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Necroptosis, pyroptosis and apoptosis: an intricate game of cell death

Damien Bertheloot, Eicke Latz, Bernardo S. Franklin

Cellular & Molecular Immunology · 2021 · Review · CC BY

doi:10.1038/s41423-020-00630-3

Abstract

Cell death is a fundamental physiological process in all living organisms. Its roles extend from embryonic development, organ maintenance, and aging to the coordination of immune responses and autoimmunity. In recent years, our understanding of the mechanisms orchestrating cellular death and its consequences on immunity and homeostasis has increased substantially. Different modalities of what has become known as ‘programmed cell death’ have been described, and some key players in these processes have been identified. We have learned more about the intricacies that fine tune the activity of common players and ultimately shape the different types of cell death. These studies have highlighted the complex mechanisms tipping the balance between different cell fates. Here, we summarize the latest discoveries in the three most well understood modalities of cell death, namely, apoptosis, necroptosis, and pyroptosis, highlighting common and unique pathways and their effect on the surrounding cells and the organism as a whole.

Full text

From PubMed Central, U.S. National Library of Medicine, as current on Oct 15, 2026. Paragraph numbers are ours, so an answer can point at one.

Introduction

Cell death has physiological and pathological functions. The cellular lifespan can range from a few days to many years, depending on the cell type. Many physiological processes require cell death for their function (e.g., embryonal development and immune selection of B and T cells). Hence, each day, billions of cells die and are quickly removed by phagocytes. This mechanism of dead cell removal/clearance operates smoothly under normal conditions, demonstrating the efficacy of phagocytic processes. However, this system can be overwhelmed when large numbers of cells die abruptly and accumulate, such as during infection, chronic inflammation, and tissue damage. Sudden and unrestrained cell death results in massive release of cellular contents into the extracellular space. Released molecules act as damage signals, known as danger-associated molecular patterns (DAMPs). The presence of DAMPs in the extracellular space elicits a robust immune response that recruits additional phagocytes and other immune cells to clear the threat and promote tissue repair. During infections, the presence of pathogen-associated molecular patterns (PAMPs) elicits specific antimicrobial immune responses to control the infection. In certain circumstances, cells can regulate (or “program”) their death to tailor immune responses, thereby changing the impact their death will have on the surroundings. The best-studied forms of programmed cell death are apoptosis, necroptosis, and pyroptosis. Additional types of programmed cell death that occur in particular cell toxicity states often induced by pharmacological treatments (e.g., anticancer therapies) have been reported. Whether these less-studied pathways have physiological functions and how they diverge from other better understood pathways requires further investigation. Of note, a nomenclature to distinguish the many and often intercrossed cell death pathways has been proposed. A dichotomy has long dominated the general understanding of how dying cells affect their surroundings: necrosis, regarded as a passive and highly inflammatory form of cell death, and apoptosis, considered to be highly coordinated and immunologically inert (or “silent”). While necroptosis and pyroptosis act as “whistle blowers”, resulting in the release of alarmins and other proinflammatory signals into the cellular surroundings, apoptosis is considered “silent” and dampens subsequent immune responses.

Although this simplistic view has blurred the intricate mechanisms separating these forms of cell death, recent studies have uncovered new effectors and cell death pathways and revealed a more complex and intertwined landscape of what we call cell death. Here, we review the current understanding of programmed cell death. We focus on apoptosis, necroptosis, and pyroptosis and on how these processes regulate the immune response.

Mechanisms of action and regulation of necroptosis

Apoptosis was long thought to be the only regulated cell death pathway. In addition, its counterpart necrosis was considered to be rather ‘clumsy’ and to culminate with the loss of membrane integrity and passive leakage of intracellular contents. It has now become clear that a nonapoptotic form of cell death exists that has evolved to detect pathogens and promote tissue repair. This type of regulated cell death, coined necroptosis, occurs following the activation of the tumor necrosis receptor (TNFR1) by TNFα, even though TNFα has long been considered an inducer of apoptosis.

Activation of other cellular receptors triggers necroptosis. These receptors include death receptors (i.e., Fas/FasL), Toll-like receptors (TLR4 and TLR3)– and cytosolic nucleic acid sensors such as RIG-I and STING, which induce type I interferon (IFN-I) and TNFα production and thus promote necroptosis in an autocrine feedback loop.– Most of these pathways trigger NFκB-dependent proinflammatory and prosurvival signals. However, additional inhibition of the proteolytic enzyme Caspase-8 by microbes or pharmacological agents triggers the necroptotic pathway (Fig. 1). Downstream of the abovementioned receptors, active RIPK1 is recruited within an oligomeric complex that includes FADD, caspase-8 and caspase-10., In the absence of caspase-8 activity, RIPK1 recruits and phosphorylates RIPK3, forming a complex called the ripoptosome., The RIPK1/RIPK3 complex recruits and phosphorylates MLKL, thus forming the necrosome., MLKL phosphorylation induces a conformational change leading to the exposure of a 4-helical bundle domain (4HBD). Initial studies speculated that the RIPK1/RIPK3/MLKL pathway induces cell death through mitochondrial destabilization. This effect occurs via a phosphoglycerate mutase family member 5 (PGAM5)- and dynamin-related protein 1 (DRP1)-dependent pathway. However, mice with genetic deficiency of Pgam5 or Drp1 display no alterations in TNF-induced necroptosis, challenging this theory., Further disproving the potential involvement of mitochondria in necroptosis induction, the use of the ROS scavenger butylated hydroxyanisole did not affect TNF-induced necroptosis. Instead, two nonexclusive models explain how MLKL compromises cellular integrity: (1) MLKL constitutes a platform at the plasma membrane for the opening of calcium or sodium ion channels, thus enabling ion influx, cell swelling, and rupture,, and (2) MLKL itself forms pores in the plasma membrane through interaction between a positively charged patch in the 4HBD and negatively charged phosphatidylinositol phosphates (PIPs) present at the membrane.– In addition, MLKL oligomerization and membrane translocation seem to depend on a specific inositol phosphate (IP) code. Indeed, Dovey and colleagues demonstrated that phosphorylation of MLKL by RIPK3 alone is not sufficient for MLKL translocation to the membrane. Instead, MLKL requires the interaction of its N-terminal domain with highly phosphorylated IPs (e.g., IP6). This interaction, in turn, displaces the sixth α-helix of MLKL, which acts as a molecular brace believed to inhibit interactions with the MLKL N-terminal domain and control MLKL oligomerization. In line with these results, expression of the MLKLD139V mutant, which alters the two-helix brace structure, endows MLKL with RIPK3-independent constitutive killing activity, causing lethal postnatal inflammation in homozygous mutant mice. Moreover, MLKL oligomerization was recently shown to dictate the kinetics and threshold of necroptotic cell death. Indeed, phosphorylated MLKL first assembles into cytosolic polymeric necrosomes and then traffics with tight junction proteins to the plasma membrane, where both accumulate to form micron-sized structures. Although mitochondrial damage and ROS production are not considered to be directly involved in the establishment of necroptotic cell death, a recent study by Yang and colleagues showed that RIPK3 instead has downstream effects on mitochondria: RIPK3 directly phosphorylates and activates the E3 subunit of the pyruvate dehydrogenase complex and promotes aerobic respiration and mitochondrial ROS production. This finding could explain the link between necroptosis and mitochondrial destabilization.

Given its powerful and nonreversible nature, the necroptotic pathway’s early steps must be heavily regulated. Indeed, upon TNFR1 engagement, RIPK1 is rapidly recruited to signaling complex I, where it interacts with TRADD and TRAF2. At this location, TRAF2 and TRAF5 control the polyubiquitylation of RIPK1 via cIAP1/2, limiting the cell death function of RIPK1.– Similarly, after TLR activation (e.g., by LPS or poly-(I:C)), the function of RIPK1/3 is regulated by cIAP1/2 and XIAP through ubiquitylation., Importantly, ubiquitylation of RIPK1 and RIPK3 not only prevents cell death but also is essential for NFκB-dependent induction of proinflammatory genes. Furthermore, low extracellular pH was recently shown to act on a highly conserved histidine (His151) in the amino acid sequence of RIPK1, thus inhibiting its kinase activity and preventing cell death. In addition to these in vitro data, generating knockin mice expressing Ripk1H151N would undoubtedly help determine the physiological function of this pH sensitivity of RIPK1.

Contributing to the “death signal”, CYLD deubiquitylates TRAF2 and RIPK1, allowing the formation of the ripoptosome.– The mitochondrial protein Smac further promotes necroptosis by triggering proteasomal degradation of cIAP1/2 and XIAP. Consequently, Smac mimetics have been developed as therapeutic tools against cancer cells or HIV-infected cells.– These agents and other anticancer drugs promote the formation of the ripoptosome through depletion of XIAP and cIAP1/2 independent of death receptor activation.

The immune system has evolved a way to bypass inhibition upstream of RIPK3 as a rapid countermeasure to block viral spread. Indeed, the murine cytomegalovirus (MCMV) DNA genome was found to activate the DNA-dependent activator of IFN regulatory factor (DAI or ZBP1), which binds directly to RIPK3 through its RHIM domain, virtually bypassing RIPK1., More recently, Lim et al. proposed a more ambivalent role for DAI in regulating necroptosis in macrophages. These authors demonstrated that despite driving necroptosis in the absence of RIPK1, DAI protects autophagy-incompetent Atg16l1−/− cells from necroptosis. Thus, depending on the context, DAI acts as either an activator or a suppressor of necroptosis. Since inhibition of autophagy results in the accumulation of DAI, it can be speculated that a certain threshold concentration of DAI is necessary for it to execute its prosurvival function. However, precisely how these opposite functions of DAI are regulated remains to be elucidated.

Notably, DAI is not the only RHIM domain-containing protein capable of activating RIPK3 in the absence of RIPK1. Indeed, TRIF is also known to interact with and directly activate RIPK3 in the absence of RIPK1. Remarkably, during embryonic development, RIPK1 plays a crucial prosurvival role that is independent of its kinase activity.– Indeed, Ripk1−/− mice die soon after birth due to uncontrolled caspase-8- or RIPK3-dependent apoptosis or necroptosis, respectively. Presumably, RIPK1-RHIM usually acts as a “sponge” preventing the activation of RIPK3/MLKL signaling by TRIF or DAI, pathways that are currently identified as effectors of the lethality of Ripk1 knockout. Collectively, these data demonstrate the essential role of the RHIM domain interaction as both a trigger and a regulator of necroptosis. The RHIM-containing protein that is responsible for pressing the “RIPK3 trigger” seems to depend on the cellular context and the upstream pathway activated. A more extensive study of the regulatory processes involved in the induction of necroptosis is necessary to fully solve this puzzle. Further complicating the understanding of necroptosis’s regulatory mechanism, mouse and human MLKL orthologs have species-specific requirements for interaction with their cognate RIPK3 partners due to the coevolution of both the MLKL C-terminal pseudokinase domain and the RIPK3 kinase domain. Hence, although the mechanism of MLKL-dependent plasma membrane permeabilization is similar, direct transposition of regulatory mechanisms between species may be too simplistic and should be proposed cautiously.

Necroptosis in infection and sterile inflammation

Necroptosis has mainly been studied downstream of the activation of death domain receptors or pattern recognition receptors (PRRs) as one response to microbial infection. For example, in the context of Yersinia infection, RIPK3-mediated necroptosis is beneficial to the host., On the other hand, lung infection with Staphylococcus aureus induces necroptotic epithelial cell death, which is detrimental to the host. Interestingly, recent work indicates that microbes can directly target the necroptotic pathway to prevent cell death and promote their replication. Indeed, the enterohemorrhagic Escherichia coli (EHEC)-expressed virulence effector NleB1 modifies arginine residues in TRADD, FADD, and RIPK1, which blocks apoptosis and necroptosis., Some viruses have also evolved immune evasion strategies to prevent cell death: the MCMV-encoded viral inhibitor of RIP activation (vIRA) directly targets the DAI-RIPK3 complex through its own RHIM domain, thus preventing necroptosis and allowing viral replication., Of note, vIRA was shown to prevent necroptosis downstream of Fas and TNFR1, or TLR3 and TLR4, by targeting RIPK1/RIPK3 or TRIF/RIPK3, respectively. Although MCMV-encoded vIRA induces NFκB early during infection, at later time points, it blocks NFκB-dependent cytokine induction and proinflammatory signaling downstream of TNFR1 by targeting RIPK1 and NEMO for proteasomal or lysosomal degradation, thus covering all loose ends.,, Similarly, HCMV has developed countermeasures to prevent necroptosis, but in contrast to those of MCMV, these actions of HCMV seem to happen downstream of RIPK3/MLKL activation. A recent study by Fletcher-Etherington et al. proposed HCMV-encoded vICA as an inhibitor of necroptosis through direct interaction with MLKL. In humans, herpes simplex virus-1 and -2 also encode the RHIM-containing proteins ICP6 and ICP10, which block TNF-induced necroptosis by preventing the interaction of RIPK1 and RIPK3 through a RHIM-mediated decoy. Interestingly, in mice, ICP6 has the opposite effect, as it induces necroptosis through direct interaction with RIPK1 and RIPK3, further underscoring the differences between mouse and human necroptotic mechanisms.

The fact that viruses have evolved tools to escape necroptotic cell death is a testimony to this pathway’s importance in fighting microbial infection. Once activated, necroptosis triggers a process of cellular autodestruction, resulting in passive release of cytokines, DAMPs, and PAMPs. These mediators provide proinflammatory cues that recruit immune cells to stimulate efficient antimicrobial responses and activate the tissue repair machinery. Upon cellular erosion, elements of the infecting microbe are released into the extracellular environment, where they activate well-known proinflammatory pathways through a large variety of PRRs.

In sterile inflammation, such as during the onset of a particular cancer, necroptosis is essential for the immune system to mount an adequate response. Low MLKL expression has been associated with poor prognosis in patients with breast, ovarian, gastric, colon, and pancreatic cancers. In animal studies, intratumoral delivery of an autoactive RIPK3 construct or the use of necroptotic cells as a vaccination strategy generated efficient antitumoral immune responses., Interestingly, effective antitumor immunity depends on the NFκB pathway rather than on MLKL-dependent disruption of cell integrity. This pattern indicates that cytokine release or other events (e.g., posttranslational modification of effector proteins) triggered by the NFκB pathway are important messengers released from dying cells. For instance, proper cross-priming of effector CD8+ T cells requires the RIPK1/RIPK3 pathway and NFκB signaling and is responsible for the antitumor immune response induced by necroptotic cell death. Hence, necroptosis is an essential proinflammatory cell death pathway not only because of the uncontrolled release of cellular content resulting from membrane permeabilization but also because of the well-regulated proinflammatory pathways triggered in parallel to necrosome assembly, which allow the expression of proinflammatory cytokines before cell disintegration.

Further demonstrating that there is more to necroptosis than passive release of cellular content, recent work by Tanzer et al. proposed the existence of a kinetically regulated necroptotic secretome. Using unbiased label-free mass spectrometry, the authors found that at early time points (3 h) following activation of necroptosis, myeloid cells boost the release of conventionally secreted proteins through the ER-Golgi apparatus. Moreover, dying cells also amplify the production of extracellular vesicles enriched with MLKL, a previously described necroptosis-counteracting mechanism., However, at later time points (5–7 h), the levels of cytokines usually released through the conventional secretory pathway (e.g., CCL2 and IL-8) are reduced in the secretome of necroptotic cells. Instead, late-stage necroptotic cells use lysosomal exocytosis for the release of intracellular content.

Interestingly, exocytosis has already been described as a membrane repair mechanism triggered upon membrane permeabilization and as an ancient mechanism to remove infecting microbes.– It is tempting to speculate that these processes of early shedding of MLKL from intact cells followed by lysosomal exocytosis-mediated membrane repair exist to buy more time for the cells to increase cytokine production and tailor an appropriate proinflammatory signal before cell integrity is lost. This theory fits with the finding that translation from mRNA coding for cytokines continues in necroptotic cells (triggered by TNF or viral infection) even after permeabilization of the plasma membrane to promote the recruitment of immune cells. In line with these findings, MLKL and RIPK3 levels in ICU patients’ peripheral blood showed little difference from those in peripheral blood from healthy donors upon arrival. However, MLKL and RIPK3 levels increase over time and are predictive of poor patient survival., Interestingly, RIPK3 plasma levels were significantly elevated in ICU patients needing ventilation, leading to ventilator-induced lung injury. It is worth noting that in the context of COVID-19, critically ill patients require ventilation, which, in some cases, is thought to induce ventilator-induced lung injury. A small study found that the plasma RIPK3 level was positively correlated with the severity of COVID-19 in the patients tested (16 patients total). These early findings warrant further investigation of a potential role for necroptosis in COVID-19 development and other mechanical ventilation-induced lung injuries. However, one must also point out that none of the mentioned studies used analysis methods specific for active MLKL or RIPK3 (i.e., phosphorylation-specific ELISA). Such tools are now available and will be required to conclusively determine the role of necroptosis in the development of acute or chronic inflammatory diseases via analysis of patient samples.

Nevertheless, since necroptosis plays a considerable role in the induction of inflammation, it is not surprising that necroptosis is involved in the onset of disease. Several animal studies have demonstrated a role for necroptosis in tissue damage induced by ischemia-reperfusion injury such as that occurring with stroke, kidney ischemia, myocardial infarction,, or organ transplantation. Furthermore, RIPK1 and RIPK3 have been implicated in the development of chronic inflammatory diseases such as chronic obstructive pulmonary disease,, rheumatoid arthritis, multiple sclerosis, and Crohn’s disease and in the exacerbation of TNF-induced systemic inflammatory response syndrome.,– However, since RIPK1 and RIPK3 have necroptosis-independent functions, it is difficult to decipher the proper role of necroptosis in models using pathway inhibition (e.g., using the RIPK1 inhibitor Nec-1) or Ripk1/Ripk3 gene deletion approaches. Some studies have already shown a role for RIPK3 in inducing MLKL-independent inflammation. Using tools such as knockin mice expressing mutants of RIPK1 or RIPK3 with specific domain alterations inhibiting only part of their function may help to separate the necroptotic effects from the NFκB-related proinflammatory functions of these multitasking proteins.

Pyroptosis: a master regulator of inflammation

Pyroptosis is a type of cell death culminating in the loss of plasma membrane integrity and induced by activation of so-called inflammasome sensors. These include the Nod-like receptor (NLR) family, the DNA receptor Absent in Melanoma 2 (AIM2) and the Pyrin receptor. Inflammasome sensors detect a variety of PAMPs and DAMPs released by infecting microbes or through dysregulated cellular pathways. Thus, inflammasomes constitute a strong defense against pathogens or cell stress, which results in lytic cell death, preventing microbial spread, while alerting the immune system of imminent danger. However, unbalanced activation of this essential physiological sentinel function leads to the development of pathological inflammation. NLRP3 is the inflammasome sensor most strongly associated with the development of uncontrolled inflammation. For instance, recent evidence points to a correlation between COVID-19 severity and NLRP3 activation by SARS-CoV-2 infection. Whether the activation of NLRP3 in these settings relates to its previously described sensing of viral RNA, or cellular perturbations remains to be investigated. NLRP3 has also long been studied for its role in chronic inflammatory diseases such as Alzheimer’s disease– and atherosclerosis, with a noticeable impact on health systems worldwide. We recently showed that prolonged intake of a Western diet triggers NLRP3-dependent epigenetic reprogramming of granulocyte/monocyte precursors in bone marrow. Interestingly, the NLRP3 systemic inflammatory signature induced by the Western diet remained imprinted in myeloid cells even after a change to a healthier diet. This is an excellent example of the extent to which pyroptotic cell death affects organisms and explains how crucial physiological control mechanisms are to avoiding undesired inflammation.

Mechanisms of inflammasome activation

Mechanistically, when activated, inflammasome sensors oligomerize and recruit the adapter protein apoptosis-associated speck-like protein containing a CARD (ASC), thus seeding the formation of micron-sized polymeric structures known as inflammasomes or “ASC specks” (Fig. 2). Within the canonical pathway, inflammasomes act as a platform for activating the proteolytic enzyme caspase-1, which dimerizes as a proform and generates the fully active p33/p10 species through autoproteolysis. Active caspase-1 can then process the cytokines interleukin (IL)-1β and IL-18, also expressed as proforms; thus, active caspase-1 is required for the maturation of these respective ILs into 17 and 18 kD active cytokines. Activation of caspase-1 also enables processing of gasdermin D (GSDMD) into a 30 kD fragment able to oligomerize and lock into the plasma membrane, thus forming pores.– GSDMD cleavage relies on the presence of its C-terminal domain for recruitment of caspase-1, while the GSDMD N-terminal domain exhibits propyroptotic activity. In more advanced stages, GSDMD pores lead to membrane destabilization and cell lysis, enabling the release of DAMPs such as HMGB1 that are too large to escape the cell through the pores. Adding to the complexity of pyroptosis, several additional caspases are implicated in a noncanonical pathway, directly targeting GSDMD for cleavage. Murine caspase-11 was first described as a caspase-1 interactor more than two decades ago. It was later accepted as an effector of LPS lethality in its own right– and was more recently shown to promote pyroptosis in the absence of caspase-1 by directly targeting GSDMD upon stimulation with intracellular LPS., In humans, detection of intracellular LPS is mediated by caspase-4 and -5, which also cleave GSDMD in the absence of caspase-1. Remarkably, these proinflammatory caspases not only mediate the lethality of intracellular LPS but also act as receptors. Indeed, caspase-4 and -11 interact directly with LPS, which causes their oligomerization and autoactivation. However, how LPS is detected by caspase-4 and -11 remained elusive until recently, when Santos et al. demonstrated that the activation of TLR4 by LPS initiates an IFN response that triggers the expression of guanylate-binding proteins (GBPs). GBPs are essential for the activation of caspase-11. In human cells, GBPs are recruited to the Salmonella bacterial surface after they escape the vacuole. GBP1 binds to LPS with high affinity, allowing the formation of a multimolecular complex with GBP2 and GBP4, which then promotes recruitment and activation of caspase-4. Even though caspase-11 and caspase-4 promote pyroptotic cell death, their mechanism differs from that of caspase-1. Indeed, they mediate pyroptosis without enabling maturation of the proinflammatory cytokines IL-1β or IL-18, long considered a signature of pyroptotic cell death. IL-1β and IL-18 still rely on NLRP3 activation by GSDMD-dependent K+ efflux and ASC/caspase-1-dependent downstream signaling. These findings highlight the dual role of GSDMD in pyroptosis—not only executing pyroptosis but also promoting its amplification. ASC specks themselves are released from pyroptotic cells and remain stable for several days in tissues or the circulation,, thus extending their proinflammatory potential. Consistent with their extracellular proinflammatory potential, extracellular ASC specks accumulate in the brain and act as seeds for amyloid-β and tau protein deposition and plaque formation, hallmarks of neuroinflammation.– Hence, the ability of intracellular LPS and GSDMD pores to activate NLRP3 may constitute a mechanism to further extend the scope and duration of the proinflammatory effect of pyroptosis.

Regulation of pyroptosis

After the activation of inflammasomes, the ESCRT-dependent membrane repair pathway first attempts to contain the damage inflicted by GSDMD pores. However, if this last attempt to survive is unsuccessful, GSDMD-mediated loss of membrane integrity results in pyroptosis. It is interesting to note that release of IL-1β and IL-18 does not require complete loss of membrane integrity, as both cytokines are released through GSDMD pores in the absence of membrane lysis (i.e., in the presence of glycine)., Membrane repair through the ESCRT pathway is thus preferentially a modulator of the immune response downstream of inflammasome activation by allowing cytokine release but limiting—to a certain extent—the uncontrolled release of cellular content. Moreover, in neutrophils, GSDMD pores downstream of NLRC4 activation are uncoupled from cell death but enable IL-1β secretion., This resistance of neutrophils to pyroptosis is possible because of the intracellular localization of GSDMD pores withing membranes of granules and autophagosomes, facilitating sustained release of mature IL-1β while preventing plasma membrane lysis. Adding to the understanding of GSDMD-independent release of IL-1β, Monteleone et al. used a combination of GSDMD knockout and overexpression of mature IL-1β to demonstrate that caspase-1 cleavage of pro-IL-1β is essential and sufficient for its release from macrophages. In this model, caspase-1 cleavage of GSDMD merely accelerated the release of IL-1β. They showed that a polybasic motif in mature IL-1β allows its relocation to plasma membrane areas enriched in the phospholipid PIP2. From those locations, active IL-1β may be released via membrane ruffling. Many GSDMD-independent mechanisms have been proposed, including packaging of IL-1β into secretory lysosomes, release in ectosomes or exosomes, and even release in secretory autophagosomes. The settings in which cells commit to full pyroptosis or restricted IL-1β release are not fully understood. The regulatory mechanisms governing this decision might be cell-specific and influenced by the local requirements and kinetics of IL-1β responses.

Furthermore, GSDMD knockout does not seem to block cell death entirely. In a study by Kayagaki et al., macrophages derived from two different Gsdmd−/− mouse strains could not rescue canonical inflammasome-mediated cell death as measured by the release of lactate dehydrogenase. This inability indicates that pyroptosis encompasses more than simply GSDMD-dependent membrane destabilization. In line with this finding, the group of Andrew Bowie recently described a role for the TLR-IL-1R domain-containing family protein SARM in uncoupling GSDMD activation from IL-1β release and pyroptosis. They showed that in macrophages, SARM inhibits IL-1β maturation by upstream regulation of NLRP3 activation while promoting mitochondrial depolarization-dependent pyroptosis. The same group previously described a role for SARM as an inhibitor of TLRs. Whether this newly identified role of SARM is linked to its function as a TLR antagonist (e.g., regulating cell priming upstream of inflammasome activation) remains to be investigated.

Recent advances in understanding the mechanisms modulating events upstream of GSDMD activation and pyroptosis have revealed several posttranslational modifications of NLRP3. NLRP3 can be ubiquitylated and targeted for proteasomal degradation by TRIM31 in peritoneal macrophages. Interestingly, LPS treatment increases the expression of TRIM31, indicating a potential regulatory feedback mechanism to diminish the inflammatory response. Similarly, in lung epithelial cells, the E3 ubiquitin ligase FBXL2 was proposed as another enzyme capable of preventing NLRP3 activation by targeting it to the proteasome. Another E3 ubiquitin ligase, MARCH 7, was shown to inhibit NLRP3 downstream of dopamine-induced D1 receptor signaling. Conversely, after priming by LPS, FBXL2 itself is ubiquitylated by FBXO3 and targeted to the proteasome, releasing the blockade of NLRP3. Moreover, the deubiquitinating enzyme BRCC3 was shown to directly deubiquitinate NLRP3, thus protecting it from proteasomal degradation. Another layer of NLRP3 regulation is its phosphorylation on Ser291 (or Ser295 in humans) by protein kinase A, which induces its K48- and K63-linked ubiquitination and subsequent proteasomal degradation., Interestingly, Golgi-specific protein kinase D was proposed to phosphorylate NLRP3 on the same serine residue and instead promote NLRP3 activation. This dichotomy underlines the multidimensional regulation of NLRP3, which depends not only on PTMs but also on its cellular localization. Other phosphorylation/dephosphorylation events control NLRP3 activity after priming. Song et al. showed that after LPS priming, NLRP3 is phosphorylated on Ser194 by c-Jun N-terminal kinase (JNK)1, which facilitates the oligomerization of NLRP3 upon activation by canonical stimuli. Another study showed that in monocytic cells, dephosphorylation of NLRP3 on Tyr861 by protein tyrosine phosphatase nonreceptor 22 (PTP22) induced NLRP3 activation. We showed that dephosphorylation of NLRP3 on Ser5 by phosphatase 2A is a prerequisite for its interaction with ASC and downstream activation of caspase-1 in macrophages. Whether these pathways synergize to tightly control NLRP3 activity remains elusive. It is somewhat more likely that these pathways are engaged in a cell type- and stimulus-specific manner, an explanation that would correspond better to the requirement for different upstream effectors and different subcellular localizations of NLRP3.

The regulation of NLRP3 function is the best-studied example of the tight regulation involved in the activity of inflammasome sensors and the downstream induction of pyroptosis. Other sensors, such as NLRP1 and NLRC4, are also regulated through a combination of ubiquitination and phosphorylation or require cleavage for their activation. Remarkably, much progress has recently been made in the understanding of NLRP1 activation and the identity of the NLRP1 ligand. In epithelial cells, both mouse NLRP1B and human NLRP1 require cleavage of their C-terminal CARD by pathogen-derived proteases to activate caspase-1.– While the existence of a potential ligand for human NLRP1 has long remained elusive, Bauernfried et al. have shown that NLRP1 senses double-stranded RNA molecules such as those generated by Semliki Forest virus replication. However, whether binding to dsRNA and cleavage of the NLRP1 C-terminal domain are interdependent remains to be elucidated. Interestingly, CARD8, another inflammasome receptor related to NLRP1 (also containing a C-terminal FIIND-CARD structure), was recently discovered. Normally repressed by dipeptidyl peptidase (DPP) 8 and 9, CARD8 is activated in CD4+ and CD8+ T cells treated with DPP8/9 inhibitors and induces an ASC-independent form of pyroptosis., CARD8 activation requires an autoprocessing step with subsequent degradation of its N-terminal region by the proteasome to free the C-terminal FIIND-CARD region, allowing direct recruitment of caspase-1.

The evolution of such complex regulatory mechanisms across all effector arms of pyroptosis is a clear testimony to the harmful effects of this form of cell death. Remarkably, the discovery of GSDMD rapidly commenced a race by many pharmaceutical companies to develop GSDMD inhibitors, which could constitute flexible options for treating a plethora of pyroptosis-related chronic inflammatory diseases. Time will tell whether one-shot blockade of all propyroptotic pathways is a viable clinical option.

Breaking the silence of apoptosis

Apoptosis is a mechanism of regulated cell death conserved across the animal kingdom that has been the subject of intensive research for the past three decades and was, for most of this period, believed to be the only regulated type of cell death. An essential feature of apoptosis is the release of cytochrome c from mitochondria, regulated by a balance between proapoptotic and antiapoptotic proteins of the BCL-2 family, initiator caspases (caspase-8, -9 and -10) and effector caspases (caspase-3, -6 and -7). Apoptosis culminates in the breakdown of the nuclear membrane by caspase-6, the cleavage of many intracellular proteins (e.g., PARP and lamin), membrane blebbing, and the breakdown of genomic DNA into nucleosomal structures., These events are hallmarks of apoptosis and are commonly used to identify the cell death pathway engaged (e.g., DNA laddering and caspase-3 and PARP cleavage).

Apoptotic pathways and regulation

Mechanistically, two main pathways contribute to the caspase activation cascade downstream of mitochondrial cytochrome c release: the intrinsic and extrinsic pathways (Fig. 3).

The intrinsic pathway is triggered by dysregulation of or imbalance in intracellular homeostasis by toxic agents or DNA damage. It is characterized by mitochondrial outer membrane permeabilization (MOMP), which results in the release of cytochrome c into the cytosol. MOMP and the release of cytochrome c trigger the formation of apoptosomes and caspase-3 activation and are generally considered the point of no return in apoptotic cell death. The release of cytochrome c to the cytosol is promoted by proapoptotic proteins of the BCL-2 family, such as BAX, BAK, and PUMA. This family can be further divided into activators (e.g., BIM, BID, and PUMA)– and sensitizers (e.g., BAD, NOXA, and BIK). Activator proteins bind directly to apoptosis’s main effectors (BAX and BAK), which undergo conformational changes allowing their oligomerization.– Oligomerized BAX and BAK form pores in the mitochondrial membrane, causing MOMP., Sensitizer proteins contribute to apoptosis by inhibiting antiapoptotic factors or controlling the cellular localization of BAX and BAK monomers., Interestingly, other members of the BCL-2 family, BCL-2 and BCL-XL, inhibit apoptosis.,– These antiapoptotic proteins possess two BCL-2 homology (BH3) domains, which form a binding groove that sequesters activator or sensitizer BCL-2 proteins or the BAX and BAK complexes., A fine balance of binding affinities and expression levels of BCL-2 proteins ultimately regulates sensitivity or resistance to apoptosis. This balance is further influenced by posttranslational modification, and the cytoplasmic localization of BCL-2 proteins. Furthermore, cyclin-dependent kinases moderate apoptosis by transcriptionally repressing sensitizers,, or stabilizing antiapoptotic factors such as Mcl-1.– The transcription factor p53, one of the first responders to DNA damage and a trigger of the DNA repair machinery and cell cycle arrest, is another proapoptotic regulator. P53 targets promoter regions that control the expression of several proapoptotic BCL-2 proteins.– These data emphasize the delicate balance of apoptotic processes, with both the pro- and antiapoptotic teams pulling hard on the rope in a “tug-of-death” game.

MOMP also induces the formation of the apoptosome, a massive complex comprising cytochrome c, apoptosis protease-activator factor 1 (Apaf-1), dATP, and procaspase-9.– The assembled apoptosome activates the apoptosis initiator caspase-9. Caspase-9, in turn, cleaves the proforms of the proteases caspase-3 and caspase-7 and unleashes their apoptotic executioner function.,,– Interestingly, similar to their roles in inhibiting RIPK1/RIPK3-dependent necroptosis, proteins of the IAP family (IAP1/2 and XIAP) can also inhibit caspase-3 activation.– Furthermore, XIAP interacts with caspase-9 and caspase-7, thus retaining tight control of the apoptotic process.,,– However, Smac and HTRA2, released with cytochrome c during MOMP, function as inhibitors of XIAP,,,– promoting apoptosis. Caspase-3 itself can further promote apoptosis by processing caspase-9 into a p10 fragment lacking the XIAP docking domain and thus evading inhibition. Once activated, as the last step of the apoptotic process, caspase-3 and caspase-7 cleave several other procaspases (i.e., caspase-2, -6, -8, and -10) into their active forms, creating an apoptosis-amplifying cascade.,,,,

The second arm of the apoptotic pathway, known as the extrinsic pathway, is initiated by activation of cell surface death receptors. Proapoptotic death receptors include TNFR1/2,, Fas,, and the TNF-related apoptosis-inducing ligand (TRAIL) receptors DR4,– and DR5.,– Upon activation by their ligands (i.e., TNFα, FasL or TRAIL, respectively), death receptors oligomerize to form platforms at the cell surface. This event leads to the recruitment of adapter proteins (TRADD and FADD) and the activation of the apoptotic initiator caspases caspase-8 and -10, forming the death-inducing signaling complex (DISC).– Activation of caspase-8 and -10 is regulated by a caspase-like protein, FLIP, also present in the DISC., Another protein regulating the activation of the extrinsic apoptotic pathway is RIPK1. Indeed, even before necroptosis was discovered, RIPK1 had long been known to be recruited to the DISC, interacting with FADD and TRADD through binding with their death domains.,, Through posttranslational modifications, RIPK1 can promote both a prosurvival NFκB-mediated pathway and a prodeath pathway either through apoptosis or, in the absence of active caspase-8, through necroptosis, as described earlier., At early stages of activation, recruitment of TRADD, procaspase-8, ubiquitinated RIPK1, and the regulatory protein FLIP to the DISC limits the proapoptotic function of caspase-8, while promoting the proinflammatory and NFκB-dependent signaling pathway.,, This prosurvival complex, also known as complex I, is later either internalized or completely detached from the receptor to promote the formation of complex II, which has proapoptotic activity., The importance of the integrity of complex I and RIPK1 ubiquitylation prior to the induction of apoptosis was recently underscored in a study in which targeting TRADD with specific small molecule inhibitors blocked apoptosis and activated the beclin-1-mediated autophagic pathway. Within complex II, procaspase-8 and procaspase-10 are activated through autocatalytic cleavage.,, This cleavage, in turn, activates effector caspases (i.e., caspase-3, -6 and -7) either directly through proteolytic cleavage– or indirectly by activating the BCL-2 protein family member BID, thus generating feedback into the intrinsic pathway and promoting MOMP.–

Apoptosis is anti-inflammatory but not silent

The existence of “Find me” or “Eat me” signals released during apoptosis to recruit phagocytic cells and promote cell clearance has been known for some time. However, the full regulatory effect of the released contents of apoptotic cells (i.e., secretome) is only beginning to be understood. Recently, Tanzer et al. found a specific secretome signature that distinguishes apoptosis from other forms of cell death. As part of this signature, apoptotic cells mainly release nucleosome components. Interestingly, this group also detected ectodomain portions of cell surface proteins shed by metalloproteinases (ADAM10/17), most of which were common to both necroptosis and apoptosis. Shedding of cell surface proteins enables dying cells to detach from their sites in the tissue and block signal transduction in dying cells. Furthermore, receptor shedding can have an anti-inflammatory effect through the generation of soluble decoy receptors. In line with the release of active anti-inflammatory signaling molecules from apoptotic cells, apoptotic extracellular vesicles (ApoEVs) have been shown to perform immunoregulatory functions. Indeed, during apoptosis, phosphatidylserine is actively externalized via a caspase-3/7-dependent mechanism activating the scramblase Xkr8., Once at the surface of ApoEVs, PS acts as an “eat me” signal. Notably, cancer cells have the ability to suppress the expression of Xkr8, a mechanism by which they evade detection by phagocytes. Furthermore, PS promotes the expression and secretion of the anti-inflammatory factor TGF-β by phagocytes, thus underlying its local and systemic immunosuppressive function., Further supporting a role for ApoEVs in shaping the immune response of surrounding cells, ApoEVs have been studied for their capacity to aid antigen presentation. Indeed, ApoEVs released from Mycobacterium tuberculosis-infected cells are engulfed by antigen-presenting cells and prime naive CD4+ and CD8+ T cells toward antimicrobial immunity.–

Recently, Medina et al. discovered that apoptotic lymphocytes and macrophages release specific anti-inflammatory metabolites while preserving their plasma membrane integrity. Importantly, this group showed that specific metabolic pathways remain active in apoptosis-committed cells and that the release of metabolites is a dynamic process regulated by caspase-1-dependent opening of pannexin-1 (PANX1) channels. Furthermore, this group found that these metabolites induce gene programs in neighboring cells after release, promoting suppression of inflammation, cell proliferation, and wound healing. Hence, apoptotic cells not only promote their own phagocytosis (i.e., through “find me” or “eat me” signals) but also actively dampen inflammation and promote tissue repair in their surroundings.

Apoptosis in health and disease

Apoptosis is an indispensable physiological mechanism of tissue formation during embryogenesis and even after birth, when constant cellular turnover and tissue regeneration are particularly essential. Indeed, essential regulatory mechanisms that depend on RIPK1 and caspase-8 orchestrate the fate of embryonic cells during development.– Apoptosis is also a necessary tool of the immune system for fighting infections and removing cells with irreparable DNA damage. For example, apoptosis is induced by release of granzyme family molecules from activated T cells and NK cells. Indeed, these proteolytic enzymes were found to target several caspases, or BID– to convert these mediators into their active form, thus bypassing upstream signals to force targeted cells toward apoptosis. Interestingly, BID is the main target of intracellular proteases upon exposure to cellular stress. Indeed, cathepsins, proteases generally restricted to the lysosomal compartment, are released into the cytosol after lysosomal damage, where they target BID., Similarly, calpain proteases, which have little activity at neutral pH and require high cytosolic calcium levels, were also shown to activate BID following ischemic reperfusion injury or cisplatin treatment., Because of their direct effect on apoptosis initiation, these proapoptotic pathways have been utilized in several therapeutic strategies for cancer., Furthermore, several antiapoptotic proteins (e.g., BCL-2, BCL-XL, and IAPs) are upregulated in cancer cells, thus inhibiting apoptosis and promoting tumor survival. Hence, Smac mimetics have been developed as endogenous proapoptotic therapies in cancer. Similarly, many other antiapoptotic factors are targeted by anticancer drugs using recombinant domain mimetics as decoys (e.g., BH3), engineered peptides as inhibitors of protein–protein interactions (e.g., stapled peptides), or small molecule drugs targeting a large variety of factors to either activate them (e.g., the BAX agonists SMBA1/3) or block them (e.g., the MCL-1 inhibitor AM-8621). Notably, p53 induces the expression of both proapoptotic BCL-2 family members and specific death receptors (i.e., Fas and DR5).,, Therefore, therapeutic strategies promoting p53 activity (e.g., cisplatin) may facilitate apoptosis induction through both the intrinsic and extrinsic pathways. Novel anticancer therapeutic strategies targeting caspases with small molecule drugs or by gene editing in solid tumors are under development.

In the context of infection, viruses have evolved a mechanism to modulate apoptosis by mimicking the host’s regulatory systems. Examples include human herpesvirus-8 and molluscipoxvirus, which express FLIP-like inhibitory proteins, coined v-FLIPs, that mimic host proteins and inhibit proapoptotic signaling by death receptors., Similarly to necroptosis, cytomegalovirus (CMV) has evolved mechanisms to counter apoptotic pathways. Human CMV expresses vMIA, which inhibits BAX by binding and sequestering it at the mitochondrial membrane., Subsequent studies also found that vMIA can interact with and inhibit BAK., Unlike human CMV, mouse CMV expresses two proteins, each possessing either BAX- or BAK-inhibitory properties. Mouse CMV-expressed vMIA interacts and blocks BAX,– while vIBO prevents BAK oligomerization. Hence, CMV has mastered strategies to evade two critical cell death pathways by generating inhibitors of crucial components of apoptosis and necroptosis. Although human CMV is known to activate the AIM2 inflammasome, no evidence that CMV directly prevents pyroptosis, except for its ability to partially downregulate NLRP3 priming in vitro, has been reported to date.

Crossing lines of regulated cell death

Cell death pathways have long been considered to function in parallel with little or no overlap. However, it is currently clear that apoptosis, necroptosis, and pyroptosis are tightly connected and can crossregulate each other.

The critical function of caspase-8 as a mediator of the apoptotic and necroptotic pathways was one of the earliest-discovered bridges between different types of cell death. Caspase-8 not only regulates apoptosis but is also a central component of the ripoptosome, where it represents a crucial switch for the cleavage of RIPK1 and RIPK3– and one of the TRAF2- or RIPK1-deubiquitylating enzymes, CYLD. In this way, caspase-8 prevents the formation of necrosomes and favors apoptosis over necroptosis. FADD-mediated activation of caspase-8 downstream of death receptor activation triggers apoptosis,– while the absence or pharmacological blockade of caspase-8 drives necroptosis. Interestingly, while caspase-8 seems to play a role in the stabilization of the ripoptosome, its proteolytic activity is required to prevent necroptosis. Hence, caspase-8 in the DISC and the ripoptosome is critical for both apoptosis and necroptosis. Moreover, several studies noted a link between the activation of the ripoptosome and caspase-1 and the release of IL-1β and IL-18 after bacterial infection.,, A study by Gurung et al. placed FADD and caspase-8 upstream of NLRP3 activation, noting that both molecules contribute to macrophage priming and activation of caspase-1 and IL-1β maturation. The same group then went on to show that influenza A virus (IAV) induces RIPK3/caspase-8-dependent cell death through activation of DAI followed by activation of NLRP3. It was then unclear whether the contributions of RIPK3 and caspase-8 to NLRP3 activation were mediated only by a priming effect. Indeed, the potential autocrine contribution of TNFα or IFN-I signaling induced downstream of TLR4 or DAI could partially explain these findings. Several studies have demonstrated that RIPK3 regulates caspase-8 activity and the subsequent activation of NLRP3 downstream of TLR or TNFR1/2.,– These studies showed that in the absence of RIPK3-ubiquitinating IAPs, stimulation with dsDNA, LPS, or TNFα triggers RIPK3 to activate caspase-8 in myeloid cells. This event promotes apoptosis and NLRP3-dependent caspase-1 activation and IL-1β release. However, in the presence of functional caspase-8, NLRP3 activation and IL-1β release did not require RIPK3 kinase activity or MLKL activation. More recent data show that under these conditions, caspase-8 promotes NLRP3 activation by cleaving GSDMD directly, thereby promoting pyroptosis downstream of TNF and providing protection against infection (e.g., Yersinia infection) in vivo.– In the absence of caspase-8, RIPK3 kinase activity and MLKL are necessary. However, it is still unclear how MLKL promotes NLRP3 activation in this context. Since active MLKL induces loss of membrane integrity, similar to GSDMD, MLKL-dependent K+ efflux may cause NLRP3 activation. Whether NLRP3 activation contributes to cell death via GSDMD under these conditions remains to be explored. Strikingly, caspase-8 activation downstream of the intrinsic apoptosis pathway (i.e., BAX/BAK-dependent mitochondrial destabilization followed by caspase-3/7 activation) has recently been connected to NLRP3 activation and the secretion of bioactive IL-1β from macrophages. Indeed, activation of BAX/BAK triggers proteasomal degradation of the ubiquitin ligase IAP, allowing caspase-8 activation by caspase-3/-7. Interestingly, although some researchers had already identified GSDMD and GSDME activation downstream of caspase-8 after Yersinia infection,– in the context of mitochondrial apoptosis, NLRP3 activation induced by K+ efflux seemed to be independent of GSDMD. Instead, apoptotic caspases (i.e., caspase-3/-7) inactivate GSDMD through cleavage at aspartate 88., Hence, the exact mechanism by which intrinsic apoptosis triggers NLRP3 activation remains unclear. The last piece of the puzzle was placed with the recent discovery that in macrophages, pannexin-1 (PANX1) channels induced during apoptosis drive NLRP3 activation., Indeed, downstream of intrinsic and extrinsic apoptosis, RIPK3-dependent activation of caspase-3 and subsequent maturation of PANX1 trigger K+ efflux, which in turn activates NLRP3 and the release of IL-1β independent of GSDMD or GSDME. However, PANX1 channels are dispensable for canonical and noncanonical inflammasome activation (in which GSDMD is critical). Another link between pyroptosis and apoptosis was recently identified by Tsuchiya et al. In macrophages, in the absence of GSDMD, activation of caspase-1 redirects cell fate toward caspase-3-, caspase-9- and BID-dependent apoptosis. This finding could explain the only partial reduction in Gsdmd−/− macrophage death described by Kayagaki et al. How caspase-1 triggers the activation of caspase-3 and further apoptosis remains to be clarified.

As another example of an immune response connecting different cell death pathways, RNA viruses induce NLRP3 activation and the subsequent release of IL-1β in a RIPK1/RIPK3-dependent and MLKL-independent manner. Viral infection triggers RIPK1/RIPK3-mediated phosphorylation of DRP1, resulting in mitochondrial damage and NLRP3 activation, presumably through the release of mitochondrial ROS. In light of the new data discussed here, RNA virus-induced NLRP3 activation could be the result of caspase-8 engagement downstream of mitochondrial destabilization and the subsequent activation of caspase-3/-7. This hypothesis is worth investigating. Other earlier studies showed that NLRP3 is activated by intracellular detection of bacterial or viral RNA and by synthetic nucleoside mimetics., Whether the RIPK1/RIPK3/MLKL pathway was involved in these experiments remains to be evaluated, taking into consideration a potential role for IFN-I signaling induction.

Further blurring the lines between cell death pathways, TAK1, also found in complex with RIPK1, FADD, and caspase-8 downstream of TNFR or TLR activation, has recently emerged as another prosurvival regulator of cell death. In macrophages, TAK1 deletion was shown to induce caspase-8-dependent cleavage of GSDMD after stimulation with TNFα or TLR ligands. Furthermore, a new concept has emerged where several players in different cell death pathways merge into a single complex called the PANoptosome. The first evidence of this oligomeric structure came from the work of the Kanneganti laboratory., This group first reported that deficiency or blockade of TAK1 induces NLRP3/RIPK1-dependent cell death. Interestingly, TAK1 blockade triggers proinflammatory pathways reminiscent of those induced by the priming step necessary for NLRP3 activation. Treatment of cells with TLR ligands markedly abolishes the requirement for RIPK1 kinase activity prior to activation of caspase-1 and other apoptotic or necroptotic caspases (e.g., caspase-3 and caspase-8). Expression of a kinase-dead version of RIPK1 was necessary and sufficient for activation of caspase-1 and cell death after 12 h of stimulation. Kinetic analysis revealed activation of MLKL in a RIPK3/caspase-8-dependent manner as early as 2 h after TLR or TNFR stimulation. In the context of previous studies by Lawlor et al.,,, early induction of apoptosis or necroptosis could explain the downstream activation of NLRP3/caspase-1 and the induction of pyroptosis. Further work from the same group proposed that several microbes can induce cell death via PANoptosis. Deletion of several important regulators of cell death pathways has shown that Salmonella preferentially induces cell death through pyroptosis, while IAV triggers cell death through RIPK3/caspase-8-dependent necroptosis. Listeria and VSV seem to induce cell death equally through pyroptosis and necroptosis, as only complete knockdown of caspase-1/11, RIPK3 and caspase-8 rescues cell survival. New data also implicate caspase-6 in the activation of DAI/RIPK3/MLKL followed by NLRP3/caspase-1 in macrophages infected with IAV. It is still unclear whether all pathways are triggered in parallel inside infected cells under these conditions or whether released cytokines and other mediators released from infected cells trigger a different cell death pathway in bystander cells. Analysis of the different cell death pathways engaged on a single-cell level could help deconvolute this issue.

Supporting the role of caspase-8 in pyroptosis, new data link caspase-8 to the formation of ASC specks in embryonic intestinal tissue. Using a combination of transgenic mice with deletion of cell death regulators, Newton and colleagues demonstrated that inactivation of procaspase-8 (i.e., through the loss-of-function C362A mutation) seeds the formation of ASC specks, thus promoting caspase-1-dependent cleavage of GSDMD and pyroptosis.

A recent study by Gitlin et al. added another key to caspase-8’s toolbox. In macrophages, downstream of TRIF-dependent TLRs (i.e., TLR3 and TLR4), activated caspase-8 cleaves the IFN-induced suppressor of cytokine production N4BP1, amplifying cytokine production and release. MyD88-dependent TLRs fail to target N4BP1, resulting in a reduced cytokine response. However, engagement of TNFR1 by TNFα followed by caspase-8 activation and N4BP1 cleavage allows TRIF-independent TLRs to induce cytokine production. Since coactivation of TLRs and TNFR can likely occur during pathogen infection in vivo, engagement of TNFR induces cleavage of N4BP1 by caspase-8 to allow TRIF-independent TLRs to enhance cytokine responses. Hence, caspase-8 is a critical node in signal integration by which TNF permits cytokine and chemokine production downstream of TRIF-independent TLRs.

Hence, caspase-8 is a central regulator of cell death, acting as a cellular compass to promote apoptosis, necroptosis, or pyroptosis depending on its posttranslational state and the cell type (Fig. 4). Regulators other than caspase-8 have emerged as gatekeepers between cell death pathways. For example, GBP1 was recently proposed to act as a microbe-specific switch enabling recognition of either Toxoplasma gondii DNA, inducing apoptosis through AIM2, or Salmonella LPS, instead promoting pyroptosis via caspase-4.,

Collectively, these data emphasize the tight crossregulation that exists between apoptosis, necroptosis, and pyroptosis and indicate the presence of bridges between the pathways to coordinate cell death should one pathway become compromised. These data also highlight that while apoptosis is less immunogenic than necroptosis or pyroptosis, it enables the release of proinflammatory signaling molecules such as IL-1β under specific conditions. Hence, cell death pathways are not independent entities acting in parallel. Instead, they must be considered flexible molecular tools generating a wide range of outcomes, emitting signals with a full spectrum of anti- or proinflammatory components. Rather than a punctual event, the nature of the “death signal” is likely to result from the tipping of a delicate balance between pro- and antideath signals. At that point, the state of the cell, especially the status of switch regulators such as caspase-8, determines the pathway to be executed.

Conclusion/perspectives

As summarized herein, many important discoveries have recently been made in the field of cell death. Several new players have been identified that often underline new connections bridging distinct cell death pathways. Cell death, as it turns out, is a very intricate game where distinct central players have the power to tip a fragile balance from life to death and from pro- to anti-inflammatory signals for the cell environment. The next years will certainly be exciting in the field as more light is shed on the complex regulatory mechanism that governs cell death. These years will also be a time during which new drugs are developed, enabling these discoveries to be utilized to either enhance (e.g., cancer treatments) or prevent (e.g., treatment of inflammatory diseases) cell death.

References 302

  1. 1.
  2. 2.

    Galluzzi L, et al. Molecular mechanisms of cell death: recommendations of the Nomenclature Committee on Cell Death 2018. Cell Death Differ. 2018;25:486-541.

    Not in our library10.1038/s41418-017-0012-4

  3. 3.

    Laster SM, Wood JG, Gooding LR. Tumor necrosis factor can induce both apoptic and necrotic forms of cell lysis. J. Immunol. 1988;141:2629-34, 7.

    Not in our library

  4. 4.

    Holler N, et al. Fas triggers an alternative, caspase-8–independent cell death pathway using the kinase RIP as effector molecule. Nat. Immunol. 2000;1:489-495.

    Not in our library10.1038/82732

  5. 5.

    He S, Liang Y, Shao F, Wang X. Toll-like receptors activate programmed necrosis in macrophages through a receptor-interacting kinase-3-mediated pathway. Proc. Natl Acad. Sci. USA. 2011;108:20054-20059.

    Not in our library10.1073/pnas.1116302108

  6. 6.

    Kaiser WJ, et al. Toll-like Receptor 3-mediated Necrosis via TRIF, RIP3, and MLKL. J. Biol. Chem. 2013;288:31268-31279.

    Not in our library10.1074/jbc.m113.462341

  7. 7.
  8. 8.

    Schock SN, et al. Induction of necroptotic cell death by viral activation of the RIG-I or STING pathway. Cell Death Differ. 2017;24:615-625.

    Not in our library10.1038/cdd.2016.153

  9. 9.

    Brault M, Olsen TM, Martinez J, Stetson DB, Oberst A. Intracellular nucleic acid sensing triggers necroptosis through synergistic type I IFN and TNF signaling. J. Immunol. 2018;200:2748-2756.

    Not in our library10.4049/jimmunol.1701492

  10. 10.

    Chen D, et al. PUMA amplifies necroptosis signaling by activating cytosolic DNA sensors. Proc. Natl Acad. Sci. USA. 2018;115:3930-3935.

    Not in our library10.1073/pnas.1717190115

  11. 11.

    Tenev T, et al. The ripoptosome, a signaling platform that assembles in response to genotoxic stress and loss of IAPs. Mol. Cell. 2011;43:432-448.

    Not in our library10.1016/j.molcel.2011.06.006

  12. 12.
  13. 13.

    Cho Y, et al. Phosphorylation-driven assembly of the RIP1-RIP3 complex regulates programmed necrosis and virus-induced inflammation. Cell. 2009;137:1112-1123.

    Not in our library10.1016/j.cell.2009.05.037

  14. 14.

    Li J, et al. The RIP1/RIP3 necrosome forms a functional amyloid signaling complex required for programmed necrosis. Cell. 2012;150:339-350.

    Not in our library10.1016/j.cell.2012.06.019

  15. 15.

    Zhao J, et al. Mixed lineage kinase domain-like is a key receptor interacting protein 3 downstream component of TNF-induced necrosis. Proc. Natl Acad. Sci. USA. 2012;109:5322-5327.

    Not in our library10.1073/pnas.1200012109

  16. 16.

    Murphy JM, et al. The pseudokinase MLKL mediates necroptosis via a molecular switch mechanism. Immunity. 2013;39:443-453.

    Not in our library10.1016/j.immuni.2013.06.018

  17. 17.

    Wang Z, Jiang H, Chen S, Du F, Wang X. The mitochondrial phosphatase PGAM5 functions at the convergence point of multiple necrotic death pathways. Cell. 2012;148:228-243.

    Not in our library10.1016/j.cell.2011.11.030

  18. 18.

    Remijsen Q, et al. Depletion of RIPK3 or MLKL blocks TNF-driven necroptosis and switches towards a delayed RIPK1 kinase-dependent apoptosis. Cell Death Dis. 2014;5:e1004-e1004.

    Not in our library10.1038/cddis.2013.531

  19. 19.
  20. 20.

    Cai Z, et al. Plasma membrane translocation of trimerized MLKL protein is required for TNF-induced necroptosis. Nat. Cell Biol. 2014;16:55-65.

    Not in our library10.1038/ncb2883

  21. 21.

    Chen X, et al. Translocation of mixed lineage kinase domain-like protein to plasma membrane leads to necrotic cell death. Cell Res. 2014;24:105-121.

    Not in our library10.1038/cr.2013.171

  22. 22.

    Dondelinger Y, et al. MLKL compromises plasma membrane integrity by binding to phosphatidylinositol phosphates. Cell Rep. 2014;7:971-981.

    Not in our library10.1016/j.celrep.2014.04.026

  23. 23.

    Su L, et al. A plug release mechanism for membrane permeation by MLKL. Structure. 2014;22:1489-1500.

    Not in our library10.1016/j.str.2014.07.014

  24. 24.

    Quarato G, et al. Sequential engagement of distinct MLKL phosphatidylinositol-binding sites executes necroptosis. Mol. Cell. 2016;61:589-601.

    Not in our library10.1016/j.molcel.2016.01.011

  25. 25.

    Dovey CM, et al. MLKL requires the inositol phosphate code to execute necroptosis. Mol. Cell. 2018;70:936-948.e7.

    Not in our library10.1016/j.molcel.2018.05.010

  26. 26.

    Hildebrand JM, et al. A missense mutation in the MLKL brace region promotes lethal neonatal inflammation and hematopoietic dysfunction. Nat. Commun. 2020;11:3150.

    Not in our library10.1038/s41467-020-16819-z

  27. 27.
  28. 28.

    Yang Z, et al. RIP3 targets pyruvate dehydrogenase complex to increase aerobic respiration in TNF-induced necroptosis. Nat. Cell Biol. 2018;20:186-197.

    Not in our library10.1038/s41556-017-0022-y

  29. 29.

    Tada K, et al. Critical roles of TRAF2 and TRAF5 in tumor necrosis factor-induced NF-κB activation and protection from cell death. J. Biol. Chem. 2001;276:36530-36534.

    Not in our library10.1074/jbc.m104837200

  30. 30.

    Ermolaeva MA, et al. Function of TRADD in tumor necrosis factor receptor 1 signaling and in TRIF-dependent inflammatory responses. Nat. Immunol. 2008;9:1037-1046.

    Not in our library10.1038/ni.1638

  31. 31.

    Pobezinskaya YL, et al. The function of TRADD in signaling through tumor necrosis factor receptor 1 and TRIF-dependent Toll-like receptors. Nat. Immunol. 2008;9:1047-1054.

    Not in our library10.1038/ni.1639

  32. 32.

    Zhang L, Blackwell K, Shi Z, Habelhah H. The RING domain of TRAF2 plays an essential role in the inhibition of TNFα-induced cell death but not in the activation of NF-κB. J. Mol. Biol. 2010;396:528-539.

    Not in our library10.1016/j.jmb.2010.01.008

  33. 33.

    Alvarez SE, et al. Sphingosine-1-phosphate is a missing cofactor for the E3 ubiquitin ligase TRAF2. Nature. 2010;465:1084-1088.

    Not in our library10.1038/nature09128

  34. 34.

    Mahoney DJ, et al. Both cIAP1 and cIAP2 regulate TNF -mediated NF- B activation. Proc. Natl Acad. Sci. USA. 2008;105:11778-11783.

    Not in our library10.1073/pnas.0711122105

  35. 35.

    Li H, Kobayashi M, Blonska M, You Y, Lin X. Ubiquitination of RIP is required for tumor necrosis factor α-induced NF-κB activation. J. Biol. Chem. 2006;281:13636-13643.

    Not in our library10.1074/jbc.m600620200

  36. 36.

    Moriwaki K, Balaji S, Ka-Ming Chan F. The death-inducing activity of RIPK1 is regulated by the pH environment. Sci. Signal. 2020;13:1-13.

    Not in our library10.1126/scisignal.aay7066

  37. 37.

    Trompouki, E. et al. CYLD is a deubiquitinating enzyme that negatively regulates NF-kB activation by TNFR family members. Nature. 424, 4 (2003).

    Not in our library10.1038/nature01803

  38. 38.
  39. 39.

    Brummelkamp, T. R., Nijman, S. M. B., Dirac, A. M. G. & Bernards, R. Loss of the cylindromatosis tumour suppressor inhibits apoptosis by activating NF-kB. Nature. 424, 5 (2003).

    Not in our library10.1038/nature01811

  40. 40.

    Mahul-Mellier A-L, et al. De-ubiquitinating protease USP2a targets RIP1 and TRAF2 to mediate cell death by TNF. Cell Death Differ. 2012;19:891-899.

    Not in our library10.1038/cdd.2011.185

  41. 41.

    Lee, E. G. et al. Failure to regulate TNF-induced NF-kB and Cell Death Responses in A20-deficient mice. Science. 289, 6 (2000).

    Not in our library10.1126/science.289.5488.2350

  42. 42.

    Wang L, Du F, Wang X. TNF-α induces two distinct caspase-8 activation pathways. Cell. 2008;133:693-703.

    Not in our library10.1016/j.cell.2008.03.036

  43. 43.

    Fulda S. Promises and challenges of Smac mimetics as cancer therapeutics. Clin. Cancer Res. 2015;21:5030-5036.

    Not in our library10.1158/1078-0432.ccr-15-0365

  44. 44.

    Lalaoui N, Vaux DL. Recent advances in understanding inhibitor of apoptosis proteins. F1000Research. 2018;7:1889.

    Not in our library10.12688/f1000research.16439.1

  45. 45.

    Kim Y, Anderson JL, Lewin SR. Getting the “Kill” into “Shock and Kill”: Strategies to Eliminate Latent HIV. Cell Host Microbe. 2018;23:14-26.

    Not in our library10.1016/j.chom.2017.12.004

  46. 46.

    Upton JW, Kaiser WJ, Mocarski ES. DAI/ZBP1/DLM-1 Complexes with RIP3 to Mediate Virus-Induced Programmed Necrosis that Is Targeted by Murine Cytomegalovirus vIRA. Cell Host Microbe. 2012;11:290-297.

    Not in our library10.1016/j.chom.2012.01.016

  47. 47.
  48. 48.

    Samie M, et al. Selective autophagy of the adaptor TRIF regulates innate inflammatory signaling. Nat. Immunol. 2018;19:246-254.

    Not in our library10.1038/s41590-017-0042-6

  49. 49.

    Rickard JA, et al. RIPK1 regulates RIPK3-MLKL-driven systemic inflammation and emergency hematopoiesis. Cell. 2014;157:1175-1188.

    Not in our library10.1016/j.cell.2014.04.019

  50. 50.

    Kaiser WJ, et al. RIP1 suppresses innate immune necrotic as well as apoptotic cell death during mammalian parturition. Proc. Natl Acad. Sci. USA. 2014;111:7753-7758.

    Not in our library10.1073/pnas.1401857111

  51. 51.

    Dillon CP, et al. RIPK1 blocks early postnatal lethality mediated by caspase-8 and RIPK3. Cell. 2014;157:1189-1202.

    Not in our library10.1016/j.cell.2014.04.018

  52. 52.

    Newton K, et al. RIPK1 inhibits ZBP1-driven necroptosis during development. Nature. 2016;540:129-133.

    Not in our library10.1038/nature20559

  53. 53.

    Davies KA, et al. Distinct pseudokinase domain conformations underlie divergent activation mechanisms among vertebrate MLKL orthologues. Nat. Commun. 2020;11:3060.

    Not in our library10.1038/s41467-020-16823-3

  54. 54.

    Philip NH, et al. Caspase-8 mediates caspase-1 processing and innate immune defense in response to bacterial blockade of NF- B and MAPK signaling. Proc. Natl Acad. Sci. USA. 2014;111:7385-7390.

    Not in our library10.1073/pnas.1403252111

  55. 55.

    Weng D, et al. Caspase-8 and RIP kinases regulate bacteria-induced innate immune responses and cell death. Proc. Natl Acad. Sci. USA. 2014;111:7391-7396.

    Not in our library10.1073/pnas.1403477111

  56. 56.
  57. 57.

    Li S, et al. Pathogen blocks host death receptor signalling by arginine GlcNAcylation of death domains. Nature. 2013;501:242-246.

    Not in our library10.1038/nature12436

  58. 58.

    Pearson JS, et al. A type III effector antagonizes death receptor signalling during bacterial gut infection. Nature. 2013;501:247-251.

    Not in our library10.1038/nature12524

  59. 59.

    Upton JW, Kaiser WJ, Mocarski ES. Virus Inhibition of RIP3-Dependent Necrosis. Cell Host Microbe. 2010;7:302-313.

    Not in our library10.1016/j.chom.2010.03.006

  60. 60.

    Mack C, Sickmann A, Lembo D, Brune W. Inhibition of proinflammatory and innate immune signaling pathways by a cytomegalovirus RIP1-interacting protein. Proc. Natl Acad. Sci. USA. 2008;105:3094-3099.

    Not in our library10.1073/pnas.0800168105

  61. 61.

    Upton JW, Kaiser WJ, Mocarski ES. Cytomegalovirus M45 cell death suppression requires Receptor-interacting Protein (RIP) Homotypic Interaction Motif (RHIM)-dependent interaction with RIP1. J. Biol. Chem. 2008;283:16966-16970.

    Not in our library10.1074/jbc.c800051200

  62. 62.

    Krause E, de Graaf M, Fliss PM, Dolken L, Brune W. Murine cytomegalovirus virion-associated protein M45 mediates rapid NF- B activation after infection. J. Virol. 2014;88:9963-9975.

    Not in our library10.1128/jvi.00684-14

  63. 63.
  64. 64.

    Omoto S, et al. Suppression of RIP3-dependent necroptosis by human cytomegalovirus. J. Biol. Chem. 2015;290:11635-11648.

    Not in our library10.1074/jbc.m115.646042

  65. 65.

    Fletcher-Etherington A, et al. Human cytomegalovirus protein pUL36: A dual cell death pathway inhibitor. Proc. Natl Acad. Sci. USA. 2020;117:18771-18779.

    Not in our library10.1073/pnas.2001887117

  66. 66.

    Guo H, et al. Herpes simplex virus suppresses necroptosis in human cells. Cell Host Microbe. 2015;17:243-251.

    Not in our library10.1016/j.chom.2015.01.003

  67. 67.

    Huang Z, et al. RIP1/RIP3 binding to HSV-1 ICP6 initiates necroptosis to restrict virus propagation in mice. Cell Host Microbe. 2015;17:229-242.

    Not in our library10.1016/j.chom.2015.01.002

  68. 68.

    Hu B, et al. Prognostic and clinicopathological significance of MLKL expression in cancer patients: a meta-analysis. BMC Cancer. 2018;18:736.

    Not in our library10.1186/s12885-018-4655-4

  69. 69.

    Aaes TL, et al. Vaccination with necroptotic cancer cells induces efficient anti-tumor immunity. Cell Rep. 2016;15:274-287.

    Not in our library10.1016/j.celrep.2016.03.037

  70. 70.

    Snyder, A. G. et al. Intratumoral activation of the necroptotic pathway components RIPK1 and RIPK3 potentiates antitumor immunity. Sci. Immunol. 4, eaaw2004 (2019).

    Not in our library10.1126/sciimmunol.aaw2004

  71. 71.

    Yatim, N., Jusforgues-Saklani, H., Orozco, S. & Schulz, O. RIPK1 and NF-kB signaling in dying cells determines cross-priming of CD8+ T cells. Science. 350, 328–334 (2015).

    Not in our library10.1126/science.aad0395

  72. 72.

    Tanzer MC, et al. Quantitative and dynamic catalogs of proteins released during apoptotic and necroptotic cell death. Cell Rep. 2020;30:1260-1270.e5.

    Not in our library10.1016/j.celrep.2019.12.079

  73. 73.

    Gong Y-N, et al. ESCRT-III acts downstream of MLKL to regulate necroptotic cell death and its consequences. Cell. 2017;169:286-300.e16.

    Not in our library10.1016/j.cell.2017.03.020

  74. 74.

    Yoon S, Kovalenko A, Bogdanov K, Wallach D. MLKL, the protein that mediates necroptosis, also regulates endosomal trafficking and extracellular vesicle generation. Immunity. 2017;47:51-65.e7.

    Not in our library10.1016/j.immuni.2017.06.001

  75. 75.

    Andrews NW. Lysosomes and the plasma membrane. J. Cell Biol. 2002;158:389-394.

    Not in our library10.1083/jcb.200205110

  76. 76.

    Ono K, Wang X, Han J. Resistance to tumor necrosis factor-induced cell death mediated by PMCA4 deficiency. Mol. Cell. Biol. 2001;21:8276-8288.

    Not in our library10.1128/mcb.21.24.8276-8288.2001

  77. 77.

    Reddy A, Caler EV, Andrews NW. Plasma membrane repair is mediated by Ca2+-regulated exocytosis of lysosomes. Cell. 2001;106:157-169.

    Not in our library10.1016/s0092-8674(01)00421-4

  78. 78.

    Miao Y, Li G, Zhang X, Xu H, Abraham SN. A TRP channel senses lysosome neutralization by pathogens to trigger their expulsion. Cell. 2015;161:1306-1319.

    Not in our library10.1016/j.cell.2015.05.009

  79. 79.

    Orozco SL, et al. RIPK3 activation leads to cytokine synthesis that continues after loss of cell membrane integrity. Cell Rep. 2019;28:2275-2287.e5.

    Not in our library10.1016/j.celrep.2019.07.077

  80. 80.

    Vucur M, et al. Elevated serum levels of mixed lineage kinase domain-like protein predict survival of patients during intensive care unit treatment. Dis. Markers. 2018;2018:1-8.

    Not in our library10.1155/2018/1983421

  81. 81.

    Ma KC, et al. Circulating RIPK3 levels are associated with mortality and organ failure during critical illness. JCI Insight. 2018;3:e99692.

    Not in our library10.1172/jci.insight.99692

  82. 82.

    Siempos II, et al. RIPK3 mediates pathogenesis of experimental ventilator-induced lung injury. JCI Insight. 2018;3:e97102.

    Not in our library10.1172/jci.insight.97102

  83. 83.

    Nakamura H, et al. Serum levels of receptor-interacting protein kinase-3 in patients with COVID-19. Crit. Care. 2020;24:484.

    Not in our library10.1186/s13054-020-03209-6

  84. 84.

    Rodriguez DA, et al. Characterization of RIPK3-mediated phosphorylation of the activation loop of MLKL during necroptosis. Cell Death Differ. 2016;23:76-88.

    Not in our library10.1038/cdd.2015.70

  85. 85.

    Degterev A, et al. Chemical inhibitor of nonapoptotic cell death with therapeutic potential for ischemic brain injury. Nat. Chem. Biol. 2005;1:112-119.

    Not in our library10.1038/nchembio711

  86. 86.

    Linkermann A, et al. Two independent pathways of regulated necrosis mediate ischemia-reperfusion injury. Proc. Natl Acad. Sci. USA. 2013;110:12024-12029.

    Not in our library10.1073/pnas.1305538110

  87. 87.

    Luedde M, et al. RIP3, a kinase promoting necroptotic cell death, mediates adverse remodelling after myocardial infarction. Cardiovasc. Res. 2014;103:206-216.

    Not in our library10.1093/cvr/cvu146

  88. 88.

    Newton K, et al. RIPK3 deficiency or catalytically inactive RIPK1 provides greater benefit than MLKL deficiency in mouse models of inflammation and tissue injury. Cell Death Differ. 2016;23:1565-1576.

    Not in our library10.1038/cdd.2016.46

  89. 89.

    Lau A, et al. RIPK3-mediated necroptosis promotes donor kidney inflammatory injury and reduces allograft survival: RIPK3-mediated necroptosis and renal allograft injury. Am. J. Transplant. 2013;13:2805-2818.

    Not in our library10.1111/ajt.12447

  90. 90.

    Pouwels SD, et al. Cigarette smoke-induced necroptosis and DAMP release trigger neutrophilic airway inflammation in mice. Am. J. Physiol. -Lung Cell. Mol. Physiol. 2016;310:L377-L386.

    Not in our library10.1152/ajplung.00174.2015

  91. 91.

    Mizumura K, et al. Mitophagy-dependent necroptosis contributes to the pathogenesis of COPD. J. Clin. Investig. 2014;124:3987-4003.

    Not in our library10.1172/jci74985

  92. 92.
  93. 93.

    Ofengeim D, et al. Activation of necroptosis in multiple sclerosis. Cell Rep. 2015;10:1836-1849.

    Not in our library10.1016/j.celrep.2015.02.051

  94. 94.

    Günther C, et al. Caspase-8 regulates TNF-α-induced epithelial necroptosis and terminal ileitis. Nature. 2011;477:335-339.

    Not in our library10.1038/nature10400

  95. 95.

    Linkermann A, et al. Dichotomy between RIP1- and RIP3-mediated necroptosis in tumor necrosis factor-α-induced shock. Mol. Med. 2012;18:577-586.

    Not in our library10.2119/molmed.2011.00423

  96. 96.

    Duprez L, et al. Intermediate domain of receptor-interacting protein kinase 1 (RIPK1) determines switch between necroptosis and RIPK1 kinase-dependent apoptosis. J. Biol. Chem. 2012;287:14863-14872.

    Not in our library10.1074/jbc.m111.288670

  97. 97.

    Berger SB, et al. Cutting edge: RIP1 kinase activity is dispensable for normal development but is a key regulator of inflammation in SHARPIN-deficient mice. J. Immunol. 2014;192:5476-5480.

    Not in our library10.4049/jimmunol.1400499

  98. 98.

    Polykratis A, et al. Cutting edge: RIPK1 kinase inactive mice are viable and protected from TNF-induced necroptosis in vivo. J. Immunol. 2014;193:1539-1543.

    Not in our library10.4049/jimmunol.1400590

  99. 99.

    Rodrigues TS, et al. Inflammasomes are activated in response to SARS-CoV-2 infection and are associated with COVID-19 severity in patients. J. Exp. Med. 2020;218:15.

    Not in our library10.1084/jem.20201707

  100. 100.

    Kanneganti T-D, et al. Bacterial RNA and small antiviral compounds activate caspase-1 through cryopyrin/Nalp3. Nature. 2006;440:233-236.

    Not in our library10.1038/nature04517

  101. 101.

    Kanneganti T-D, et al. Critical role for cryopyrin/Nalp3 in activation of caspase-1 in response to viral infection and double-stranded RNA. J. Biol. Chem. 2006;281:36560-36568.

    Not in our library10.1074/jbc.m607594200

  102. 102.

    Heneka MT, et al. NLRP3 is activated in Alzheimer’s disease and contributes to pathology in APP/PS1 mice. Nature. 2013;493:674-678.

    Not in our library10.1038/nature11729

  103. 103.

    Venegas C, et al. Microglia-derived ASC specks crossseed amyloid-β in Alzheimer’s disease. Nature. 2017;552:355-361.

    Not in our library10.1038/nature25158

  104. 104.

    Ising C, et al. NLRP3 inflammasome activation drives tau pathology. Nature. 2019;575:669-673.

    Not in our library10.1038/s41586-019-1769-z

  105. 105.
  106. 106.

    Duewell P, et al. NLRP3 inflammasomes are required for atherogenesis and activated by cholesterol crystals. Nature. 2010;464:1357-1361.

    Not in our library10.1038/nature08938

  107. 107.

    Christ A, et al. Western diet triggers NLRP3-dependent innate immune reprogramming. Cell. 2018;172:162-175.e14.

    Not in our library10.1016/j.cell.2017.12.013

  108. 108.

    Boucher D, et al. Caspase-1 self-cleavage is an intrinsic mechanism to terminate inflammasome activity. J. Exp. Med. 2018;215:827-840.

    Not in our library10.1084/jem.20172222

  109. 109.

    Aglietti RA, et al. GsdmD p30 elicited by caspase-11 during pyroptosis forms pores in membranes. Proc. Natl Acad. Sci. 2016;113:7858-7863.

    Not in our library10.1073/pnas.1607769113

  110. 110.

    Ding J, et al. Pore-forming activity and structural autoinhibition of the gasdermin family. Nature. 2016;535:111-116.

    Not in our library10.1038/nature18590

  111. 111.

    Liu X, et al. Inflammasome-activated gasdermin D causes pyroptosis by forming membrane pores. Nature. 2016;535:153-158.

    Not in our library10.1038/nature18629

  112. 112.

    Sborgi L, et al. GSDMD membrane pore formation constitutes the mechanism of pyroptotic cell death. EMBO J. 2016;35:1766-1778.

    Not in our library10.15252/embj.201694696

  113. 113.

    Wang K, et al. Structural mechanism for GSDMD targeting by autoprocessed caspases in pyroptosis. Cell. 2020;180:941-955.e20.

    Not in our library10.1016/j.cell.2020.02.002

  114. 114.
  115. 115.

    Wang S, et al. Murine caspase-11, an ICE-interacting protease, is essential for the activation of ICE. Cell. 1998;92:501-509.

    Not in our library10.1016/s0092-8674(00)80943-5

  116. 116.

    Kayagaki N, et al. Non-canonical inflammasome activation targets caspase-11. Nature. 2011;479:117-121.

    Not in our library10.1038/nature10558

  117. 117.

    Aachoui Y, et al. Caspase-11 protects against bacteria that escape the vacuole. Science. 2013;339:975-978.

    Not in our library10.1126/science.1230751

  118. 118.

    Hagar JA, et al. Activates caspase-11: implications in TLR4-independent endotoxic. Shock. Publ. Sci. 2013;13:1250-1254.

    Not in our library10.1126/science.1240988

  119. 119.

    Kayagaki N, et al. Noncanonical inflammasome activation by intracellular LPS independent of TLR4. Science. 2013;341:1246-1249.

    Not in our library10.1126/science.1240248

  120. 120.

    Kayagaki N, et al. Caspase-11 cleaves gasdermin D for non-canonical inflammasome signalling. Nature. 2015;526:666-671.

    Not in our library10.1038/nature15541

  121. 121.

    Shi J, et al. Cleavage of GSDMD by inflammatory caspases determines pyroptotic cell death. Nature. 2015;526:660-665.

    Not in our library10.1038/nature15514

  122. 122.

    Shi J, et al. Inflammatory caspases are innate immune receptors for intracellular LPS. Nature. 2014;514:187-192.

    Not in our library10.1038/nature13683

  123. 123.

    Santos, J. C. et al. LPS targets host guanylate-binding proteins to the bacterial outer membrane for non-canonical inflammasome activation. EMBO J. 37, e98089 (2018).

    Not in our library10.15252/embj.201798089

  124. 124.
  125. 125.

    Franklin BS, et al. The adaptor ASC has extracellular and ‘prionoid’ activities that propagate inflammation. Nat. Immunol. 2014;15:727-737.

    Not in our library10.1038/ni.2913

  126. 126.

    Baroja-Mazo A, et al. The NLRP3 inflammasome is released as a particulate danger signal that amplifies the inflammatory response. Nat. Immunol. 2014;15:738-748.

    Not in our library10.1038/ni.2919

  127. 127.

    Rühl S, et al. ESCRT-dependent membrane repair negatively regulates pyroptosis downstream of GSDMD activation. Science. 2018;362:956-960.

    Not in our library10.1126/science.aar7607

  128. 128.

    Evavold CL, et al. The pore-forming protein gasdermin D regulates interleukin-1 secretion from living macrophages. Immunity. 2018;48:35-44.e6.

    Not in our library10.1016/j.immuni.2017.11.013

  129. 129.

    Heilig R, et al. The Gasdermin-D pore acts as a conduit for IL-1β secretion in mice. Eur. J. Immunol. 2018;48:584-592.

    Not in our library10.1002/eji.201747404

  130. 130.
  131. 131.
  132. 132.

    Monteleone M, Stow JL, Schroder K. Mechanisms of unconventional secretion of IL-1 family cytokines. Cytokine. 2015;74:213-218.

    Not in our library10.1016/j.cyto.2015.03.022

  133. 133.

    Carty M, et al. Cell survival and cytokine release after inflammasome activation is regulated by the Toll-IL-1R protein SARM. Immunity. 2019;50:1412-1424.e6.

    Not in our library10.1016/j.immuni.2019.04.005

  134. 134.

    Carty M, et al. The human adaptor SARM negatively regulates adaptor protein TRIF–dependent Toll-like receptor signaling. Nat. Immunol. 2006;7:1074-1081.

    Not in our library10.1038/ni1382

  135. 135.
  136. 136.

    Han SH, et al. Lipopolysaccharide primes the NALP3 inflammasome by inhibiting its ubiquitination and degradation mediated by the SCFFBXL2 E3 ligase. J. Biol. Chem. 2015;290:18124-18133.

    Not in our library10.1074/jbc.m115.645549

  137. 137.

    Yan Y, et al. Dopamine controls systemic inflammation through inhibition of NLRP3 inflammasome. Cell. 2015;160:62-73.

    Not in our library10.1016/j.cell.2014.11.047

  138. 138.

    Py BF, Kim MS, Vakifahmetoglu-Norberg H, Yuan J. Deubiquitination of NLRP3 by BRCC3 critically regulates inflammasome activity. Mol. Cell. 2013;49:331-338.

    Not in our library10.1016/j.molcel.2012.11.009

  139. 139.

    Guo C, et al. Bile acids control inflammation and metabolic disorder through inhibition of NLRP3 inflammasome. Immunity. 2016;45:802-816.

    Not in our library10.1016/j.immuni.2016.09.008

  140. 140.

    Mortimer L, Moreau F, MacDonald JA, Chadee K. NLRP3 inflammasome inhibition is disrupted in a group of auto-inflammatory disease CAPS mutations. Nat. Immunol. 2016;17:1176-1186.

    Not in our library10.1038/ni.3538

  141. 141.

    Zhang Z, et al. Protein kinase D at the Golgi controls NLRP3 inflammasome activation. J. Exp. Med. 2017;214:2671-2693.

    Not in our library10.1084/jem.20162040

  142. 142.

    Song N, et al. NLRP3 phosphorylation is an essential priming event for inflammasome activation. Mol. Cell. 2017;68:185-197.e6.

    Not in our library10.1016/j.molcel.2017.08.017

  143. 143.

    Spalinger MR, et al. NLRP3 tyrosine phosphorylation is controlled by protein tyrosine phosphatase PTPN22. J. Clin. Investig. 2016;126:1783-1800.

    Not in our library10.1172/jci83669

  144. 144.

    Stutz A, et al. NLRP3 inflammasome assembly is regulated by phosphorylation of the pyrin domain. J. Exp. Med. 2017;214:1725-1736.

    Not in our library10.1084/jem.20160933

  145. 145.

    Baker PJ, et al. Posttranslational modification as a critical determinant of cytoplasmic innate immune recognition. Physiol. Rev. 2017;97:1165-1209.

    Not in our library10.1152/physrev.00026.2016

  146. 146.

    Sandstrom A, et al. Functional degradation: a mechanism of NLRP1 inflammasome activation by diverse pathogen enzymes. Science. 2019;364:11.

    Not in our library10.1126/science.aau1330

  147. 147.

    Chui AJ, et al. N-terminal degradation activates the NLRP1B inflammasome. Science. 2019;364:82-85.

    Not in our library10.1126/science.aau1208

  148. 148.

    Robinson, K. S. et al. Enteroviral 3C protease activates the human NLRP1 inflammasome in airway epithelia. Science eaay2002 10.1126/science.aay2002 (2002).

    Not in our library10.1126/science.aay2002

  149. 149.

    Bauernfried, S., Scherr, M. J., Pichlmair, A., Duderstadt, K. E. & Hornung, V. Human NLRP1 is a sensor for double-stranded RNA. Science eabd0811. 10.1126/science.abd0811 (2020).

    Not in our library10.1126/science.abd0811

  150. 150.

    Johnson, D. C. DPP8/9 inhibitors activate the CARD8 inflammasome in resting lymphocytes. Cell Death Dis.11, 628 (2020).

    Not in our library10.1038/s41419-020-02865-4

  151. 151.
  152. 152.

    Chui AJ. Activation of the CARD8 inflammasome requires a disordered region. Cell Rep. 2020;33:14.

    Not in our library10.1016/j.celrep.2020.108264

  153. 153.

    Nicholson DW, Thornberry NA. Caspases: killer proteases. Trends Biochem. Sci. 1997;22:299-306.

    Not in our library10.1016/s0968-0004(97)01085-2

  154. 154.

    Fraser A, Evan G. A license to kill. Cell. 1996;85:781-784.

    Not in our library10.1016/s0092-8674(00)81005-3

  155. 155.

    Liu X, Kim CN, Yang J, Jemmerson R, Wang X. Induction of apoptotic program in cell-free extracts: requirement for dATP and cytochrome c. Cell. 1996;86:147-157.

    Not in our library10.1016/s0092-8674(00)80085-9

  156. 156.

    Wang K, Yin XM, Chao DT, Milliman CL, Korsmeyer SJ. BID: a novel BH3 domain-only death agonist. Genes Dev. 1996;10:2859-2869.

    Not in our library10.1101/gad.10.22.2859

  157. 157.

    O’Connor L. Bim: a novel member of the Bcl-2 family that promotes apoptosis. EMBO J. 1998;17:384-395.

    Not in our library10.1093/emboj/17.2.384

  158. 158.

    Nakano K, Vousden KH. PUMA, a novel proapoptotic gene, is induced by p53. Mol. Cell. 2001;7:683-694.

    Not in our library10.1016/s1097-2765(01)00214-3

  159. 159.

    Cheng EH-YA, et al. BCL-2, BCL-XL sequester BH3 domain-only molecules preventing BAX- and BAK-mediated mitochondrial apoptosis. Mol. Cell. 2001;8:705-711.

    Not in our library10.1016/s1097-2765(01)00320-3

  160. 160.

    Kim H, et al. Stepwise activation of BAX and BAK by tBID, BIM, and PUMA initiates mitochondrial apoptosis. Mol. Cell. 2009;36:487-499.

    Not in our library10.1016/j.molcel.2009.09.030

  161. 161.

    Letai A, et al. Distinct BH3 domains either sensitize or activate mitochondrial apoptosis, serving as prototype cancer therapeutics. Cancer Cell. 2002;2:183-192.

    Not in our library10.1016/s1535-6108(02)00127-7

  162. 162.

    Kuwana T, et al. Bid, Bax, and lipids cooperate to form supramolecular openings in the outer mitochondrial membrane. Cell. 2002;111:331-342.

    Not in our library10.1016/s0092-8674(02)01036-x

  163. 163.

    Bleicken S, et al. Structural model of active Bax at the membrane. Mol. Cell. 2014;56:496-505.

    Not in our library10.1016/j.molcel.2014.09.022

  164. 164.

    Yang E, Zha J, Jockel J, Boise LH, Korsmeyer SJ. Bad, a heterodimeric partner for Bcl-x, and Bcl-2, displaces Bax and promotes cell death. Cell. 1995;80:285-291.

    Not in our library10.1016/0092-8674(95)90411-5

  165. 165.

    Yang J. Prevention of apoptosis by Bcl-2: release of cytochrome c from mitochondria blocked. Science. 1997;275:1129-1132.

    Not in our library10.1126/science.275.5303.1129

  166. 166.

    Kharbanda S, et al. Role for Bcl-xL as an inhibitor of cytosolic cytochrome C accumulation in DNA damage-induced apoptosis. Proc. Natl Acad. Sci. USA. 1997;94:6939-6942.

    Not in our library10.1073/pnas.94.13.6939

  167. 167.

    Nijhawan D. Elimination of Mcl-1 is required for the initiation of apoptosis following ultraviolet irradiation. Genes Dev. 2003;17:1475-1486.

    Not in our library10.1101/gad.1093903

  168. 168.

    Zha H, Aimé-Sempé C, Sato T, Reed JC. Proapoptotic protein Bax heterodimerizes with Bcl-2 and homodimerizes with Bax via a novel domain (BH3) distinct from BH1 and BH2. J. Biol. Chem. 1996;271:7440-7444.

    Not in our library10.1074/jbc.271.13.7440

  169. 169.

    Inuzuka H, et al. SCFFBW7 regulates cellular apoptosis by targeting MCL1 for ubiquitylation and destruction. Nature. 2011;471:104-109.

    Not in our library10.1038/nature09732

  170. 170.

    Del Re DP, et al. Mst1 promotes cardiac myocyte apoptosis through phosphorylation and inhibition of Bcl-xL. Mol. Cell. 2014;54:639-650.

    Not in our library10.1016/j.molcel.2014.04.007

  171. 171.

    Edlich F, et al. Bcl-xL retrotranslocates Bax from the mitochondria into the cytosol. Cell. 2011;145:104-116.

    Not in our library10.1016/j.cell.2011.02.034

  172. 172.

    Gojo I, Zhang B, Fenton RG. The Cyclin-dependent kinase inhibitor flavopiridol induces apoptosis in multiple myeloma cells through transcriptional repression and down-regulation of Mcl-1. Clin. Cancer Res. 2002;8:3527-3538.

    Not in our library

  173. 173.

    Chen S, et al. CDK inhibitors upregulate BH3-only proteins to sensitize human myeloma cells to BH3 mimetic therapies. Cancer Res. 2012;72:4225-4237.

    Not in our library10.1158/0008-5472.can-12-1118

  174. 174.

    Kour S, et al. CDK5 inhibitor downregulates Mcl-1 and sensitizes pancreatic cancer cell lines to navitoclax. Mol. Pharmacol. 2019;96:419-429.

    Not in our library10.1124/mol.119.116855

  175. 175.

    Lowman XH, et al. The proapoptotic function of Noxa in human leukemia cells is regulated by the kinase Cdk5 and by glucose. Mol. Cell. 2010;40:823-833.

    Not in our library10.1016/j.molcel.2010.11.035

  176. 176.

    Choudhary GS, et al. Cyclin E/Cdk2-dependent phosphorylation of Mcl-1 determines its stability and cellular sensitivity to BH3 mimetics. Oncotarget. 2015;6:16912-16925.

    Not in our library10.18632/oncotarget.4857

  177. 177.

    Miyashita T, Reed JC. Tumor suppressor p53 is a direct transcriptional activator of the human bax gene. Cell. 1995;80:293-299.

    Not in our library10.1016/0092-8674(95)90412-3

  178. 178.

    Lowe SW, Schmitt EM, Smitht SW, Osbornet BA, Jacks T. pS3 is required for radiation- induced apoptosis in mouse thymocytes. Nature. 1993;362:847-849.

    Not in our library10.1038/362847a0

  179. 179.

    Clarke AR, et al. Thymocyte apoptosis induced by pS3.dependent and independent pathways. Nature. 1993;362:849-852.

    Not in our library10.1038/362849a0

  180. 180.

    Cain K, Brown DG, Langlais C, Cohen GM. Caspase activation involves the formation of the aposome, a large (ϳ700 kDa) caspase-activating complex. J. Biol. Chem. 1999;274:22686-22692.

    Not in our library10.1074/jbc.274.32.22686

  181. 181.

    Srinivasula SM, Ahmad M, Fernandes-Alnemri T, Alnemri ES. Autoactivation of procaspase-9 by Apaf-1-mediated oligomerization. Mol. Cell. 1998;1:949-957.

    Not in our library10.1016/s1097-2765(00)80095-7

  182. 182.

    Li P, et al. Cytochrome c and dATP-dependent formation of Apaf-1/caspase-9 complex initiates an apoptotic protease cascade. Cell. 1997;91:479-489.

    Not in our library10.1016/s0092-8674(00)80434-1

  183. 183.

    Zou H, Henzel WJ, Liu X, Lutschg A, Wang X. Apaf-1, a human protein homologous to C. elegans CED-4, participates in cytochrome c–dependent activation of caspase-3. Cell. 1997;90:405-413.

    Not in our library10.1016/s0092-8674(00)80501-2

  184. 184.

    Acehan, D. et al. Three-dimensional structure of the apoptosome: implications for assembly, procaspase-9 binding, and activation. Mol. Cell10 (2002).

    Not in our library10.1016/s1097-2765(02)00442-2

  185. 185.

    Slee EA, et al. Ordering the cytochrome c–initiated caspase cascade: hierarchical activation of caspases-2, -3, -6, -7, -8, and -10 in a caspase-9-Dependent Manner. J. Cell Biol. 1999;144:281-292.

    Not in our library10.1083/jcb.144.2.281

  186. 186.

    Cain K, et al. Apaf-1 oligomerizes into biologically active ∼700-kDa and inactive ∼1.4-MDa apoptosome complexes. J. Biol. Chem. 2000;275:6067-6070.

    Not in our library10.1074/jbc.275.9.6067

  187. 187.

    Bratton SB. Recruitment, activation and retention of caspases-9 and -3 by Apaf-1 apoptosome and associated XIAP complexes. EMBO J. 2001;20:998-1009.

    Not in our library10.1093/emboj/20.5.998

  188. 188.

    Srinivasula SM, et al. A conserved XIAP-interaction motif in caspase-9 and Smac/DIABLO regulates caspase activity and apoptosis. Nature. 2001;410:112-116.

    Not in our library10.1038/35065125

  189. 189.

    Takahashi R, et al. A single BIR domain of XIAP sufficient for inhibiting caspases. J. Biol. Chem. 1998;273:7787-7790.

    Not in our library10.1074/jbc.273.14.7787

  190. 190.

    Suliman A, Lam A, Datta R, Srivastava RK. Intracellular mechanisms of TRAIL: apoptosis through mitochondrial-dependent and -independent pathways. Oncogene. 2001;20:2122-2133.

    Not in our library10.1038/sj.onc.1204282

  191. 191.

    Deveraux QL. IAPs block apoptotic events induced by caspase-8 and cytochrome c by direct inhibition of distinct caspases. EMBO J. 1998;17:2215-2223.

    Not in our library10.1093/emboj/17.8.2215

  192. 192.

    Chai J, et al. Structural basis of caspase-7 inhibition by XIAP. Cell. 2001;104:769-780.

    Not in our library10.1016/s0092-8674(01)00272-0

  193. 193.

    Huang Y. Structural basis of caspase inhibition by XIAP differential roles of the linker versus the BIR domain. Cell. 2001;104:781-790.

    Not in our library

  194. 194.

    Liu Z, et al. Structural basis for binding of Smac/DIABLO to the XIAP BIR3 domain. Nature. 2000;408:1004-1008.

    Not in our library10.1038/35050006

  195. 195.

    Wu G, et al. Structural basis of IAP recognition by Smac/DIABLO. Nature. 2000;408:1008-1012.

    Not in our library10.1038/35050012

  196. 196.

    Suzuki Y, et al. A serine protease, HtrA2, is released from the mitochondria and interacts with XIAP, inducing cell death. Mol. Cell. 2001;8:613-621.

    Not in our library10.1016/s1097-2765(01)00341-0

  197. 197.

    Hegde R, et al. Identification of Omi/HtrA2 as a mitochondrial apoptotic serine protease that disrupts inhibitor of apoptosis protein-caspase interaction. J. Biol. Chem. 2002;277:432-438.

    Not in our library10.1074/jbc.m109721200

  198. 198.

    Martins LM, et al. The serine protease Omi/HtrA2 regulates apoptosis by binding XIAP through a reaper-like motif. J. Biol. Chem. 2002;277:439-444.

    Not in our library10.1074/jbc.m109784200

  199. 199.

    Verhagen AM, et al. HtrA2 promotes cell death through its serine protease activity and its ability to antagonize inhibitor of apoptosis proteins. J. Biol. Chem. 2002;277:445-454.

    Not in our library10.1074/jbc.m109891200

  200. 200.

    Yang Q-H. Omi/HtrA2 catalytic cleavage of inhibitor of apoptosis (IAP) irreversibly inactivates IAPs and facilitates caspase activity in apoptosis. Genes Dev. 2003;17:1487-1496.

    Not in our library10.1101/gad.1097903

  201. 201.

    Van de Craen M, Declercq W, Van den Brande I, Fiers W, Vandenabeele P. The proteolytic procaspase activation network: an in vitro analysis. Cell Death Differ. 1999;6:1117-1124.

    Not in our library10.1038/sj.cdd.4400589

  202. 202.

    Chandler JM, Cohen GM, MacFarlane M. Different subcellular distribution of caspase-3 and caspase-7 following Fas-induced apoptosis in mouse liver. J. Biol. Chem. 1998;273:10815-10818.

    Not in our library10.1074/jbc.273.18.10815

  203. 203.

    Gon S, Gatanaga T, Sendo F. Involvement of two types of TNF receptor in TNF-α induced neutrophil apoptosis. Microbiol. Immunol. 1996;40:463-465.

    Not in our library10.1111/j.1348-0421.1996.tb01095.x

  204. 204.

    Pennica D, et al. Human tumour necrosis factor: precursor structure, expression and homology to lymphotoxin. Nature. 1984;312:724-729.

    Not in our library10.1038/312724a0

  205. 205.

    Itoh N, et al. The polypeptide encoded by the cDNA for human cell surface antigen Fas can mediate apoptosis. Cell. 1991;66:233-243.

    Not in our library10.1016/0092-8674(91)90614-5

  206. 206.

    Schneider P, et al. Characterization of Fas (Apo-1, CD95)-Fas Ligand Interaction. J. Biol. Chem. 1997;272:18827-18833.

    Not in our library10.1074/jbc.272.30.18827

  207. 207.

    Pan G, et al. The receptor for the cytotoxic ligand TRAIL. Science. 1997;276:111-113.

    Not in our library10.1126/science.276.5309.111

  208. 208.

    Schneider P, et al. TRAIL receptors 1 (DR4) and 2 (DR5) signal FADD-dependent apoptosis and activate NF-kB. Immunity. 1997;7:831-836.

    Not in our library10.1016/s1074-7613(00)80401-x

  209. 209.

    Chaudhary PM, et al. Death receptor 5, a new member of the TNFR family, and DR4 Induce FADD-dependent apoptosis and activate the NF-kB Pathway. Immunity. 1997;7:821-830.

    Not in our library10.1016/s1074-7613(00)80400-8

  210. 210.

    Wu GS, et al. KILLER/DR5 is a DNA damage–inducible p53–regulated death receptor gene. Nat. Genet. 1997;17:141-143.

    Not in our library10.1038/ng1097-141

  211. 211.

    Walczak H. TRAIL-R2: a novel apoptosis-mediating receptor for TRAIL. EMBO J. 1997;16:5386-5397.

    Not in our library10.1093/emboj/16.17.5386

  212. 212.

    MacFarlane M, et al. Identification and molecular cloning of two novel receptors for the cytotoxic ligand TRAIL. J. Biol. Chem. 1997;272:25417-25420.

    Not in our library10.1074/jbc.272.41.25417

  213. 213.

    Berghe TV, et al. Differential signaling to apoptotic and necrotic cell death by Fas-associated death domain protein FADD. J. Biol. Chem. 2004;279:7925-7933.

    Not in our library10.1074/jbc.m307807200

  214. 214.

    Micheau O, Tschopp J. Induction of TNF receptor I-mediated apoptosis via two sequential signaling complexes. Cell. 2003;114:181-190.

    Not in our library10.1016/s0092-8674(03)00521-x

  215. 215.

    Wang J, Chun HJ, Wong W, Spencer DM, Lenardo MJ. Caspase-10 is an initiator caspase in death receptor signaling. Proc. Natl Acad. Sci. USA. 2001;98:13884-13888.

    Not in our library10.1073/pnas.241358198

  216. 216.

    Kischkel FC, et al. Death receptor recruitment of endogenous caspase-10 and Apoptosis Initiation in the Absence of Caspase-8. J. Biol. Chem. 2001;276:46639-46646.

    Not in our library10.1074/jbc.m105102200

  217. 217.

    Medema JP. FLICE is activated by association with the CD95 death-inducing signaling complex (DISC). EMBO J. 1997;16:2794-2804.

    Not in our library10.1093/emboj/16.10.2794

  218. 218.

    Boldin MP, Goncharov TM, Goltseve YV, Wallach D. Involvement of MACH, a novel MORT1/FADD-interacting protease, in Fas/APO-1- and TNF receptor-induced cell death. Cell. 1996;85:803-815.

    Not in our library10.1016/s0092-8674(00)81265-9

  219. 219.

    Muzio M, et al. FLICE, a novel FADD-homologous ICE/CED-3–like protease, is recruited to the CD95 (Fas/APO-1) death-inducing signaling complex. Cell. 1996;85:817-827.

    Not in our library10.1016/s0092-8674(00)81266-0

  220. 220.

    Irmler M, et al. Inhibition of death receptor signals by cellular FLIP. Nature. 1997;388:190-195.

    Not in our library10.1038/40657

  221. 221.

    Scaffidi C, Schmitz I, Krammer PH, Peter ME. The role of c-FLIP in modulation of CD95-induced apoptosis. J. Biol. Chem. 1999;274:1541-1548.

    Not in our library10.1074/jbc.274.3.1541

  222. 222.

    Schneider-Brachert W, et al. Compartmentalization of TNF receptor 1 signaling: internalized TNF receptosomes as death signaling vesicles. Immunity. 2004;21:415-428.

    Not in our library10.1016/j.immuni.2004.08.017

  223. 223.

    Zheng L, et al. Competitive control of independent programs of tumor necrosis factor receptor-induced cell death by TRADD and RIP1. Mol. Cell. Biol. 2006;26:3505-3513.

    Not in our library10.1128/mcb.26.9.3505-3513.2006

  224. 224.

    O’Donnell MA, Legarda-Addison D, Skountzos P, Yeh WC, Ting AT. Ubiquitination of RIP1 regulates an NF-κB-independent cell-death switch in TNF signaling. Curr. Biol. 2007;17:418-424.

    Not in our library10.1016/j.cub.2007.01.027

  225. 225.

    Dohrman A, et al. Cellular FLIP (Long Form) regulates CD8 + T cell activation through caspase-8-Dependent NF-κB activation. J. Immunol. 2005;174:5270-5278.

    Not in our library10.4049/jimmunol.174.9.5270

  226. 226.

    Matsuda I, et al. The C-terminal domain of the long form of cellular FLICE-inhibitory protein (c-FLIP L) inhibits the interaction of the caspase 8 prodomain with the receptor-interacting protein 1 (RIP1) death domain and regulates caspase 8-dependent nuclear factor κB (NF-κB) activation. J. Biol. Chem. 2014;289:3876-3887.

    Not in our library10.1074/jbc.m113.506485

  227. 227.

    Xu D, et al. Modulating TRADD to restore cellular homeostasis and inhibit apoptosis. Nature. 2020;587:133-138.

    Not in our library10.1038/s41586-020-2757-z

  228. 228.

    Muzio M, Stockwell BR, Stennicke HR, Salvesen GS, Dixit VM. An induced proximity model for caspase-8 activation. J. Biol. Chem. 1998;273:2926-2930.

    Not in our library10.1074/jbc.273.5.2926

  229. 229.

    Seol D-W, et al. Signaling events triggered by tumor necrosis factor-related apoptosis-inducing ligand (TRAIL): caspase-8 is required for TRAIL-induced apoptosis. Cancer Res. 2001;61:61138-61143.

    Not in our library

  230. 230.

    Srinivasula SM, Ahmad M, Fernandes-Alnemri T, Litwack G, Alnemri ES. Molecular ordering of the Fas-apoptotic pathway: the Fas/APO-1 protease Mch5 is a CrmA-inhibitable protease that activates multiple Ced-3/ICE-like cysteine proteases. Proc. Natl Acad. Sci. USA. 1996;93:14486-14491.

    Not in our library10.1073/pnas.93.25.14486

  231. 231.

    Kamada S, et al. Involvement of caspase-4(-like) protease in Fas-mediated apoptotic pathway. Oncogene. 1997;15:285-290.

    Not in our library10.1038/sj.onc.1201192

  232. 232.

    Luo X, Budihardjo I, Zou H, Slaughter C, Wang X. Bid, a Bcl2 interacting protein, mediates cytochrome c release from mitochondria in response to activation of cell surface death receptors. Cell. 1998;94:481-490.

    Not in our library10.1016/s0092-8674(00)81589-5

  233. 233.

    Li H, Zhu H, Xu C, Yuan J. Cleavage of BID by caspase 8 mediates the mitochondrial damage in the fas pathway of apoptosis. Cell. 1998;94:491-501.

    Not in our library10.1016/s0092-8674(00)81590-1

  234. 234.

    Gross A, et al. Caspase cleaved BID targets mitochondria and is required for cytochrome c Release, while BCL-X L prevents this release but not tumor necrosis factor-R1/Fas death. J. Biol. Chem. 1999;274:1156-1163.

    Not in our library10.1074/jbc.274.2.1156

  235. 235.

    Eskes R, Desagher S, Antonsson B, Martinou J-C. Bid induces the oligomerization and insertion of bax into the outer mitochondrial membrane. Mol. Cell. Biol. 2000;20:929-935.

    Not in our library10.1128/mcb.20.3.929-935.2000

  236. 236.

    Wei MC, et al. tBID, a membrane-targeted death ligand, oligomerizes BAK to release cytochrome c. Genes Dev. 2000;14:2060-2071.

    Not in our library

  237. 237.

    Ravichandran KS. Find-me and eat-me signals in apoptotic cell clearance: progress and conundrums. J. Exp. Med. 2010;207:1807-1817.

    Not in our library10.1084/jem.20101157

  238. 238.

    Suzuki J, Denning DP, Imanishi E, Horvitz HR, Nagata S. Xk-related protein 8 and CED-8 promote phosphatidylserine exposure in apoptotic cells. Science. 2013;341:403-406.

    Not in our library10.1126/science.1236758

  239. 239.

    Segawa K, Suzuki J, Nagata S. Constitutive exposure of phosphatidylserine on viable cells. Proc. Natl Acad. Sci. USA. 2011;108:19246-19251.

    Not in our library10.1073/pnas.1114799108

  240. 240.

    McDonald PP, Fadok VA, Bratton D, Henson PM. Transcriptional and translational regulation of inflammatory mediator production by endogenous TGF-beta in macrophages that have ingested apoptotic cells. J. Immunol. 1999;163:6164-6172.

    Not in our library

  241. 241.

    Hoffmann PR, et al. Interaction between phosphatidylserine and the phosphatidylserine receptor inhibits immune responses in vivo. J. Immunol. 2005;174:1393-1404.

    Not in our library10.4049/jimmunol.174.3.1393

  242. 242.

    Farinacci M, Weber S, Kaufmann SHE. The recombinant tuberculosis vaccine rBCG ΔureC::hly+ induces apoptotic vesicles for improved priming of CD4+ and CD8+ T cells. Vaccine. 2012;30:7608-7614.

    Not in our library10.1016/j.vaccine.2012.10.031

  243. 243.

    Schaible UE, et al. Apoptosis facilitates antigen presentation to T lymphocytes through MHC-I and CD1 in tuberculosis. Nat. Med. 2003;9:1039-1046.

    Not in our library10.1038/nm906

  244. 244.

    Winau F, et al. Apoptotic vesicles crossprime CD8 T cells and protect against tuberculosis. Immunity. 2006;24:105-117.

    Not in our library10.1016/j.immuni.2005.12.001

  245. 245.

    Medina CB, et al. Metabolites released from apoptotic cells act as tissue messengers. Nature. 2020;580:130-135.

    Not in our library10.1038/s41586-020-2121-3

  246. 246.

    Talanian RV, et al. Granule-mediated killing: pathways for granzyme B–initiated apoptosis. J. Exp. Med. 1997;186:1323-1331.

    Not in our library10.1084/jem.186.8.1323

  247. 247.

    Sutton VR, et al. Initiation of apoptosis by granzyme B requires direct cleavage of bid, but not direct granzyme B-mediated caspase activation. J. Exp. Med. 2000;192:1403-1414.

    Not in our library10.1084/jem.192.10.1403

  248. 248.

    Sutton VR, Wowk ME, Cancilla M, Trapani JA. Caspase activation by granzyme B is indirect, and caspase autoprocessing requires the release of proapoptotic mitochondrial factors. Immunity. 2003;18:319-329.

    Not in our library10.1016/s1074-7613(03)00050-5

  249. 249.

    Heibein JA, et al. Granzyme B-mediated cytochrome C release is regulated by the Bcl-2 family members Bid and Bax. J. Exp. Med. 2000;192:1391-1402.

    Not in our library10.1084/jem.192.10.1391

  250. 250.

    Blomgran R, Zheng L, Stendahl O. Cathepsin-cleaved Bid promotes apoptosis in human neutrophils via oxidative stress-induced lysosomal membrane permeabilization. J. Leukoc. Biol. 2007;81:1213-1223.

    Not in our library10.1189/jlb.0506359

  251. 251.

    Reiners JJ, et al. Release of cytochrome c and activation of pro-caspase-9 following lysosomal photodamage involves bid cleavage. Cell Death Differ. 2002;9:934-944.

    Not in our library10.1038/sj.cdd.4401048

  252. 252.

    Chen M, et al. Bid is cleaved by calpain to an active fragment in vitro and during myocardial ischemia/reperfusion. J. Biol. Chem. 2001;276:30724-30728.

    Not in our library10.1074/jbc.m103701200

  253. 253.

    Mandic A, et al. Calpain-mediated Bid cleavage and calpain-independent Bak modulation: two separate pathways in cisplatin-induced apoptosis. Mol. Cell. Biol. 2002;22:3003-3013.

    Not in our library10.1128/mcb.22.9.3003-3013.2002

  254. 254.

    Carneiro BA, El-Deiry WS. Targeting apoptosis in cancer therapy. Nat. Rev. Clin. Oncol. 2020;17:395-417.

    Not in our library10.1038/s41571-020-0341-y

  255. 255.

    Owen-Schaub LB, et al. Wild-type human p53 and a temperature-sensitive mutant induce Fas/APO-1 expression. Mol. Cell. Biol. 1995;15:3032-3040.

    Not in our library10.1128/mcb.15.6.3032

  256. 256.

    Abedini MR, et al. Cisplatin induces p53-dependent FLICE-Like inhibitory protein ubiquitination in ovarian cancer cells. Cancer Res. 2008;68:4511-4517.

    Not in our library10.1158/0008-5472.can-08-0673

  257. 257.

    Boice A, Bouchier-Hayes L. Targeting apoptotic caspases in cancer. Biochim. Biophys. Acta Mol. Cell Res. 2020;1867:118688.

    Not in our library10.1016/j.bbamcr.2020.118688

  258. 258.

    Thome M, et al. Viral FLICE-inhibitory proteins (FLIPs) prevent apoptosis induced by death receptors. Nature. 1997;386:517-521.

    Not in our library10.1038/386517a0

  259. 259.

    Hüttmann J, Krause E, Schommartz T, Brune W. Functional comparison of molluscum contagiosum virus vFLIP MC159 with murine cytomegalovirus M36/vICA and M45/vIRA proteins. J. Virol. 2016;90:2895-2905.

    Not in our library10.1128/jvi.02729-15

  260. 260.

    Goldmacher VS, et al. A cytomegalovirus-encoded mitochondria-localized inhibitor of apoptosis structurally unrelated to Bcl-2. Proc. Natl Acad. Sci. USA. 1999;96:12536-12541.

    Not in our library10.1073/pnas.96.22.12536

  261. 261.

    Arnoult D, et al. Cytomegalovirus cell death suppressor vMIA blocks Bax- but not Bak-mediated apoptosis by binding and sequestering Bax at mitochondria. Proc. Natl Acad. Sci. USA. 2004;101:7988-7993.

    Not in our library10.1073/pnas.0401897101

  262. 262.

    Karbowski M, Norris KL, Cleland MM, Jeong S-Y, Youle RJ. Role of Bax and Bak in mitochondrial morphogenesis. Nature. 2006;443:658-662.

    Not in our library10.1038/nature05111

  263. 263.

    Norris KL, Youle RJ. Cytomegalovirus proteins vMIA and m38.5 link mitochondrial morphogenesis to Bcl-2 Family Proteins. J. Virol. 2008;82:6232-6243.

    Not in our library10.1128/jvi.02710-07

  264. 264.

    Jurak I, Schumacher U, Simic H, Voigt S, Brune W. Murine cytomegalovirus m38.5 protein inhibits Bax-mediated cell death. J. Virol. 2008;82:4812-4822.

    Not in our library10.1128/jvi.02570-07

  265. 265.

    Manzur M, Fleming P, Huang DCS, Degli-Esposti MA, Andoniou CE. Virally mediated inhibition of Bax in leukocytes promotes dissemination of murine cytomegalovirus. Cell Death Differ. 2009;16:312-320.

    Not in our library10.1038/cdd.2008.152

  266. 266.

    Arnoult D, Skaletskaya A, Estaquier J, Dufour C, Goldmacher VS. The murine cytomegalovirus cell death suppressor m38.5 binds Bax and blocks Bax-mediated mitochondrial outer membrane permeabilization. Apoptosis. 2008;13:1100-1110.

    Not in our library10.1007/s10495-008-0245-2

  267. 267.

    Çam M, Handke W, Picard-Maureau M, Brune W. Cytomegaloviruses inhibit Bak- and Bax-mediated apoptosis with two separate viral proteins. Cell Death Differ. 2010;17:655-665.

    Not in our library10.1038/cdd.2009.147

  268. 268.

    Rathinam VAK, et al. The AIM2 inflammasome is essential for host defense against cytosolic bacteria and DNA viruses. Nat. Immunol. 2010;11:395-402.

    Not in our library10.1038/ni.1864

  269. 269.

    Botto S, et al. Human cytomegalovirus immediate early 86-kDa protein blocks transcription and induces degradation of the immature interleukin-1β protein during virion-mediated activation of the AIM2 inflammasome. mBio. 2019;10:e02510-e02518.

    Not in our library10.1128/mbio.02510-18

  270. 270.

    Feng S, Ma L, Yang Y, Wu M. Truncated RIP3 (tRIP3) acts upstream of FADD to induce apoptosis in the human hepatocellular carcinoma cell line QGY-7703. Biochem. Biophys. Res. Commun. 2006;347:558-565.

    Not in our library10.1016/j.bbrc.2006.06.118

  271. 271.

    Feng S, et al. Cleavage of RIP3 inactivates its caspase-independent apoptosis pathway by removal of kinase domain. Cell. Signal. 2007;19:2056-2067.

    Not in our library10.1016/j.cellsig.2007.05.016

  272. 272.

    Newton K, et al. Cleavage of RIPK1 by caspase-8 is crucial for limiting apoptosis and necroptosis. Nature. 2019;574:428-431.

    Not in our library10.1038/s41586-019-1548-x

  273. 273.

    O’Donnell MA, et al. Caspase 8 inhibits programmed necrosis by processing CYLD. Nat. Cell Biol. 2011;13:1437-1442.

    Not in our library10.1038/ncb2362

  274. 274.

    Varfolomeev EE, et al. Targeted disruption of the mouse caspase 8 gene ablates cell death induction by the TNF receptors, Fas/Apo1, and DR3 and is lethal prenatally. Immunity. 1998;9:267-276.

    Not in our library10.1016/s1074-7613(00)80609-3

  275. 275.

    Zhang J, Cado D, Chen A, Kabra NH, Winoto A. Fas-mediated apoptosis and activation-induced T-cell proliferation are defective in mice lacking FADD/Mort1. Nature. 1998;392:296-300.

    Not in our library10.1038/32681

  276. 276.

    Yeh W. FADD: essential for embryo development and signaling from some, but not all, inducers of apoptosis. Science. 1998;279:1954-1958.

    Not in our library10.1126/science.279.5358.1954

  277. 277.

    Oberst A, et al. Catalytic activity of the caspase-8–FLIPL complex inhibits RIPK3-dependent necrosis. Nature. 2011;471:363-367.

    Not in our library10.1038/nature09852

  278. 278.

    Fritsch M, et al. Caspase-8 is the molecular switch for apoptosis, necroptosis and pyroptosis. Nature. 2019;575:683-687.

    Not in our library10.1038/s41586-019-1770-6

  279. 279.

    Gurung P, et al. FADD and Caspase-8 mediate priming and activation of the canonical and noncanonical Nlrp3 inflammasomes. J. Immunol. 2014;192:1835-1846.

    Not in our library10.4049/jimmunol.1302839

  280. 280.

    Kuriakose, T. et al. ZBP1/DAI is an innate sensor of influenza virus triggering the NLRP3 inflammasome and programmed cell death pathways. Sci. Immunol. 1, aag2045–aag2045 (2016).

    Not in our library10.1126/sciimmunol.aag2045

  281. 281.

    Vince JE, et al. Inhibitor of apoptosis proteins limit RIP3 kinase-dependent interleukin-1 activation. Immunity. 2012;36:215-227.

    Not in our library10.1016/j.immuni.2012.01.012

  282. 282.
  283. 283.

    Lawlor KE, et al. XIAP loss triggers RIPK3- and caspase-8-driven IL-1β activation and cell death as a consequence of TLR-MyD88-induced cIAP1-TRAF2 degradation. Cell Rep. 2017;20:668-682.

    Not in our library10.1016/j.celrep.2017.06.073

  284. 284.
  285. 285.

    Demarco, B. et al. Caspase-8-dependent gasdermin D cleavage promotes antimicrobial defense but confers susceptibility to TNF-induced lethality. Sci. Adv. 6, eabc3465 (2020).

    Not in our library10.1126/sciadv.abc3465

  286. 286.

    Orning P, et al. Pathogen blockade of TAK1 triggers caspase-8–dependent cleavage of gasdermin D and cell death. Science. 2018;362:1064-1069.

    Not in our library10.1126/science.aau2818

  287. 287.

    Sarhan J, et al. Caspase-8 induces cleavage of gasdermin D to elicit pyroptosis during Yersinia infection. Proc. Natl Acad. Sci. USA. 2018;115:E10888-E10897.

    Not in our library10.1073/pnas.1809548115

  288. 288.

    Vince JE, et al. The mitochondrial apoptotic effectors BAX/BAK activate caspase-3 and -7 to trigger NLRP3 inflammasome and caspase-8 driven IL-1β activation. Cell Rep. 2018;25:2339-2353.e4.

    Not in our library10.1016/j.celrep.2018.10.103

  289. 289.

    Taabazuing CY, Okondo MC, Bachovchin DA. Pyroptosis and apoptosis pathways engage in bidirectional crosstalk in monocytes and macrophages. Cell Chem. Biol. 2017;24:507-514.e4.

    Not in our library10.1016/j.chembiol.2017.03.009

  290. 290.

    Chen, K. W. et al. Extrinsic and intrinsic apoptosis activate pannexin‐1 to drive NLRP3 inflammasome assembly. EMBO J. 12 (2019).

    Not in our library10.15252/embj.2019101638

  291. 291.

    Chen KW, Demarco B, Broz P. Pannexin-1 promotes NLRP3 activation during apoptosis but is dispensable for canonical or noncanonical inflammasome activation. Eur. J. Immunol. 2020;50:170-177.

    Not in our library10.1002/eji.201948254

  292. 292.
  293. 293.

    Wang X, et al. RNA viruses promote activation of the NLRP3 inflammasome through a RIP1-RIP3-DRP1 signaling pathway. Nat. Immunol. 2014;15:1126-1133.

    Not in our library10.1038/ni.3015

  294. 294.

    Sanjo H, et al. Cutting edge: TAK1 safeguards macrophages against proinflammatory cell death. J. Immunol. 2019;203:783-788.

    Not in our library10.4049/jimmunol.1900202

  295. 295.

    Malireddi RKS, et al. TAK1 restricts spontaneous NLRP3 activation and cell death to control myeloid proliferation. J. Exp. Med. 2018;215:1023-1034.

    Not in our library10.1084/jem.20171922

  296. 296.

    Malireddi RKS, et al. Innate immune priming in the absence of TAK1 drives RIPK1 kinase activity–independent pyroptosis, apoptosis, necroptosis, and inflammatory disease. J. Exp. Med. 2020;217:e20191644.

    Not in our library10.1084/jem.20191644

  297. 297.
  298. 298.

    Zheng M, Karki R, Vogel P, Kanneganti T-D. Caspase-6 is a key regulator of innate immunity, inflammasome activation, and host defense. Cell. 2020;181:674-687.e13.

    Not in our library10.1016/j.cell.2020.03.040

  299. 299.

    Newton K, et al. Activity of caspase-8 determines plasticity between cell death pathways. Nature. 2019;575:679-682.

    Not in our library10.1038/s41586-019-1752-8

  300. 300.

    Gitlin AD, et al. Integration of innate immune signaling by caspase-8 cleavage of N4BP1. Nature. 2020;587:275-280.

    Not in our library10.1038/s41586-020-2796-5

  301. 301.
  302. 302.

    Fisch D, et al. Human GBP1 differentially targets Salmonella and Toxoplasma to license recognition of microbial ligands and caspase-mediated death. Cell Rep. 2020;32:108008.

    Not in our library10.1016/j.celrep.2020.108008

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