Skip to content
naulon

No retraction, correction or concern found when last checked on Nov 3, 2026.

Epigenetic regulation of adaptive responses of forest tree species to the environment

Katharina Bräutigam, Kelly J. Vining, Clément Lafon‐Placette and 14 more

Ecology and Evolution · 2013

doi:10.1002/ece3.461

Abstract

Epigenetic variation is likely to contribute to the phenotypic plasticity and adaptative capacity of plant species, and may be especially important for long‐lived organisms with complex life cycles, including forest trees. Diverse environmental stresses and hybridization/polyploidization events can create reversible heritable epigenetic marks that can be transmitted to subsequent generations as a form of molecular “memory”. Epigenetic changes might also contribute to the ability of plants to colonize or persist in variable environments. In this review, we provide an overview of recent data on epigenetic mechanisms involved in developmental processes and responses to environmental cues in plant, with a focus on forest tree species. We consider the possible role of forest tree epigenetics as a new source of adaptive traits in plant breeding, biotechnology, and ecosystem conservation under rapid climate change.

Shown for reading. Its publisher allows quoting it, not republishing it.

References 115

  1. 1.

    Akimoto K, Katakami H, Kim HJ, Ogawa E, Sano CM, Wada Y, et al. Epigenetic inheritance in rice plants. Ann. Bot. 2007;100:205-217.

    Not in our library10.1093/aob/mcm110

  2. 2.

    Bastow R, Mylne JS, Lister C, Lippman Z, Martienssen RA, Dean C. Vernalization requires epigenetic silencing of FLC by histone methylation. Nature. 2004;427:164-167.

    Not in our library10.1038/nature02269

  3. 3.

    Baurens FC, Nicolleau J, Legavre T, Verdeil JL, Monteuuis O. Genomic DNA methylation of juvenile and mature Acacia mangium micropropagated in vitro with reference to leaf morphology as a phase change marker. Tree Physiol. 2004;24:401-407.

    Not in our library10.1093/treephys/24.4.401

  4. 4.

    Besnard G, Acheré V, Jeandroz S, Johnsen Ø, Faivre Rampant P, Baumann R, et al. Does maternal environmental condition during reproductive development induce genotypic selection in Piceaabies. Ann. For. Sci. 2008;65:109.

    Not in our library

  5. 5.

    Birchler JA, Yao H, Chudalayandi S, Vaiman D, Vieti RA. Heterosis. Plant Cell. 2010;22:2105-2112.

    Not in our library10.1105/tpc.110.076133

  6. 6.

    Bogeat-Triboulot MB, Brosché M, Renaut J, Jouve L, Fayyaz D, Le Thiec P, et al. Gradual soil water depletion results in reversible changes of gene expression, protein profiles, ecophysiology, and growth performance in Populus euphratica, a poplar growing in arid regions. Plant Physiol. 2007;143:876-892.

    Not in our library10.1104/pp.106.088708

  7. 7.

    Bonasio R, Tu S, Reinberg D. Molecular signals of epigenetic states. Science. 2010;330:612-616.

    Not in our library10.1126/science.1191078

  8. 8.

    Bond DM, Finnegan EJ. Passing the message on: inheritance of epigenetic traits. Trends Plant Sci. 2007;12:211-216.

    Not in our library10.1016/j.tplants.2007.03.010

  9. 9.

    Bonhomme L, Monclus R, Vincent D, Carpin S, Lomenech AM, Plomion C, et al. Leaf proteome analysis of eight Populus x euramericana genotypes: genetic variation in drought response and in water-use efficiency involves photosynthesis-related proteins. Proteomics. 2009;9:4121-4142.

    Not in our library10.1002/pmic.200900047

  10. 10.

    Bossdorf O, Richards CL, Pigliucci M. Epigenetics for ecologists. Ecol. Lett. 2008;11:106-115.

    Not in our library10.1111/j.1461-0248.2007.01130.x

  11. 11.

    Bourc'his D, Voinnet O. A Small-RNA perspective on gametogenesis, fertilization, and early zygotic development. Science. 2010;330:617-622.

    Not in our library10.1126/science.1194776

  12. 12.

    Boyko A, Kovalchuk I. Epigenetic control of plant stress response. Environ. Mol. Mutagen. 2008;49:61-72.

    Not in our library10.1002/em.20347

  13. 13.

    Cervera MT, Ruiz-Garcia L, Martínez-Zapater JM. Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers. Mol. Genet. Genomics. 2002;268:543-552.

    Not in our library10.1007/s00438-002-0772-4

  14. 14.
  15. 15.

    Chinnusamy V, Zhu JK. Epigenetic regulation of stress responses in plants. Curr. Opin. Plant Biol. 2009;12:133-139.

    Not in our library10.1016/j.pbi.2008.12.006

  16. 16.

    Chouard P. Vernalization and its relations to dormancy. Annu. Rev. Plant Physiol. 1960;11:191-238.

    Not in our library

  17. 17.

    Cokus SJ, Feng S, Zhang X, Chen Z, Merriman B, Haudenschild CD, et al. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature. 2008;452:215-219.

    Not in our library10.1038/nature06745

  18. 18.

    Cubas P, Vincent C, Coen E. An epigenetic mutation responsible for natural variation in floral symmetry. Nature. 1999;401:157-161.

    Not in our library10.1038/43657

  19. 19.

    De Block M, Van Lijsebettens M. Energy efficiency and energy homeostasis as genetic and epigenetic components of plant performance and crop productivity. Curr. Opin. Plant Biol. 2011;14:275-282.

    Not in our library10.1016/j.pbi.2011.02.007

  20. 20.

    Demidov D, Hesse S, Tewes A, Rutten T, Fuchs J, Ashtiyani RK, et al. Aurora1 phosphorylation activity on histone H3 and its cross-talk with other post-translational histone modifications in Arabidopsis. Plant J. 2009;59:221-230.

    Not in our library10.1111/j.1365-313x.2009.03861.x

  21. 21.

    Dormling I, Johnsen Ø. Effects of the parental environment on full-sib families of Pinus sylvestris. Can. J. For. Res. 1992;22:88-100.

    Not in our library

  22. 22.

    Feil R, Fraga MF. Epigenetics and the environment: emerging patterns and implications. Nat. Rev. Genet. 2011;13:97-109.

    Not in our library10.1038/nrg3142

  23. 23.

    Flusberg BA, Webster DR, Lee JH, Travers KJ, Olivares EC, Tyson AC, et al. Direct detection of DNA methylation during single-molecule, real-time sequencing. Nat. Methods. 2010;7:461-465.

    Not in our library10.1038/nmeth.1459

  24. 24.

    Fraga MF, Canal MJ, Rodriguez R. Phase-change related epigenetic and physiological changes in Pinus radiata D. Don. Planta. 2002a;215:672-678.

    Not in our library10.1007/s00425-002-0795-4

  25. 25.

    Fraga MF, Rodriguez R, Canal MJ. Genomic DNA methylation-demethylation during aging and reinvigoration of Pinus radiata. Tree Physiol. 2002b;22:813-816.

    Not in our library10.1093/treephys/22.11.813

  26. 26.

    Gourcilleau D, Bogeat-Triboulot MB, Lafon-Placette D, Le Thiec C, Delaunay A, El-Soud WA, et al. DNA methylation and histone acetylation: genotypic variations in hybrid poplars, impact of water deficit and relationships with productivity. Ann. For. Sci. 2010;67:208.

    Not in our library

  27. 27.

    Grattapaglia D, Plomion C, Kirst M, Sederoff RR. Genomics of growth traits in forest trees. Curr. Opin. Plant Biol. 2009;12:148-156.

    Not in our library10.1016/j.pbi.2008.12.008

  28. 28.

    Greenwood MS, Hutchison KW, Hom J, Birdsey R, O'Brian K. Genetic after effects of increased temperature in Larix. Proceedings of the 1995 Meeting of the Northern Global Change Program. 1996;56-62.

    Not in our library

  29. 29.

    Greenwood MS, Hopper CA, Hutchison KW. Maturation in larch: I. Effect of age on shoot growth, foliar characteristics, and DNA methylation. Plant Physiol. 1989;90:406-412.

    Not in our library10.1104/pp.90.2.406

  30. 30.

    Groszmann M, Greaves IK, Albert N, Fujimoto R, Helliwell CA, Dennis ES, et al. Epigenetics in plants-vernalisation and hybrid vigour. Biochim. Biophys. Acta. 2011a;1809:427-437.

    Not in our library10.1016/j.bbagrm.2011.03.006

  31. 31.

    Groszmann M, Greaves IK, Albertyn ZI, Scofield GN, Peacock WJ, Dennis ES. Changes in 24-nt siRNA levels in Arabidopsis hybrids suggest an epigenetic contribution to hybrid vigor. Proc. Natl Acad. Sci. USA. 2011b;108:2617-2622.

    Not in our library10.1073/pnas.1019217108

  32. 32.

    Gutierrez-Marcos JF, Costa LM, Dal Prà M, Scholten S, Kranz E, Perez P, et al. Epigenetic asymmetry of imprinted genes in plant gametes. Nat. Genet. 2006;38:876-878.

    Not in our library10.1038/ng1828

  33. 33.

    Ha M, Lu J, Tian L, Ramachandran V, Kasschau KD, Capman EJ, et al. Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids. Proc. Natl Acad. Sci. USA. 2009;106:17835-17840.

    Not in our library10.1073/pnas.0907003106

  34. 34.

    Hamanishi ET, Campbell MM. Genome-wide responses to drought in forest trees. Forestry. 2011;84:273-283.

    Not in our library

  35. 35.

    Hashida SN, Uchiyama T, Martin C, Kishima Y, Sano Y, Mikami T. The temperature-dependent change in methylation of the Antirrhinum transposon Tam3 is controlled by the activity of its transposase. Plant Cell. 2006;18:104-118.

    Not in our library10.1105/tpc.105.037655

  36. 36.

    Haun WJ, Laoueille-Duprat S, O'Connell MJ, Spillane C, Grossniklaus U, Phillips AR, et al. Genomic imprinting, methylation and molecular evolution of maize Enhancer of zeste (Mez) homologs. Plant J. 2007;49:325-337.

    Not in our library10.1111/j.1365-313x.2006.02965.x

  37. 37.

    Hauser M, Aufsatz W, Jonak C, Luschnig C. Transgenerational epigenetic inheritance in plants. Biochim. Biophys. Acta. 2011;1809:459-468.

    Not in our library10.1016/j.bbagrm.2011.03.007

  38. 38.

    He G, Zhu X, Elling AA, Chen L, Wang X, Guo L, et al. Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids. Plant Cell. 2010;22:17-33.

    Not in our library10.1105/tpc.109.072041

  39. 39.

    Heo JB, Sung S. Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA. Science. 2011;331:76-79.

    Not in our library10.1126/science.1197349

  40. 40.

    Herrera CM. The adaptedness of the floral phenotype in a relict endemic, hawkmoth-pollinated violet. 2. Patterns of variation among disjunct populations. Biol. J. Linn. Soc. 1990;40:275-291.

    Not in our library

All 115 references

Cited by papers we hold 4

Reads

Read by people on this page

None yet.

Checked or read by AI through naulon

None yet.

A person counts once a day per paper. We keep no cookie and no address: a reader is a hash that changes every day. Any month under five reads shows no number.

Are you an author?

Is this your paper?

Claim it to add your note and be paid when agents cite it. Free.