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Ion Mobility Mass Spectrometry (IM-MS) for Structural Biology: Insights Gained by Measuring Mass, Charge, and Collision Cross Section
Emilia Christofi, Perdita Barran · Chemical Reviews · 2023 · Review
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Global detection of human variants and isoforms by deep proteome sequencing
Pavel Sinitcyn, Alicia L. Richards, Robert J. Weatheritt et al. · Nature Biotechnology · 2023
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Rapid protein assignments and structures from raw NMR spectra with the deep learning technique ARTINA
Piotr Klukowski, Roland Riek, Peter Güntert · Nature Communications · 2022
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dia-PASEF data analysis using FragPipe and DIA-NN for deep proteomics of low sample amounts
Vadim Demichev, Lukasz Szyrwiel, Fengchao Yu et al. · Nature Communications · 2022
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The ProteomeXchange consortium at 10 years: 2023 update
Eric W Deutsch, Nuno Bandeira, Yasset Perez-Riverol et al. · Nucleic Acids Research · 2022
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Deep learning boosts sensitivity of mass spectrometry-based immunopeptidomics
Mathias Wilhelm, Daniel P. Zolg, Michael Graber et al. · Nature Communications · 2021
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Single-cell proteomic and transcriptomic analysis of macrophage heterogeneity using SCoPE2
Harrison Specht, Edward Emmott, Aleksandra A. Petelski et al. · Genome Biology · 2021
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The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences
Yasset Perez-Riverol, Jingwen Bai, Chakradhar Bandla et al. · Nucleic Acids Research · 2021
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Deep learning the collisional cross sections of the peptide universe from a million experimental values
Florian Meier, Niklas D. Köhler, Andreas-David Brunner et al. · Nature Communications · 2021
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PTM-Shepherd: Analysis and Summarization of Post-Translational and Chemical Modifications From Open Search Results
Daniel J. Geiszler, Andy T. Kong, Dmitry M. Avtonomov et al. · Molecular & Cellular Proteomics · 2021
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Higher-order structural characterisation of native proteins and complexes by top-down mass spectrometry
Mowei Zhou, Carter Lantz, Kyle A. Brown et al. · Chemical Science · 2020 · Review
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Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes
Chloe Chong, Markus Müller, HuiSong Pak et al. · Nature Communications · 2020
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MaxQuant Software for Ion Mobility Enhanced Shotgun Proteomics
Nikita Prianichnikov, Heiner Koch, Scarlet Koch et al. · Molecular & Cellular Proteomics · 2020
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