Essential guidelines for computational method benchmarking
Lukas M. Weber, Wouter Saelens, Robrecht Cannoodt et al. · Genome Biology · 2019 · Review
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Information Systems and Management
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The EMBL-EBI search and sequence analysis tools APIs in 2019
Fábio Madeira, Young mi Park, Joon Lee et al. · Nucleic Acids Research · 2019
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BioModels—15 years of sharing computational models in life science
Rahuman S Malik-Sheriff, Mihai Glont, Tung V N Nguyen et al. · Nucleic Acids Research · 2019
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Reproducible research practices, transparency, and open access data in the biomedical literature, 2015–2017
Joshua D. Wallach, Kevin W. Boyack, John P. A. Ioannidis · PLOS Biology · 2018
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Reproducibility vs. Replicability: A Brief History of a Confused Terminology
Hans E. Plesser · Frontiers in Neuroinformatics · 2018
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FirebrowseR: an R client to the Broad Institute’s Firehose Pipeline
Mario Deng, Johannes Brägelmann, Ivan Kryukov et al. · Database · 2017
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systemPipeR: NGS workflow and report generation environment
Tyler W. H. Backman, Thomas Girke · BMC Bioinformatics · 2016
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Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking
Paul J. McMurdie, Susan Holmes · Bioinformatics · 2014
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How to Make More Published Research True
John P. A. Ioannidis · PLoS Medicine · 2014
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Analysis Tool Web Services from the EMBL-EBI
Hamish McWilliam, Weizhong Li, Mahmut Uludag et al. · Nucleic Acids Research · 2013
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CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing
Samuel V Angiuoli, Malcolm Matalka, Aaron Gussman et al. · BMC Bioinformatics · 2011
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Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
Jeremy Goecks, Anton Nekrutenko, James Taylor et al. · Genome Biology · 2010
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