Are we close to defining a metabolomic signature of human obesity? A systematic review of metabolomics studies
Oscar Daniel Rangel-Huerta, Belén Pastor-Villaescusa, Angel Gil · Metabolomics · 2019 · Systematic review
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Drugging KRAS: current perspectives and state-of-art review
Kaushal Parikh, Giuseppe Banna, Stephen V. Liu et al. · Journal of Hematology & Oncology · 2022 · Review
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The Bacterium Akkermansia muciniphila: A Sentinel for Gut Permeability and Its Relevance to HIV-Related Inflammation
Jing Ouyang, John Lin, Stéphane Isnard et al. · Frontiers in Immunology · 2020 · Review
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Embeddings from protein language models predict conservation and variant effects
Céline Marquet, Michael Heinzinger, Tobias Olenyi et al. · Human Genetics · 2021
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Automatic annotation of eukaryotic genes, pseudogenes and promoters
Victor Solovyev, Peter Kosarev, Igor Seledsov et al. · Genome Biology · 2006
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BioTransformer: a comprehensive computational tool for small molecule metabolism prediction and metabolite identification
Yannick Djoumbou-Feunang, Jarlei Fiamoncini, Alberto Gil-de-la-Fuente et al. · Journal of Cheminformatics · 2019
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A deep learning approach to programmable RNA switches
Nicolaas M. Angenent-Mari, Alexander S. Garruss, Luis R. Soenksen et al. · Nature Communications · 2020
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Machine Learning and Its Applications to Biology
Adi L Tarca, Vincent J Carey, Xue-wen Chen et al. · PLoS Computational Biology · 2007 · Review
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DeepST: identifying spatial domains in spatial transcriptomics by deep learning
Chang Xu, Xiyun Jin, Songren Wei et al. · Nucleic Acids Research · 2022
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Enhancing the Prioritization of Disease-Causing Genes through Tissue Specific Protein Interaction Networks
Oded Magger, Yedael Y. Waldman, Eytan Ruppin et al. · PLoS Computational Biology · 2012
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The timeline of epigenetic drug discovery: from reality to dreams
A. Ganesan, Paola B. Arimondo, Marianne G. Rots et al. · Clinical Epigenetics · 2019 · Review
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Multi-omics single-cell data integration and regulatory inference with graph-linked embedding
Zhi-Jie Cao, Ge Gao · Nature Biotechnology · 2022
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An in silico deep learning approach to multi-epitope vaccine design: a SARS-CoV-2 case study
Zikun Yang, Paul Bogdan, Shahin Nazarian · Scientific Reports · 2021
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