Skip to content
naulon

No retraction, correction or concern found when last checked on Oct 18, 2026.

Generative models of the human connectome

Richard F. Betzel, Andrea Avena-Koenigsberger, Joaquín Goñi and 11 more

NeuroImage · 2016

doi:10.1016/j.neuroimage.2015.09.041

Abstract

The human connectome represents a network map of the brain's wiring diagram and the pattern into which its connections are organized is thought to play an important role in cognitive function. The generative rules that shape the topology of the human connectome remain incompletely understood. Earlier work in model organisms has suggested that wiring rules based on geometric relationships (distance) can account for many but likely not all topological features. Here we systematically explore a family of generative models of the human connectome that yield synthetic networks designed according to different wiring rules combining geometric and a broad range of topological factors. We find that a combination of geometric constraints with a homophilic attachment mechanism can create synthetic networks that closely match many topological characteristics of individual human connectomes, including features that were not included in the optimization of the generative model itself. We use these models to investigate a lifespan dataset and show that, with age, the model parameters undergo progressive changes, suggesting a rebalancing of the generative factors underlying the connectome across the lifespan.

Full text

Its licence does not allow us to show the full text. Read it at PubMed Central:

Read at PubMed Central

References 69

  1. 1.

    Avena-Koenigsberger A., Goñi J., Betzel R.F., van den Heuvel M.P., Griffa A., Hagmann P., Thiran J.-P., Sporns O. Using Pareto optimality to explore the topology and dynamics of the human connectome. Philos. Trans. R. Soc. B-Biol. Sci. 2014;369(1653).

    Not in our library10.1098/rstb.2013.0530

  2. 2.

    Bailey A., Ventresca M., Ombuki-Berman B. Automatic generation of graph models for complex networks by genetic programming. Proceedings of the 14th Annual Conference on Genetic and Evolutionary Computation. 2012;711-718.

    Not in our library

  3. 3.

    Barabási A.-L., Albert R. Emergence of scaling in random networks. Science. 1999;286(5439):509-512.

    Not in our library10.1126/science.286.5439.509

  4. 4.

    Barthélemy M. Spatial networks. Phys. Rep. 2011;499(1):1-101.

    Not in our library

  5. 5.
  6. 6.

    Betzel R.F., Griffa A., Avena-Koenigsberger A., Goñi J., Hagmann P., Thiran J.-P., Sporns O. Multi-scale community organization of the human structural connectome and its relationship with resting-state functional connectivity. Netw. Sci. 2013;1(3):353-373.

    Not in our library

  7. 7.

    Betzel R.F., Byrge L., He Y., Goñi J., Zuo X.-N., Sporns O. Changes in structural and functional connectivity among resting-state networks across the human lifespan. NeuroImage. 2014;102:345-357.

    Not in our library10.1016/j.neuroimage.2014.07.067

  8. 8.

    Blondel V.D., Guillaume J.-L., Lambiotte R., Lefebvre E. Fast unfolding of communities in large networks. J. Stat. Mech: Theory Exp. 2008;2008(10):P10008.

    Not in our library

  9. 9.

    Bullmore E., Sporns O. Complex brain networks: graph theoretical analysis of structural and functional systems. Nat. Rev. Neurosci. 2009;10(3):186-198.

    Not in our library10.1038/nrn2575

  10. 10.

    Bullmore E., Sporns O. The economy of brain network organization. Nat. Rev. Neurosci. 2012;13(5):336-349.

    Not in our library10.1038/nrn3214

  11. 11.

    Cammoun L., Gigandet X., Meskaldji D., Thiran J.P., Sporns O., Do K.Q., Maeder P., Meuli R., Hagmann P. Mapping the human connectome at multiple scales with diffusion spectrum MRI. J. Neurosci. Methods. 2012;203(2):386-397.

    Not in our library10.1016/j.jneumeth.2011.09.031

  12. 12.

    Cao M., Wang J.-H., Dai Z.-J., Cao X.-Y., Jiang L.-L., Fan F.-M., Song X.-W., Xia M.-R., Shu N., Dong Q. Topological organization of the human brain functional connectome across the lifespan. Dev. Cogn. Neurosci. 2014;7:76-93.

    Not in our library10.1016/j.dcn.2013.11.004

  13. 13.

    Cherniak C., Mokhtarzada Z., Rodriguez-Esteban R., Changizi K. Global optimization of cerebral cortex layout. Proc. Natl. Acad. Sci. U. S. A. 2004;101(4):1081-1086.

    Not in our library10.1073/pnas.0305212101

  14. 14.

    Costa L.d.F., Kaiser M., Hilgetag C.C. Predicting the connectivity of primate cortical networks from topological and spatial node properties. BMC Syst. Biol. 2007;1(1):16.

    Not in our library10.1186/1752-0509-1-16

  15. 15.

    Costa L.d.F., Rodrigues F.A., Travieso G., Villas Boas P.R. Characterization of complex networks: a survey of measurements. Adv. Phys. 2007;56(1):167-242.

    Not in our library

  16. 16.
  17. 17.

    Dall J., Christensen M. Random geometric graphs. Phys. Rev. E. 2002;66(1):016121.

    Not in our library10.1103/physreve.66.016121

  18. 18.

    de Reus M.A., van den Heuvel M.P. Simulated rich club lesioning in brain networks: a scaffold for communication and integration? Front. Hum. Neurosci. 2014;8:647.

    Not in our library10.3389/fnhum.2014.00647

  19. 19.

    Destrieux C., Fischl B., Dale A., Halgren E. Automatic parcellation of human cortical gyri and sulci using standard anatomical nomenclature. NeuroImage. 2010;53(1):1-15.

    Not in our library10.1016/j.neuroimage.2010.06.010

  20. 20.

    Ercsey-Ravasz M., Markov N.T., Lamy C., Van Essen D.C., Knoblauch K., Toroczkai Z., Kennedy H. A predictive network model of cerebral cortical connectivity based on a distance rule. Neuron. 2013;80(1):184-197.

    Not in our library10.1016/j.neuron.2013.07.036

  21. 21.

    Fortunato S. Community detection in graphs. Phys. Rep. 2010;486(3):75-174.

    Not in our library

  22. 22.

    Friedman E.J., Landsberg A.S., Owen J., Hsieh W., Kam L., Mukherjee P. Edge correlations in spatial networks. J. Complex Netw. 2015;cnv015.

    Not in our library

  23. 23.

    Glasser M.F., Sotiropoulos S.N., Wilson J.A., Coalson T.S., Fischl B., Andersson J.L., Xu J., Jbabdi S., Webster M., Polimeni J.R. The minimal preprocessing pipelines for the human connectome project. NeuroImage. 2013;80:105-124.

    Not in our library10.1016/j.neuroimage.2013.04.127

  24. 24.
  25. 25.

    Goñi J., van den Heuvel M.P., Avena-Koenigsberger A., de Mendizabal N.V., Betzel R.F., Griffa A., Hagmann P., Corominas-Murtra B., Thiran J.-P., Sporns O. Resting-brain functional connectivity predicted by analytic measures of network communication. Proc. Natl. Acad. Sci. U. S. A. 2014;111(2):833-838.

    Not in our library10.1073/pnas.1315529111

  26. 26.
  27. 27.

    Henderson J., Robinson P. Geometric effects on complex network structure in the cortex. Phys. Rev. Lett. 2011;107(1):018102.

    Not in our library10.1103/physrevlett.107.018102

  28. 28.

    Henderson J.A., Robinson P.A. Using geometry to uncover relationships between isotropy, homogeneity, and modularity in cortical connectivity. Brain Connect. 2013;3(4):423-437.

    Not in our library10.1089/brain.2013.0151

  29. 29.

    Henderson J.A., Robinson P.A. Relations between the geometry of cortical gyrification and white-matter network architecture. Brain Connect. 2014;4(2):112-130.

    Not in our library10.1089/brain.2013.0183

  30. 30.

    Hermundstad A.M., Bassett D.S., Brown K.S., Aminoff E.M., Clewett D., Freeman S., Frithsen A., Johnson A., Tipper C.M., Miller M.B. Structural foundations of resting-state and task-based functional connectivity in the human brain. Proc. Natl. Acad. Sci. U. S. A. 2013;110(15):6169-6174.

    Not in our library10.1073/pnas.1219562110

  31. 31.

    Kaiser M., Hilgetag C.C. Modelling the development of cortical systems networks. Neurocomputing. 2004;58:297-302.

    Not in our library

  32. 32.

    Kaiser M., Hilgetag C.C. Spatial growth of real-world networks. Phys. Rev. E. 2004;69(3):036103.

    Not in our library10.1103/physreve.69.036103

  33. 33.
  34. 34.

    Kaiser M., Hilgetag C.C. Development of multi-cluster cortical networks by time windows for spatial growth. Neurocomputing. 2007;70(10–12):1829-1832.

    Not in our library

  35. 35.

    Kaiser M., Hilgetag C.C., Van Ooyen A. A simple rule for axon outgrowth and synaptic competition generates realistic connection lengths and filling fractions. Cereb. Cortex. 2009;19(12):3001-3010.

    Not in our library10.1093/cercor/bhp071

  36. 36.

    Klimm F., Bassett D.S., Carlson J.M., Mucha P.J. Resolving structural variability in network models and the brain. PLoS Comput. Biol. 2014;10(3):e1003491.

    Not in our library10.1371/journal.pcbi.1003491

  37. 37.

    Kumar R., Raghavan P., Rajagopalan S., Sivakumar D., Tomkins A., Upfal E. Stochastic models for the web graph. Proceedings of the 41st Annual Symposium on the Foundations of Computer Science. 2000;57-65.

    Not in our library

  38. 38.

    Langen M., Agi E., Altschuler D.J., Wu L.F., Altschuler S.J., Hiesinger P.R. The developmental rules of neural superposition in drosophila. Cell. 2015;162(1):120-133.

    Not in our library10.1016/j.cell.2015.05.055

  39. 39.

    Laughlin S.B., Sejnowski T.J. Communication in neuronal networks. Science. 2003;301(5641):1870-1874.

    Not in our library10.1126/science.1089662

  40. 40.

    Lim S., Kaiser M. Developmental time windows for axon growth influence neuronal network topology. Biol. Cybern. 2015;109(2):275-286.

    Not in our library10.1007/s00422-014-0641-3

All 69 references

Cited by papers we hold 9

Reads

Read by people on this page

None yet.

Checked or read by AI through naulon

None yet.

A person counts once a day per paper. We keep no cookie and no address: a reader is a hash that changes every day. Any month under five reads shows no number.

Are you an author?

Is this your paper?

Claim it to add your note and be paid when agents cite it. Free.