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Water and molecular chaperones act as weak links of protein folding networks: energy landscape and punctuated equilibrium changes point towards a game theory of proteins
Istvan A. Kovacs, Mate S. Szalay, Peter Csermely · FEBS Letters (2005) 579: 2254-2260 · 2005
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A double-deletion method to quantifying incremental binding energies in proteins from experiment. Example of a destabilizing hydrogen bonding pair
Luis A. Campos, Santiago Cuesta-Lopez, Jon Lopez-Llano et al. · 2004
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Using nonlocal electrostatics for solvation free energy computations: ions and small molecules
A. Hildebrandt, O. Kohlbacher, R. Blossey et al. · 2003
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In-silico folding of a three helix protein and characterization of its free-energy landscape in an all-atom forcefield
T. Herges, W. Wenzel · 2003
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Searching low-energy conformations of two elastin sequences
H. Arkin · Eur. Phys. J. B 37, 223-228 (2004) · 2004
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Realistic protein-protein association rates from a simple diffusional model neglecting long-range interactions, free energy barriers, and landscape ruggedness
Maximilian Schlosshauer, David Baker · Protein Science (13), 1660-1669 (2004) · 2004
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Probing vibrational energy relaxation in proteins using normal modes
Hiroshi Fujisaki, Lintao Bu, John E. Straub · 2004
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Vibrational energy relaxation (VER) of a CD stretching mode in cytochrome c
Hiroshi Fujisaki, Lintao Bu, John E. Straub · 2004
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Free Energy Transduction in a Chemical Motor Model
Josh E. Baker · 2003
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Influence of subunit structure on the oligomerization state of light harvesting complexes: a free energy calculation study
Lorant Janosi, Harindar Keer, Ioan Kosztin et al. · Chemical Physics (2005) · 2005
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The protein folding network
Francesco Rao, Amedeo Caflisch · J. Mol. Biol. 342, 299-306, (2004) · 2004
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Geometrical model for the native-state folds of proteins
Trinh X. Hoang, Antonio Trovato, Flavio Seno et al. · Biophys. Chem. 115 (2005), 289-294 · 2005
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Kinetics of protein-DNA interaction: facilitated target location in sequence-dependent potential
Michael Slutsky, Leonid A. Mirny · Biophys. J. 87:4021-4035 (2004) · 2004
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Modelling the mechanism of cell inactivation by light ions at different energy values
Pavel Kundrat, Hana Hromcikova, Milos Lokajicek · 2004
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Thermodynamics of RNA/DNA hybridization in high density oligonucleotide microarrays
Enrico Carlon, Thomas Heim · Physica A 362, 433 (2006) · 2006
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The Go model revisited: Native structure and the geometric coupling between local and long-range contacts
P. F. N. Faisca, M. M. Telo da Gama, A. Nunes · Proteins: Structure, Function and Bioinformatics 60, 712-722 (2005) · 2005
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Conditions for the Formation of Axisymmetric Biconcave Vesicles
Thomas Kwok-keung Au, Tom Yau-heng Wan · 1999
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A Model of Convergent Extension in Animal Morphogenesis
Mark Zajac Gerald L. Jones, James A. Glazier · 2000
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Can contact potentials reliably predict stability of proteins?
Jainab Kahtun, Sagar D. Khare, Nikolay V. Dokholyan · J. Mol. Biol. 336: 1223-1238 (2004) · 2004
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Active Brownian Particle and Random Walk Theories of the Motions of Zooplankton: Application to Experiments with Swarms of Daphnia
Udo Erdmann, Werner Ebeling, Lutz Schimansky-Geier et al. · 2004
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