure and prevents stomatal opening, reducing water loss. The ABA-activated protein kinase (AAPK) from Vicia faba is a guard cell-specific protein kinase whose catalytic activity is activated by ABA. Further, showed that AAPK is a positive regulator of ABA-induced stomatal closure through activating plasma membrane anion channels. Many studies have shown that two types of anion channels that mediate anion release from guard cells, activated by elevated cytosolic Ca2+ levels, i.e., slow-acting sustained (S-type) and rapid transient (R-type). Only S-type channel is responsible for the ABA-mediated stomatal closure. Two different groups reported that Slow Anion Channel-Associated 1 (SLAC1), is the S-type channel that triggers membrane depolarization required for stomatal closure. The OST1 (open stomata 1) kinase is an AAPK-related protein kinase that mediates ABA-induced stomatal closure in Arabidopsis. Recently, identified OST1 as a novel regulator of plasma membrane intrinsic proteins (PIPs, a type of plant aquaporins) through phosphorylating a distinct phosphorylation site. They performed assays in epidermal peels which showed that pip2;1 knockout mutants in Arabidopsis have a defect in stomatal closure in response to ABA. This study has determined the novel function of aquaporins, which contribute to ABA-triggered stomata closure that requires an increase in guard cell permeability to water via OST1 dependent phosphorylation of PIP2;1 at Ser-121. Several studies revealed that activated OST1 kinase binds directly to and phosphorylates the anion channel SLAC1, intervening anion release from the guard cells and promoting stomatal closure. Similarly, reported that K+ channel KAT1 is also a target of SnRK2.6/OST1 and phosphorylation occurs in the C-terminal region of KAT1. These results suggest that phosphorylation is important for regulating ion channels. reported that the functions of CALCIUM-DEPENDENT PROTEIN KINASE8 (CPK8) in ABA-mediated stomatal regulation in response to drought stress via regulating CATALASE3 (CAT3) activity. They also reported that CPK8 can phosphorylate CAT3 at Ser-261 and regulate its activity. Constant efflux of both anions and K+ from guard cells drives water efflux and contributes toward to the loss of guard cell turgor, leading to stomatal closure. For depolarization of the guard cell membrane, ABA also inhibits the activity of guard cell plasma membrane H+-ATPase. ABA can induce the accumulation of reactive oxygen species (ROS) in guard cells, causing stomata to close. Two NADPH oxidases, AtrbohD, and AtrbohF are responsible for ABA-promoted ROS production in Arabidopsis guard cells. OST1 can phosphorylate AtrbohF, presumably affecting its enzymatic activity important for ROS production.

12Reactive oxygen species could enhance ABA biosynthesis. ABA treatment enhances the ROS production in guard cells. Some studies also suggested that ROS accumulation is involved in the induction of stomatal closure. Thus, enhanced ROS production in the guard cells creates a positive feedback loop to mediate stomatal closure. The level of ABA in guard cells can increase by de novo synthesis, transporter-mediated import, and recycling from inactive conjugates. Rapid stomatal responses to environmental stimuli might mainly rely on guard cell-synthesized ABA whereas ABA synthesized in the vasculature might contribute more to stomatal regulation during long-term soil water deficit. In this way, ABA has a very useful role in regulating stomatal aperture, which helps plants to adapt and survive stress conditions.

13Abscisic acid is believed to be the key hormone that mediates plant responses to adverse environmental stimuli since the level of ABA in plants usually increases during abiotic stress conditions, and elevated ABA can enhance plant adaptation to various abiotic stresses. Since the first observation of ABA accumulation in drought-stressed wheat, increased levels of endogenous ABA under drought stress conditions have been reported in many plant species which include maize, sorghum, rice, barley, soybean, and wheat. Some earlier studies have shown endogenous ABA accumulation in response to cold stress. Increased level of endogenous ABA has also been observed in salt-stressed tobacco cells and alfalfa seedlings. Exogenous application of ABA to plants can increase their adaptive responses to abiotic stresses. External application of ABA has been revealed to increase drought tolerance in some plant species. ABA treatments could increase cold resistance in cucumber and alfalfa. It is also shown that ABA can alleviate salt stress in common bean and potato.

14In addition to its role in regulating stomatal aperture, which is required to limit water loss from leaves under drought conditions, ABA induces the expression of many genes whose products are important for stress responses and tolerance such as enzymes for osmoprotectant synthesis. Transcriptome studies have shown that over 50% of the genes regulated by ABA are also governed by drought or salinity, whereas cold-regulated transcriptome shows less overlap with those induced by other stresses. Seki and his associates identified 245 ABA-inducible genes in Arabidopsis. Among the ABA-inducible genes, 63% (155 genes) were induced by drought, 54% (133 genes) by high salinity, 10% (25 genes) by cold treatment. identified 73 stress-inducible genes in rice, among them, 43 genes were induced by ABA. These results indicate significant crosstalk between ABA response and abiotic stress signaling pathways, especially for drought and high-salinity.

15The main goal of studying plant stress responses is to develop crops with improved tolerance to abiotic stresses. The knowledge of ABA being a key regulator of abiotic stress responses has been utilized for developing crops with enhances tolerance under stress conditions. Molecular manipulation of ABA synthesis or signaling has been done in different crop plants for improved stress tolerance (Table 1). Transgenic crops overexpressing the key ABA synthesis gene NCED (9-cis-epoxycarotenoid dioxygenase) have been shown to exhibit improved drought tolerance (Table 1). Similarly, crops overexpressing the ABA receptor gene PYR (pyrabactin resistance) have been reported to confer drought tolerance (Table 1). However, in many studies, the effects of ABA manipulated transgenics were not tested for its performance in yield though they reported tolerance toward abiotic stress. Some studies reported improved biomass and nutritional quality at yield level. reported that RNAi-mediated suppression of the alpha subunit of protein farnesyltransferase (protein farnesyltransferase had been shown to be a key negative regulator controlling ABA sensitivity in Arabidopsis guard cells; ) leads to drought tolerance in canola under drought conditions. In well water conditions, they were not able to find yield difference but in drought conditions, they found better yield than non-transgenics. Recently, reported that the major latex protein-like protein 43 (MLP43) is a positive regulator of ABA response and overexpression of MLP43 conferred drought tolerance in Arabidopsis. It remains to be seen whether genetic manipulation of MLP43 expression could improve the drought tolerance of crops.

16Abscisic acid biosynthesis occurs in two places; it starts from plastids and ends in the cytosol. ABA in higher plants synthesized via the mevalonic acid-independent pathway also called indirect pathway. In this pathway, ABA is synthesized through cleavage of a C40 carotenoid precursor, followed by a two-step conversion of the intermediate xanthoxin to ABA via ABA aldehyde, which will be oxidized into ABA. Mutants defective in ABA biosynthesis have been isolated in many plant species from maize, tomato, tobacco, potato, barley and Arabidopsis. The primary mechanism of ABA biosynthesis pathway is shown in Figure 1.

17The first step of ABA biosynthesis pathway is the conversion of zeaxanthin and antheraxanthin to all trans-violaxanthin, which will be catalyzed by zeaxanthin epoxidase (ZEP) in the plastid. The ZEP was identified by. In this reaction, antheraxanthin is the intermediate formed. After that, all trans-violaxanthin converted to 9-cis-violaxanthin or 9′-cis-neoxanthin. The enzyme involved in this reaction is unknown. After that, oxidative cleavage of 9-cis-violaxanthin and 9-cis-neoxanthin, catalyzed by the enzyme called 9-cis-epoxy carotenoid dioxygenase (NCED), which yields a C15 intermediate product called xanthoxin and C25 metabolite. ZmNCED gene was first isolated using the maize viviparous14 mutant, and NCED is the key enzyme in ABA biosynthesis. Then the product xanthoxin is exported to the cytosol where xanthoxin is converted to ABA. In this step, xanthoxin is converted into ABA by two enzymatic reactions. First of all, xanthoxin is converted to an ABA aldehyde by an enzyme called short-chain alcohol dehydrogenase/reductase (SDR) encoded by the AtABA2 gene in Arabidopsis thaliana. The next and final step of ABA biosynthesis is oxidation of the abscisic aldehyde to ABA, catalyzed by the abscisic aldehyde oxidase (AAO).

18When stress signals are diminished ABA is metabolized into inactive products. That is accomplished by two pathways called hydroxylation and conjugation. In hydroxylation, ABA is hydroxylated via oxidation of three methyl groups (C-7′, C-8′, and C-9′) of the ring structure. Among these C-8′ is known as the dominant catalytic pathway. In the 8′-hydroxylation pathway, phaseic acid (PA) and dihydro phaseic acid (DPA) are the amplest ABA catabolites. Cytochrome P450 type enzyme (CYP707A) is a crucial enzyme for ABA metabolism. The metabolism is controlled by the expression of CYP707A gene in the stomata and vascular tissues of leaves under rehydrated conditions. According to, the activation of glucosidase via stress-induced polymerization also rapidly increases the active pools of ABA. Similarly, reported that CYP707A3 functions in vascular tissues to reduce systematic ABA levels. On the other hand, CYP707A1 catabolizes local ABA pools in guard cells in response to high humidity. The second pathway for inactivating ABA is conjugation. ABA conjugation plays a significant role in the regulation of the amounts under both normal and dehydration conditions. ABA and its hydroxylated catabolites can be conjugated to glucose. ABA glucosyl ester (ABA-GE) is synthesize by glycosyltransferase. ABA-GE is synthesized in the cytosol and stored in vacuoles. Under abiotic stress conditions, ABA glucosyl ester could be converted to ABA by enzyme-catalyzed hydrolysis. The glycosidase enzyme catalyzing the hydrolysis of ABA-GE to free ABA was first demonstrated in barley. Subsequently, two ABA-GE hydrolyzing enzymes, BG1 (beta-glycosidase homolog 1) and BG2, have been isolated in Arabidopsis. BG1 is found in endoplasmic reticulum whereas BG2 is present in the vacuole. The ABA released from ABA-GE may not be required for fast stomatal responses, as the loss-of-function mutant of BG1 and BG2, bg1bg2, show wild-type like stomatal responses to reduced air humidity, elevated CO2, and ABA.

19The translocation of ABA between cells, tissues and organs also play important roles in whole plant physiological response to stress conditions. ABA, being a weak acid, can diffuse passively across biological membranes when it is protonated. ABA can also be transported across membranes by transporters. ABA transporters were first identified in Arabidopsis, and they are ATP-binding cassette (ABC)-containing transporter proteins. AtABCG25 encodes a half-size ABC transporter protein and which is responsible for exporting ABA from vascular tissues, the main sites of ABA synthesis in plants; AtBCG40, a full-size ABC transporter, acts as an ABA importer in plant cells. Subsequently, AtABCG22 was shown to be required for stomatal regulation and proposed to function as ABA transporter. Later, reported that ABCG16 is involved in ABA tolerance. Currently, have demonstrated four AtABCG protein functions together to supply ABA in mature imbibed seeds. They showed that AtABCG25 and AtABCG31 export ABA from the endosperm to the embryo, whereas AtABCG30 and AtABCG40, transport ABA into the embryo. These studies demonstrate that certain ATP-binding cassette (ABC)-containing transporter proteins are important for ABA transport and responses. In addition to ABA transporters belonging to the ABC family, other types of ABA transporters are also found. identified an ABA-importing transporter (AIT1) by transport assay in yeast and insect cells. AIT1 belongs to the NRT1 (nitrate transporter 1) transporter family. ait1 mutants were less sensitive to ABA during germination and post-germination growth and stomata remained open whereas overexpression of AIT1 resulted in ABA hypersensitivity. Recently, AtDTX50 (Detoxification Efflux Carrier 50) has been found to participate in ABA transport in Arabidopsis. AtDTX50 is a membrane protein in the MATE (Multidrug and Toxic Compound Extrusion) transporter family. The atdtx50 mutant showed faster ABA-induced stomatal closure, indicating increased ABA accumulation in the guard cells that confer drought tolerance. AtDTX50 is primarily expressed in vascular tissues and guard cells. These results indicate that AtDTX50 mediates ABA efflux from the cytosol of vascular and guard cells located in the plasma membrane. It appears that multiple types of transporters are involved in ABA transport in plants.

20Abscisic acid is a key endogenous messenger in plants, and it has a crucial role in various plant stresses. Therefore, understanding the signaling mechanism of ABA is critical for improving plant performance under stress environments and most needed in projected warmer and drier future climate. There are three core components of ABA signaling; pyrabactin resistance (PYR)/pyrabactin resistance-like (PYL)/regulatory component of ABA receptors (RCAR), protein phosphatase 2C (PP2C: acts as negative regulators) and (Sucrose non-fermenting) SNF1-related protein kinase 2 (SnRK2: acts as positive regulators). In the presence of ABA, PYR/PYL/RCAR-PP2C complex formation leads to inhibition of PP2C activity, which allows the activation of SnRK2. Activated SnRK2 then phosphorylates downstream substrate proteins such as transcription factors, and thus facilitating transcription of ABA-responsive genes (Figure 2).

21Two independent research groups made remarkable discovery of an ABA receptor. They identified Arabidopsis PYR1 (pyrabactin resistance 1), PYL (PYR-related) or RCAR (Regulatory Component of ABA Receptor) proteins as ABA receptors. The Arabidopsis genome contains 14 PYR/PYL/RCAR genes, which encode highly conserved small proteins with 159-211 amino acid residues. Many of PYR/PYL/RCARs including PYR1, PYL1 and PYL2 have been shown to directly bind ABA. Once bound to ABA this receptor can bind to group A protein phosphatases (PP2C), including ABI1 (ABA-insensitive 1) and ABI2, the negative regulator of ABA signaling. These ABA receptors played a critical role in ABA perception, as quadruple mutants pyr1, pyl1, pyl2 and pyl4 (recently six i.e., pyr1/pyl1/pyl2/pyl4/pyl5/pyl8) are insensitive toward ABA. They also showed hyposensitivity in germination and root growth response to ABA. Overexpression of PYL5, PYL8 or PYL9 enhanced ABA responses or conferred drought resistance to Arabidopsis thaliana. The PYR/PYL/RCAR family in Arabidopsis (except PYL13) is capable of activating ABA signaling response, suggesting that nearly all members can function as ABA receptors. reported that ABA-dependent inhibition of PP2Cs by PYR/PYLs is essential for the perception of moisture gradient. The structural and molecular studies conducted by many scientists have convincingly shown that PYR/PYL/RCAR receptors play a central role in ABA perception.

22Reversible protein phosphorylation catalyzed by protein kinases and phosphatases play a significant role in cellular signal transduction, which helps in the transmission of signals from external to the internal environment of the cell. There are 112 phosphatases encoded in the Arabidopsis genome, among them 76 genes encode for PP2Cs. At least 6 of the nine members of the group A PP2Cs have been shown to involved in ABA signaling, among them, ABI1, ABI2, and HAB1 are the well characterized. The members of the group A have defined roles in different tissues with tissue-specific expression patterns. The PP2C group A genes first characterized are ABI1 and ABI2, which was isolated from a genetic screen in Arabidopsis. Both abi1 and abi2 mutants show insensitivity in various tissues, developmental stages, suggesting that they act as a negative regulator of ABA signaling. Both of these mutants display reduced seedling growth, seed dormancy, drought tolerance and stomatal regulations. Few years later, HAB1 (homolog to ABI1) and HAB2 were isolated based on their sequence similarity to ABI1. Similarly, other members of A group PP2Cs such as AHG1 and AHG3/AtPP2CA were identified in genetic screens of Arabidopsis and yeast complementation test. It has been shown that all of the loss-of-function mutants of group A PP2Cs exhibit significant ABA hypersensitivity, which establishes them as the major negative regulators of ABA signaling. ABI1, ABI2, and HAB1 showed a dominant role in ABA signaling pathways in both seeds and vegetative tissues; the evidence is supported by gene expression data and genetic analysis. Recessive hab1-1 mutants showed enhanced ABA-responsive gene expression, increased ABA-mediated stomatal closure and ABA-hypersensitivity in seed germination. These results indicate that HAB1 negatively regulates ABA signaling. These results are consistent with the fact that PP2Cs function as negative regulators of ABA signaling. Recently, reported a group A PP2C from rice gene (OsPP108), whose expression is highly inducible under salt and drought stresses. The overexpression of OsPP108 confers ABA insensitivity and tolerance to stresses like high salt and mannitol.

23The identification of PP2Cs showed that reversible protein phosphorylation process is primary in ABA signaling pathway. Protein kinases are known to be involved in ABA signaling pathway. The sucrose non-fermenting 1 (SNF1)-related protein kinase2 (SnRK2) family of protein kinases are plant specific serine/threonine kinases participating in plant response and has a central role in cellular responses to drought and dehydration. The first protein kinase having ABA-stimulated catalytic activity was identified as an AAPK in Vicia faba. AAPK is a positive regulator of ABA-induced stomatal closure. Subsequently, the AAPK ortholog in Arabidopsis, OST1 (Open Stomata 1)/SnRK2.6, was shown to function in ABA-mediated stomatal regulation. Similar to AAPK, ABA-activated protein kinases have been identified in Arabidopsis and rice; they belong to the SnRK2 family. These ABA-activated protein kinases mediate ABA signaling by phosphorylating their substrate proteins such as transcription factors, ion channels, and metabolic enzymes. According to, transcription of PKABA1 is induced by ABA and occurs in embryos and seedlings. The function of PKABA1 is to mediate ABA-suppressed gene expression. PKABA1 phosphorylates and activates the ABA-responsive basic-domain leucine-zipper (bZIP) transcription factor TaABF, which help in regulation of ABA signaling in seed development and germination. Similarly, AAPK modulates an RNA-binding protein AKIP1 by phosphorylating it and inducing its translocation into subnuclear speckles in guard cells.

24SnRK2 family is the key regulator of plant response to abiotic stress and is divided into three sub-groups depending upon the affinity toward ABA. Subgroup-I kinases do not respond to ABA whereas subgroup-III actively respond to ABA and believed to be the key regulator of ABA-dependent pathway gene expression. Subgroup-II weakly responds or did not provide a response to ABA. There are altogether 10 SnRK2 members found in Arabidopsis thaliana, i.e., SnRK2.1-SnRK2.10 or SnRK2A-SnRK2J. Among them, 5 SnRK2 members (SnRK2.2., SnRK2.3, SnRK2.6, SnRK2.7, and SnRK2.8) can be activated by ABA. The all of the SnRK2s except SnRK2.9 can be activated by osmotic stress, which indicated that most SnRK2 members are involved in ABA and stress signaling. Among them, SnRK2.2, SnRK3.3, and SnRK2.6 (Subgroup-III) are known as primary regulators of ABA since they exhibit the strongest activation of ABA. The first member of the Arabidopsis SnRK2 family is OST1/SnRK2.6 which identified by forward genetic approach and act as a regulator of ABA signaling. The mutant snrk2.6 (ost1) cannot exhibit ABA-induced stomatal closure, indicating that it positively regulates the stomatal response to ABA. The SnRK2.6 gene mainly expressed in guard cells, and the vascular system whereas seed germination and post-germination growth were not affected in snrk2.6 loss-of-function mutant, which indicated that the SnRK2.6 protein kinase may not function in seed germination. Moreover, SnRK2.2 and SnRK2.3 function redundantly in ABA-induced inhibition of seed germination and post-germination growth. According to, snrk2.2 and 2.3 single mutants show weak, while snrk2.2 and snrk2.3 double mutant exhibits high ABA-insensitive phenotypes regarding seed germination and seedling growth. The triple mutation (snrk2.2/2.3/2.6), nearly block all the main ABA responses. In Arabidopsis proteins extract, these 3 SnRK2s, along with 9 of the 14 members of PYR/PYL/RCARs, could be co-immunoprecipitated with ABI. Though the composition of co-purified proteins was ABA-independent, these data suggest that at least ABI1, the 3 SnRK2s and at least 9 of the 14 receptor proteins may constitute a core signaling complex. The expression profile of these three SnRK2s genes supports their redundant, supportive roles in the ABA responses. Double mutant snrk2.7/2.8 affect the expression of ABA and drought responsive genes, indicating that SnRK2.7/2.8 has potential roles in ABA signaling although snrk2.7 and snrk2.8 single mutation show wild-type phenotypes due to functional redundancy.

25Many studies reported that phosphorylation at the activation loop is critical for the activation of SnRK2s. Several phosphorylation sites have been identified in SnRK2.6; ABA stimulates phosphorylation of Ser 175 in the activation loop, whereas PP2C can dephosphorylate the Ser175 of SnRK2.6 in the absence of ABA, resulting in the deactivation of SnRK2.6. Quantitative analysis confirmed that ABA treatment increases the phosphorylation of the site in vivo and phosphorylation of the site is also increased by osmotic stress. SnRK2 activation loop phosphorylation may also implicate unidentified upstream kinases in plants. ABA- or stress-activated SnRK2 family members have been found in Vicia faba, soybean, Arabidopsis, tobacco, rice, Chlamydomonas reinhardtii, maize, sorghum, and wheat.

26Understanding how SnRK2 kinases exert their effects in ABA signaling network requires knowledge of SnRK2 targets. Several phosphorylation substrates of SnRK2 kinases have been identified using biochemical and molecular approaches. The ABFs (ABA-responsive-element Binding Factor)/AREBs (ABA-Responsive Element Binding factors) transcription factors involving in regulating ABA-responsive genes are SnRK2 substrates as ABA-activated SnRK2 kinases have been shown to phosphorylate ABF/AREB proteins in vitro and in vivo. Another transcription factor involved in ABA signaling, ABI5, can be phosphorylated in vitro by ABA-activated SnRK2 kinases. In addition to nuclear transcription factors, SnRK2 can also phosphorylate plasma membrane proteins. The guard cell OST1/SnRK2.6 has been shown to phosphorylate the anion channel SLAC1, the potassium channel KAT1, and the NADPH oxidase AtrbohF, all of which are plasma-membrane proteins important in controlling stomatal aperture. To identify more potential SnRK2 targets, phosphoproteomic approaches have been used to survey ABA-responsive phosphoproteins. Six ABA-regulated phosphoproteins (ascorbate peroxidase, Ca2+/H+ antiporter regulator protein, G protein beta subunit-like protein, glyoxysomal malate dehydrogenase, manganese superoxide dismutase, and triosephosphate isomerase) have been identified from rice leaves by using 2-D gel electrophoresis, phospho-antibody immunoblotting, and mass spectrometry. Using snrk2.2/2.3/2.6 triple knockout mutant and comparative phosphoproteomics, two research groups have identified respectively 35 and 58 putative SnRK2 substrates. The putative SnRK2 substrates identified by the two groups show little overlap, suggesting that the three ABA-activated protein kinases (SnKR2.2, SnKR2.3, and SnKR2.6) can target and regulate a range of proteins via ABA-mediated phosphorylation.

27Recently, a novel regulatory component ARK is identified by. They reported that ARK was an essential signaling component for the regulation of SnRK2 in basal land plants. A single gene encodes ARK (ABA, and abiotic stress-responsive Raf-like kinase) in moss (Physcomitrella patens) which belongs to the family of group B3 Raf-like MAP kinase kinases (B3-MAPKKKs). Phosphorylation and activation events in these kinases are modulated through their non-kinase domain by dimerization, binding of other regulatory proteins or phosphorylation by upstream MAPKKK kinases. However, reported that ARK might be activated itself by autophosphorylation in the activation loop by using transient assay of phosphopeptide mapping and mutational analysis. Their study showed that ARK provides positive regulation of ABA signaling in addition to the negative relation by group A PP2Cs in bryophytes, which provides new insights into a signaling pathway for a possible connection between these kinases through unknown mechanisms operating in plant ABA response. They also revealed that hyperosmosis induced activation of plant SnRK2s mediated by an upstream of ARK. Recently the other study also reported that hyperosmosis mediated response by both ABA-dependent and independent mechanism using ABA-deficient mutant of P. patens. To understand the molecular mechanism, they identified one mutant AR7 (ARK) and microarray profiles showed that the expression of a majority of the ABA-responsive genes was affected in AR7. The expression of 518 out of 579 ABA upregulated genes in the wild-type line was reduced significantly in AR7. These genes are included 27 LEA-like genes which are responsible for dehydration stress tolerance. RNA gel blot analysis also confirmed impaired ABA-induced gene expression in AR7. Furthermore, levels of 150 of 165 ABA down-regulated transcripts were higher in AR7 than in wild type. They showed that ARK could phosphorylate serine residues in the activation loop of SnRK2B thus activating SnRK2B and ABA signaling. These results indicated that gene impaired in AR7 encodes an important positive regulator of ABA-responsive gene expression in P. patens. All these findings suggested that B3-MAPKKKs in angiosperms are involved in positive regulation of SnRK2 in ABA response and SnRK2 activation.

28In contrast to ARK, another new negative regulator of SnRK2 has been reported recently identified Casein Kinase 2 (CK2) as a negative regulator of SnRK2 in maize. CK2 is an evolutionary multi-subunit serine/threonine kinase and found in all eukaryotes. Among all kinase, CK2 is unique because it can use either ATP or GTP as phosphoryl donors. CK2 is involved in plant growth and development, light-regulated gene expression, hormone responses, cell-cycle regulation, flowering time, DNA repair or responses to abiotic stress and biotic stresses in plants. In the case of abiotic stresses, CK2 acts as an ABA regulator because ck2α mutants are hypersensitive to ABA concerning seed germination, cotyledon greening, and stomatal opening. These effects were attributed to the down-regulation of ABA-related genes, including OST1, but the biochemical relationship between CK2 and OST1 was not clear. In Arabidopsis, OST1 is the best genetically and biochemically characterized SnRK2, functioning as a key regulator in the core of ABA signaling module. CK2 can phosphorylate the ABA box of ZmOST1 to accelerate the latter’s turnover and to promote binding to PP2Cs, suggesting that CK2 is a regulator of OST1 protein stability. They also showed that overexpression of ZmOST1 in transgenic Arabidopsis plants exhibit highly resistant to drought and hypersensitive to ABA at the level of stomata. These two newly discovered SnRK2 regulators (B3-MAPKKK and CK2) will add more focused research toward ABA signaling pathway (Figure 2).

29Transcription factors are master regulators that integrate, balance, and coordinate hormonal, developmental and environmental signals in plant systems. A single transcription factor can regulate the expression of many target genes through specific binding of a transcription factor to cis-acting elements in promoters of respective target genes. Plant genomes assign approximately 7% of their coding sequences to transcription factors, which provides the complexity of transcriptional regulation. Transcription factors significant for the regulation of ABA-related gene network include AREBs (ABA-responsive element binding proteins)/ABFs (ABRE binding factors), ABI5 (ABA insensitive 5), MYB (myeloblastosis), MYC (myelocytomatosis), NAC (NAM: no apical meristem; ATAF: Arabidopsis transcription activation factor; CUC: cup-shaped cotyledon), and ERF (ethylene response factor).

30AREBs/ABFs belong to the bZIP (basic leucine zipper) transcription factor subfamily. They were isolated based on their interaction with ABRE (ABA-responsive element) in vitro and regulatory function in ABA and or stress responses. For example, AREB1/ABF2, AREB2/ABF4, and ABF3 can be induced by high salt, dehydration or ABA treatment in vegetative tissues. reported that overexpression of ABF3 confers tolerance to chilling, freezing, high temperature, and drought stress. Similarly, ABP9 (ABA-responsive-element binding protein 9) is also a member of the bZIP family found to be associated with drought and heat stress. Constitutively expression of ABP9 in Arabidopsis improve photosynthetic capacity under water deficit and heat shocks, suggesting that ABP9 has a significant role in the regulation of plant photosynthesis under stress conditions.

31ABI5 is also a member of Arabidopsis bZIP transcription factor subfamily and has four conserved domains. The ABI5 expression is higher in mature seeds and young seedling exposed to ABA or dehydration stress. ABI5 can bind to ABRE in the promoters of its target genes and is a positive regulator of ABA-regulated transcription networks. Similar to Arabidopsis ABI5, overexpression and upregulation of OsABI5 in rice under ABA and salinity conditions confers salt tolerance.

32MYC and MYB, belonging to the bHLH (basic helix loop helix) subfamily, also play a regulatory role in ABA signaling by activating some stress-inducible genes. MYB in Arabidopsis namely AtMYB60, AtMYB44, and AtMYB15 have been shown to be involved in the regulation of stomatal closure and ABA-mediated response to drought and salt stresses. The Arabidopsis MYC transcription factor, AtMYC2, is an ABA-responsive gene induced by drought and salt.

33NAC transcription factors appear to be involved in ABA transcriptional network. The Arabidopsis NAC-type transcription factor, AtNAC, has been shown to play a fundamental role in the regulation of ABA- and senescence-induced genes. Furthermore, ABA can induce the expression of seven stress-induced NAC transcription factors in Arabidopsis. Loss-of-function mutation of these NAC transcription factor genes confers retardation of leaf senescence induced by ABA, suggesting that NAC transcription factors play a key role ABA-induced leaf senescence. Recently, reported that the RhNAC3 transcription factor is involved in regulating ABA signaling pathway in Arabidopsis and rose. Overexpression of RhNAC3 in Arabidopsis resulted in ABA hypersensitivity during seed germination and enhanced stomatal closure in response to ABA or drought treatments. Furthermore, the expression of downstream genes of ABA signaling pathways was repressed in RhNAC3-silenced petals in a rose, suggesting that the RhNAC3 transcription factor plays a role in regulating ABA-related genes.

34Finally, ERF-type transcription factors have been implicated in regulating ABA response. Overexpression of AtERF7 (Arabidopsis ERF 7) caused reduced sensitivity to ABA in guard cells and increased transpiration water loss, whereas repression of AtERF7 via RNA interference resulted in increased sensitivity to ABA. These findings show that the ERF7 transcription factor can play a significant role in regulating ABA responses. Similarly, a tomato ERF-type transcription factor, JERF3, was shown to be transcriptionally induced by salt and ABA and overexpression of JERF3 leads to tobacco plants with enhanced tolerance to salinity. Therefore, the transcription factors mentioned in the above sections illustrate the regulation of the complex ABA-dependent transcription networks in plants under stress conditions.

35Drought and salt stress-induced the accumulation of ABA, which then act as a stress signal. According to, ABA signaling leads to substantial changes in gene expression, which implicate changes in transcription, transcript processing, and stability. Many studies reported that almost 10% of the Arabidopsis genes are regulated by ABA. In the other study, identified 3494 ABA-responsive transcripts and 50 ABA-responsive proteins using microarrays and quantitative proteomics. Among the identified ABA-responsive genes, 1512 genes were upregulated, and 1982 genes were downregulated by ABA treatment.

36Abscisic acid-dependent gene expression requires the binding of transcription factors to cis-regulatory elements in target genes promoters. The major cis-regulatory element associated with expression of ABA-responsive-genes is the ABA-response element (ABRE: PyACGTGG/TC), which may require an ABRE-coupling element (CE) for full function. ABRE-binding proteins (AREBs) or ABRE-binding factors (ABFs) are the transcription factors that can bind to the ABREs of ABA-responsive genes and activate their gene expression. Further, ABA-dependent phosphorylation of AREBs/ABFs in multiple RXXS/T sites is necessary for their activation. ABA-activated SnRK2 kinases have been shown to be responsible for ABA-dependent phosphorylation of AREBs/ABFs. In Arabidopsis, ABA-dependent upregulation of gene expression could be stamped out in the mutant lacking all three ABA-activated SnRK2 kinases, suggesting that ABA-activated SnRK2s play an essential role in regulating the expression of ABA-responsive genes through phosphorylating AREBs/ABFs. Moreover, comparative transcriptome analyzes reveal that the majority but not all of ABA-responsive genes down-regulated in the triple mutant of ABA-activated SnRK2s are also down-regulated in the quadruple mutant of ABREs/ABFs. These results indicate that AREB1, AREB2, and ABF3 and ABF1 are the major transcription factors downstream of the ABA-activated SnRK2s in ABA signal transduction during vegetative growth. Nevertheless, these results also suggest that other transcription factors targeted by ABA-activated SnRK2s may contribute to transcriptional regulation of ABA-responsive genes.

37ABA insensitive 5 (ABI5) is an important regulator of ABA responses during seed germination and seedling growth. Like AREBs/ABFs, the basic leucine zipper (bZIP)-type transcription factor ABI can also bind to ABREs and regulate the expression of some ABA-responsive genes. ABA-activated SnRKs can phosphorylate ABI5 and phosphorylation of ABI5 is required for activating the transcription factor. Dephosphorylation of ABI5 by serine/threonine protein phosphatase 6 can negatively regulate ABA signaling. These results indicate that ABA could regulate some ABRE-dependent gene expression via SnRK2-mediated phosphorylation and activation of ABI5 family transcription factors during cellular dehydration in seeds.

38The RAV1 (Related to ABI3/VP1) transcription factor, which belongs to the Ethylene Responsive Factor (ERF) family, is another transcriptional regulator targeted by the ABA-activated SnRK2s in Arabidopsis. demonstrated that RAV1 is a negative regulator of ABA signaling, and it suppresses the expression of ABA-responsive genes such as ABI3, ABI4, ABI5, Em1, and Em6. Biochemical analysis showed that the ABA-activated SnRK2s (SnRK2.2, SnRK2.3, and SnRK2.6) interact with and phosphorylates the RAV1 protein. Genetic analysis revealed that the ABA-activated SnRK2s could repress the activity of RAV1. Taken together, this work shows that ABA-activated SnRK2s can inactivate a transcription factor via phosphorylating it. Another study has shown that the ABA-activated SnRK2.6 is involved in phosphorylating and inactivating basic helix-loop-helix (bHLH)-type transcription factors, which have critical roles in stomatal regulation. It is interesting to see whether SnRK2s mediated phosphorylation of transcriptional regulators would contribute to regulating ABA-repressive genes. Earlier studies demonstrate that bZIP transcription factors (ABF1, ABF2/AREB1, and ABI5) play a positive role in ABA signaling and the transcriptional activity of these factors are activated via SnRK2s-mediated phosphorylation. The work by showed that RAV1 is a negative regulator of ABA signaling and SnRK2s-mediated phosphorylation repress the activity of RAV1. Thus, SnRK2s, as core components in ABA signaling, can phosphorylate both positive and negative regulators in ABA signaling network. Not all ABA-responsive genes contain ABRE(s) in their promoter regions. Therefore, transcription factors recognizing non-ABRE regulatory elements such as NAC and MYC/MYB may be involved in regulating these ABA-responsive genes. It remains to see if the ABA-activated SnRK2s have a role in the regulation of the activity of these transcription factors.

39RNA-binding proteins, which interact directly with RNA molecules, have crucial roles in many aspects of post-transcriptional control of gene expression, including RNA splicing and processing, mRNA stabilization, mRNA localization and translation.

40RNA-binding proteins typically contain one or more RNA-binding domains which include RNA-recognition motif, K homology domain, zinc finger, cold-shock domain, aspartate-glutamate-alanine-aspartate (DEAD) box, and double-stranded RNA-binding domain. The current understanding suggests that RNA-binding protein-mediated post-transcriptional gene regulation plays a significant role in ABA response. The mutation in the hyponastic leaves 1 (HYL1) gene encoding a double-stranded RNA-binding protein causes hypersensitivity to ABA during seed germination in Arabidopsis. Similarly, the mutation in the supersensitive to ABA and drought 1 (SAD1) gene encoding a polypeptide similar to Sm-like small nuclear ribonucleoproteins (snRNP) involving nuclear mRNA processing increases plant sensitivity to ABA and drought stress. Arabidopsis mutant defective in the mRNA cap-binding protein, ABH1 (ABA hypersensitive 1), shows ABA-hypersensitive regulation of seed germination and stomatal closing. Mutation in the DEAD box RNA helicase gene LOS4 (low expression of osmotically responsive genes 4) in Arabidopsis confers ABA hypersensitive and cold tolerance phenotype. The accumulation of poly (A)+ RNA in the nuclei in this mutant suggests that this RNA helicase plays a crucial role in mRNA export from the nucleus. Two other Arabidopsis DEAD-box RNA helicase genes have been shown to be down-regulated by ABA and multiple abiotic stresses. Insertional mutants of the two genes exhibit improved tolerance to salt, osmotic, and heat stresses, suggesting that these two DEAD-box RNA helicases are involved in regulating abiotic stress responses. In maize, a DEAD box RNA helicase (ZmDRH1) has been shown to interact with a glycine-rich RNA-binding protein (MA16), which can be induced by ABA and dehydration although their functions in ABA and stress responses are not understood. Another example of the involvement of RNA-binding proteins in ABA response in crop plants is ABA-activated protein kinase (AAPK)-interacting protein 1 (AKIP1), a heterogeneous nuclear ribonucleoprotein (hnRNP) in Vicia faba. ABA treatment induces phosphorylation of AKIP1 and its relocation into the subnuclear structures resembling splicing speckles. Similarly to AKIP1, its homolog in Arabidopsis called UBA2a [poly(U)-Binding Associated 2a] has also been shown to be translocated into nuclear speckles in response to ABA treatment. However, it is not certain whether the AKIP1 and UBA2a relocate into the genuine splicing speckles upon ABA treatment, the functional significance of nuclear re-localization of AKIP1 and UBA2a remain unclear.

41Besides hnRNPs, another class of RNA-binding proteins playing a key role in regulating alternative splicing is serine/arginine-rich (SR) proteins. Several studies have provided a link between plant SR proteins and ABA response. Two Arabidopsis SR genes (SR1 and SR33) have been shown to change their alternative splicing patterns in response to ABA treatment. Also, gene expression analysis has identified six SR genes and the two SR-like genes from Arabidopsis to be involved in ABA-related responses. Furthermore, a genetic study has pinpointed that the Arabidopsis SR45 protein as a negative regulator of glucose and ABA signaling in early seedling development. These studies indicate that post-transcriptional control of gene expression at the stages of pre-mRNA splicing and processing, mRNA stabilization, and mRNA export from the nucleus to the cytoplasm by RNA-binding proteins is critical for ABA signaling. Further identification of the direct targets of these RNA-binding proteins will be necessary to fully understand the molecular mechanisms underlying ABA action.

42Besides post-transcriptional regulation, post-translational control of targeted proteins by ubiquitination, the covalent ligation of proteins to the highly conserved small protein called ubiquitin, has been shown to be involved in ABA signaling. Ubiquitination is carried out by three types of enzymes: ubiquitin-activating enzymes (E1s), ubiquitin conjugating enzymes (E2s), and ubiquitin ligases (E3s). Ubiquitination can affect proteins in different ways: it can tag proteins for degradation via the proteasome, change their cellular location, and promote or prevent interactions of proteins. Several key proteins in ABA signaling have been shown to be targeted by ubiquitination for proteasomal degradation. Low ABA levels enable recognition and ubiquitination of ABA receptors (e.g., PYL8) by the ubiquitin ligase substrate adaptor DDA1 and associated ubiquitin ligases. Proteasomal degradation of ubiquitinated ABA receptors allows the release of PP2C phosphatases, negatively regulating SnRK2-mediated ABA signaling. On the other hand, increased ABA levels can stabilize the ABA receptors by restricting their ubiquitination. Furthermore, the ubiquitin ligase RSL1 can target PYL4 and PYR1 ABA receptors in the plasma membrane and promote ubiquitination-mediated degradation of the ABA receptors. The PP2C phosphatase ABI1 can also be ubiquitinated when it is associated the ABA receptor (e.g., PYR1). Proteasomal degradation of ABI1 may allow ABA signal to be transmitted more efficiently under stress conditions by eliminating the negative regulator of ABA signaling. Also, ABI5, a key regulator of ABA signaling, can be targeted by ubiquitination for proteasomal degradation, which could be important for inhibiting the expression of ABA-responsive genes regulated by ABI5. Similarly, the abundance of the ABF1 and ABF3 transcription factor proteins is regulated by ubiquitination-mediated degradation, and ABA can stabilize ABF1 and ABF3 proteins. Two dozen ubiquitin ligases are known to participate in ABA signaling. For example, the endoplasmic reticulum-localized ubiquitin ligase SDIR1 (Salt-and Drought-Induced Really interesting new gene finger1) regulates ABA-mediated seed germination and salt stress response through ubiquitinating its substrate, SDIRIP1 (SDIR1-Interacting Protein 1) and subsequent proteasomal degradation. The substrate proteins of some ubiquitin ligases implicated in ABA signaling are still not known. For instance, the ubiquitin ligase CHYR1 (CHY zinc-finger and Ring protein 1) promotes ABA-induced stomatal closure and improves plant drought tolerance. However, the substrate of CHYR1 is unknown. Nevertheless, substantial studies have demonstrated the important role of ubiquitination in many steps of ABA signal transduction.

43Epigenetics are the changes in gene function that are not due to changes in DNA nucleotide sequence, but rather due to chemical modification of DNA and its associated proteins. Epigenetic modifications comprise DNA methylation, histone modifications, and the production of microRNA. As environmental stress factors can cause epigenetic modification of the genome, which provides an important mechanism for mediating gene-environment interplay. Recent studies suggest that epigenetic modification plays a significant role in plant response to abiotic stresses such as drought, salinity, heat, and cold. Here, we provide insights on epigenetic regulation of ABA-related stress signaling networks.

44DNA methylation is the addition of a methyl group to the cytosine residues in DNA by DNA methyltransferases. In plants, cytosines in the contexts of CG, CHG, and CHH (H = A, C, or T) can be methylated. While CG methylation can occur in active genes, CHG and CHH methylation is almost exclusively present in heterochromatin. DNA methylation in promoter regions is accompanying with repression of gene expression. The effect of DNA methylation in the gene body varies according to the level of methylation: extreme low or high level of DNA methylation correlates with lower gene expression while modest DNA methylation is associated with higher gene expression. Two recent studies suggested that ABA can regulate gene expression through DNA methylation. showed that ABA represses gene expression in P. patens via DNA methylation of gene promoters. In another study, ABA was shown to increase DNA methylation of promoters in three ABA-repressive genes in Arabidopsis crown galls, indicating the importance of DNA methylation in gene regulation by ABA. Further studies are needed to elucidate more ABA-responsive genes for DNA methylation changes in response to ABA to understand the role of ABA in DNA methylation-dependent gene regulation.

45Among histone modifications, histone acetylation has been shown to be important in regulating ABA-responsive genes and stress responses. Overexpression of AtHD2C (an Arabidopsis histone deacetylase gene) in Arabidopsis resulting in enhanced expression of ABA-responsive genes and improved drought tolerance suggest that histone deacetylation could play a fundamental role in activating ABA-responsive genes in acclimating plants to drought. Conversely, mutation or repression of a histone deacetylase gene HDA6 causing decreased expression of ABA and abiotic stress-responsive genes confers ABA and salt stress-hypersensitive phenotypes. Similarly, HDA19 histone deacetylase mutants also showed hypersensitive to ABA and salt stress. Furthermore, mutation of the HOS15 gene, which encodes a protein similar a component in the human nucleosome deacetylation complex, confers ABA and salt stress-hypersensitive phenotypes. These studies indicate that histone acetylation and deacetylation play a critical role in the regulation of ABA-responsive genes and plant responses to abiotic stresses. In addition, chromatins remodeling factors and nucleosome assembly proteins have also been implicated in ABA responses. The chromatin remodeling protein BRM in Arabidopsis has been shown to repress ABA responses by remodeling the nucleosomes at the ABI5 (ABA insensitive 5) locus and thus inactivating expression of the ABA-related transcription factor ABI5. Three nucleosome assembly proteins in Arabidopsis (AtNAP1;1, AtNAP1;2, and AtNAP1; 3) have been reported to function as positive regulators of ABA signaling responses.

46MicroRNAs (miRNAs) are short non-coding RNA that regulates gene expression post-transcriptionally by complementing the target mRNAs causing target mRNA degradation or translational repression. miRNAs can exert epigenetic regulation of gene expression by downregulation of key epigenetic regulators such as DNA methyltransferases and histone deacetylases. miRNA genes with changed expression in response to ABA have been identified in plants. In Arabidopsis, ABA upregulates the expression of miR159, miR393, and miR402, whereas miR169a can be downregulated by ABA. The predicted target of miR402 is the transcript of Demeter-like protein 3 (DML3), a DNA glycosylase involved in DNA demethylation. It has been hypothesized that miR402 under ABA induction reduces the transcript level of DML3 resulting in repression of DML3-targeted genes. ABA-induced miR159 accumulation can cause MYB33 and MYB101 transcript degradation, which is believed to desensitize ABA signaling during stress responses. miR169a targets the transcript of NFYA5, a transcription factor vital in regulating plant development and stress responses. Downregulation of miR169 by ABA can contribute to lead to increased expression of NFYA5 and promote drought resistance. In rice, ABA downregulates miR167 expression. Interestingly, drought treatment can decrease miR167 expression and increase the expression of PLD (phospholipase D), which is the potential target of miR167. As PLD is an important regulator of ABA response and stress signaling in plants, miR167 is likely to be involved in regulating ABA-dependent stress signaling networks. Global expression profiling in rice has identified 34 miRNAs whose expression is induced or suppressed by ABA treatment. Most of the ABA-responsive miRNAs (32) were responsive to at least one of the stress (drought, salt, or cold) treatments, suggesting that they are crucial for ABA-related stress pathways.

47The current knowledge indicates that epigenetic modulation through DNA methylation, histone acetylation, and microRNA action, is critical to ABA-mediated stress signaling. A better understanding of epigenetics-mediated genome-environment interaction might provide new avenues for improving plant tolerance to abiotic stress.

48The mitogen-activated protein kinase (MAPK) cascade is an important signaling mechanism for regulating cellular responses to various stimuli including osmotic stress. It is composed of an MAPK, MAPK kinase (MAPKK), and MAPKK kinase (MAPKKK). These three kinases can carry out phosphorylation relay from MAPKKK to MAPKK to MAPK. Twenty of MAPKs, 10 MAPKKs, and 80 MAPKKKs have been identified in Arabidopsis genome by structural and functional genome analysis. A similar number of genes encoding MAPKs, MAPKKs, and MAPKKKs have been found in other plant’s genomes. For example, rice genome contains 17 MAPK genes, 8 MAPKK genes, and 74 MAPKKK genes. Earlier study reported that the MEKK1 (MAPKKK) transcript is up-regulated in response to various environmental stresses such as high salinity, low temperature, and mechanical stress., proposed the complete MAPK cascade functioning model MEKK1-MEKK2-MPK4/MPK6 for abiotic stress signaling. Few years later, some study showed that this model has a significant role in abiotic stress signaling. Many studies reported that MAPK cascades are involved in several ABA responses such as seed germination, guard cell signaling, and antioxidant defense.

49It has been shown that ABA can affect the transcriptional regulation, protein accumulation, and stability of different component in MAPK cascade. For example, transcriptional expression of MAPKs (MPK3, MPK5, MPK7, MPK18, MPK20, MKK9), MAPKKKs (Raf6, Raf12, and Raf35), MAPKKK1(ANP1) and MAPKKK14-19 in Arabidopsis is induced by ABA treatment, suggesting that they play a significant role in ABA signaling. However, the functions of many MAPK pathway genes are still unknown. Similarly in case of rice, ABA induces transcriptional activation of several MAPKs like OsMAP1(OsMAPK5), OsMAPK2, OsMSRMK2, OsMSRMK3, OsMAPK44, OsBIMK1, DMS1, OsEDR1, OsSIPK, OsWJUMK1 and OmMKK1. Similar to Arabidopsis and rice, ABA also induces MAPKs in maize like ZmMPK7, ZmPK17, ZmSIMK1, and ZmMPK3. Recently reported that ZmMKK3 is involved in osmotic stress and ABA responses. In pea, p45MAPK is ABA-activated MAPK involved in guard cell signaling. reported that a double knockout mutant (pp2c5/ap2c1) of the MAP-interacting phosphatases showed increased ABA-dependent activation of MPK3 and MPK6, which gives ABA sensitivity and suggests that MAPK cascade involving MPK3/MPK6 adversely regulates ABA signaling in plants.

50Recently demonstrated that a complete MAPK cascade (comprised of MAP3K17/18, MKK3, and the MAPKs MPK1/2/7/14) can be regulated by ABA core signaling module. They performed yeast two-hybrid analysis against all MAP2Ks and identified that only MAP2K is interacting with MAP3K17 and 18. All plants genome contain one gene coding for such an MKK3-like MAP2K, suggesting that this fusion occurred early and were conserved during evolution. showed that a loss of function of MKK3 totally abolished ABA-dependent MPK17 activation, suggesting that this MAP2k is a significant factor of the ABA-triggered MAPK pathway. They also reported that ABA-triggered MAPK pathway depends on the transcription and protein synthesis of the MAP3Ks, MAP3K17, and MAP3K18. They also showed that ABA core machinery is required for the activation of the MAP3k17/18-MKK3-MPK1/2/7/14. The knowledge of crosslinks between MAPK cascade and ABA signaling should provide valuable information on the complex mechanism of plant stress adaptation, which helps to enhance crop stress tolerance that will be helpful for future sustainable agriculture.

51Abscisic acid and auxin control many aspects of plant growth and development together, mostly in opposing directions. For examples, the expression of AUXIN RESPONSE FACTOR 2 (ARF2) induced by ABA and arf2 mutants exhibited enhanced ABA sensitivity in seed germination and primary root growth. ABA treatment reduces the cell division and alters the auxin distribution more in arf2 mutants as compared to wildtypes. Mutant arf2 showed shorter roots under ABA application. They also suggested that there is a significant mechanism in ABA inhibiting the primary root growth through mediating cell division in root tips. ABA inhibits seedling growth through enhancing auxin signaling. ABA and auxin also control seed dormancy through gene expression network involving ABSCISIC ACID INSENSITIVE 3 (ABI3) transcription factor. Auxin acts upstream of the major regulator of seed dormancy, ABI3, by recruiting AUXIN RESPONSE FACTOR 10 and AUXIN RESPONSE FACTOR 16 to control the expression of ABI3 during seed germination. They also showed that auxin is essential for seed dormancy and ABA inhibition of seed germination, signifying that the roles of auxin and ABA in seed dormancy are mutually dependent. In the ABA-mediated process, auxin functions in two ways: auxin activates the ABA response or stimulates the ABA biosynthesis response. In radical protrusion assayed, both exogenous and endogenous indole acetic acid (IAA) inhibited seed germination, indicating that ABA and auxin act synergistically to inhibit seed germination. They also observed that equal amount of IAA did not inhibit the seed germination in the absence of ABA, indicating that the auxin-mediated inhibition of seed germination is dependent on ABA. Further, osmotically induced ABA increases basipetal auxin transport through elevated AUX1 (an auxin influx transporter) and PIN2 (an auxin efflux transporter) levels. Therefore, ABA and auxin interact with crosstalk network via auxin response pathways in regulating plant growth.

52Abscisic acid and cytokinin also appear to crosstalk each other. Cytokinin degradation is mediated by cytokinin oxidase enzymes which are encoded by CYTOKININ OXIDASE (CKX) multigene families with a varying number of members. For example, the Arabidopsis genome contains 7 CKX genes (CKX1-CKX7). Microarray and RT-PCR analysis showed that ABA downregulates CKX genes (CKX1, CKX3, CKX4, and CKX6). During stress conditions, cytokinin receptor kinases (AHK2 and AHK3) negatively regulate ABA as well as osmotic stress responsive gene expression, whereas, cytokinin-deficient mutants have increased survival rates under stress. In addition, AHK2 and AHK3 are involved in mediating cold stress response by inhibiting ABA signaling. Therefore, ABA and cytokinin have crosstalk to regulate stress responses.

53Abscisic acid and ethylene interact to control the regulation of stomatal closure. ABA and ethylene also control the increased ethylene concentration in leaves. The ethylene delays stomata closure by inhibiting the ABA signaling pathway. ABA inhibits ethylene biosynthesis by positively regulating ethylene response factor 11 (ERF11) via LONG HYPOCOTYL5 (HY5) transcription factor to repress expression of ethylene biosynthesis gene (ACS5), which encodes the rate-limiting enzyme in ethylene biosynthesis. The HY5 transcription factor serves as an important molecular link between ABA and ethylene biosynthesis. They proposed a model suggesting that the HYF-AtERF11 regulon is a key factor modulating ABA-regulated ethylene biosynthesis.

54There is a complex interplay between ABA-signaling pathway and jasmonate (JA) regulating plant defense and gene expression. For example, exogenous ABA treatment could suppress both basal and JA activated transcription from defense gene. In contrast, mutation of the ABA synthesis genes aba1 and aba2 resulted in upregulation of JA-responsive defense gene. These results indicate that the antagonistic interactions between multiple components of ABA and the JA-ethylene signaling pathways to modulate defense and stress-responsive gene expression in response to abiotic and biotic stresses. Transcription factor MYC2 is a master regulator of most aspects of the JA-signaling pathway in Arabidopsis. Transgenic plants overexpressing MYC2 gene had higher sensitivity to ABA and several ABA-inducible genes upregulated in the transgenic plants whereas Ds insertion mutant myc2 was less sensitive to ABA and showed reduced ABA-induced gene expression. Thus, MYC2 is proposed as an integrative hub for the regulation of both JA and ABA signaling in Arabidopsis.

55Thus, ABA is an important phytohormone which regulates plant growth and development in response to environmental stresses interacting through other plant hormones. The molecular mechanisms for the complex signaling networks between ABA and other hormones still need to study for further details in future.

56Due to growing population and global climate change food demand is increasing day by day. Thus, to fulfill the required demand, food production must be increased. Therefore, understanding abiotic stress tolerance in the plant has important, and broad spread implications that can not be understated. ABA is a vital hormone and acts as a central regulator of different plant stresses like drought, low temperature, and salinity. Due to the advancement of molecular genetic and genome-wide technologies, a deeper understanding of the underlying mechanisms of the involvement of ABA in stress tolerance is achieved, although more is yet to be revealed. The different physiological reactions that ABA regulates have been described at molecular level like stomatal closure, change in gene expression and accumulation of osmoprotectants. Understanding of ABA signal transduction pathways and epigenetic modifications can be further exploited to produce better transgenic plants with improved stress tolerance without a yield penalty that can withstand adverse climatic conditions. Genetic regulation through cis-engineering can be accomplished by designing promoter targeted at tissue-specific expression through which plant dynamics can be further explored. Many efforts are still required to uncover in details of each product of a gene induced by ABA and their interacting partners to understand the complexity of stress signal transduction pathways. The source of ABA in guard cells is still not fully understood. The mechanisms by which the abiotic stress upregulate ABA biosynthesis genes are still needed to know. Furthermore, the molecular mechanisms of crosstalk between ABA and other phytohormone signaling pathways remain to be elucidated. Although many questions are still open, the current advances in ABA signaling in Arabidopsis pave the way to address the molecular events underlying stress responses in other plant species, with the prospect to improve the abiotic stress performance of crop plants. Recently, engineered ABA receptors by agrochemical engineering that provides the lots of opportunity in crop improvement program.

57SS, JL, and KR drafted the manuscript. SS and JL designed the figures. SS, JL, and KR revised the manuscript.

58The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.