Machine Learning and Its Applications to Biology
Adi L Tarca, Vincent J Carey, Xue-wen Chen et al. · PLoS Computational Biology · 2007 · Review
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A dual-mode surface display system for the maturation and production of monoclonal antibodies in glyco-engineered Pichia pastoris.
Hussam H Shaheen, Bianka Prinz, Ming-Tang Chen et al. · PLoS ONE · 2013
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Dissecting the Machinery That Introduces Disulfide Bonds in <named-content content-type="genus-species">Pseudomonas aeruginosa</named-content>
Isabelle S. Arts, Geneviève Ball, Pauline Leverrier et al. · mBio · 2013
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An expectation-maximization algorithm enables accurate ecological modeling using longitudinal microbiome sequencing data
Chenhao Li, Kern Rei Chng, Junmei Samantha Kwah et al. · Microbiome · 2019
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CamurWeb: a classification software and a large knowledge base for gene expression data of cancer
Emanuel Weitschek, Silvia Di Lauro, Eleonora Cappelli et al. · BMC Bioinformatics · 2018
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Correction: Module Discovery by Exhaustive Search for Densely Connected, Co-Expressed Regions in Biomolecular Interaction Networks.
Recep Colak, Flavia Moser, Jeffrey Shih-Chieh Chu et al. · PLoS ONE · 2010
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S-conLSH: alignment-free gapped mapping of noisy long reads
Angana Chakraborty, Burkhard Morgenstern, Sanghamitra Bandyopadhyay · BMC Bioinformatics · 2021
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MeDEStrand: an improved method to infer genome-wide absolute methylation levels from DNA enrichment data
Jingting Xu, Shimeng Liu, Ping Yin et al. · BMC Bioinformatics · 2018
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Classification of Tumor Samples from Expression Data Using Decision Trunks
Benjamin Ulfenborg, Karin Klinga-Levan, Björn Olsson · Cancer Informatics · 2013
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DeepST: identifying spatial domains in spatial transcriptomics by deep learning
Chang Xu, Xiyun Jin, Songren Wei et al. · Nucleic Acids Research · 2022
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NeuroTIS+: An Improved Method for Translation Initiation Site Prediction in Full-Length mRNA Sequence via Primary Structural Information
Wenqiu Xiao, Chao Wei · Applied Sciences · 2025
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A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling
Ari Ugarte, Riccardo Vicedomini, Juliana Bernardes et al. · Microbiome · 2018
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Editorial: New Approaches in Chordate and Vertebrate Evolution and Development
Juan Pascual-Anaya, Juan Pascual-Anaya, Salvatore D’Aniello et al. · Frontiers in Cell and Developmental Biology · 2022
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RNABindRPlus: a predictor that combines machine learning and sequence homology-based methods to improve the reliability of predicted RNA-binding residues in proteins.
Rasna R Walia, Li C Xue, Katherine Wilkins et al. · PLoS ONE · 2014
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Enhancing the Prioritization of Disease-Causing Genes through Tissue Specific Protein Interaction Networks
Oded Magger, Yedael Y. Waldman, Eytan Ruppin et al. · PLoS Computational Biology · 2012
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Trans-Allelic Model for Prediction of Peptide:MHC-II Interactions
Abdoelnaser M. Degoot, Abdoelnaser M. Degoot, Abdoelnaser M. Degoot et al. · Frontiers in Immunology · 2018
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The timeline of epigenetic drug discovery: from reality to dreams
A. Ganesan, Paola B. Arimondo, Marianne G. Rots et al. · Clinical Epigenetics · 2019 · Review
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RNA-CODE: a noncoding RNA classification tool for short reads in NGS data lacking reference genomes.
Cheng Yuan, Yanni Sun · PLoS ONE · 2013
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Identifying SNAREs by Incorporating Deep Learning Architecture and Amino Acid Embedding Representation
Nguyen Quoc Khanh Le, Tuan-Tu Huynh, Tuan-Tu Huynh · Frontiers in Physiology · 2019
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Multi-omics single-cell data integration and regulatory inference with graph-linked embedding
Zhi-Jie Cao, Ge Gao · Nature Biotechnology · 2022
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