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Insights into mammalian biology from the wild house mouse Mus musculus
Megan Phifer-Rixey, Michael W Nachman
eLife · 2015 · CC BY
Abstract
The house mouse, Mus musculus, was established in the early 1900s as one of the first genetic model organisms owing to its short generation time, comparatively large litters, ease of husbandry, and visible phenotypic variants. For these reasons and because they are mammals, house mice are well suited to serve as models for human phenotypes and disease. House mice in the wild consist of at least three distinct subspecies and harbor extensive genetic and phenotypic variation both within and between these subspecies. Wild mice have been used to study a wide range of biological processes, including immunity, cancer, male sterility, adaptive evolution, and non-Mendelian inheritance. Despite the extensive variation that exists among wild mice, classical laboratory strains are derived from a limited set of founders and thus contain only a small subset of this variation. Continued efforts to study wild house mice and to create new inbred strains from wild populations have the potential to strengthen house mice as a model system.
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From PubMed Central, U.S. National Library of Medicine, as current on Oct 22, 2026. Paragraph numbers are ours, so an answer can point at one.
Introduction
Today, house mice (Mus musculus) are widely known as an excellent mammalian model for studying a wide variety of traits and diseases, including those involved in metabolism, development, neurological disorders, immunity, and others. At the beginning of the 20th century, however, Mendel's work had only recently been rediscovered and the race was on to develop genetic model systems. In a series of papers from 1902–1905, Lucien Cuénot used mice to demonstrate Mendel's laws for the first time in mammals. Around the same time, William E Castle, a pioneer of the use of Drosophila to study genetics, also began investigating the inheritance of coat color in mice. The Castle lab and others launched research programs focused on mouse genetics, and soon realised the need to create inbred strains (see Box 1 for a glossary of specialist terms used in this article) of mice (e.g.,;;;, ). By 1909, the first inbred strain, DBA, was created and the era of modern mouse genetics had begun. Since then, hundreds of inbred strains have been developed.
DOI: http://dx.doi.org/10.7554/eLife.05959.002
The success of the house mouse as a genetic model organism is largely due to its unique natural history. In this article, we briefly introduce the evolutionary and natural history of house mice, as well as the origins of laboratory strains (Box 2). We highlight several examples in which wild house mice have provided important insights into mammalian biology and suggest future avenues for research.
DOI: http://dx.doi.org/10.7554/eLife.05959.003
Phylogenetic history
House mice comprise three main subspecies of M. musculus with different global distributions: Mus musculus castaneus, Mus musculus domesticus and Mus musculus musculus (Figure 1). Their closest relatives are not human commensals (see ‘Glossary’) and include the mound building mouse, Mus spicilegus, and the Algerian mouse, Mus spretus. The ancestral range for M. musculus was likely in present-day India. Genetic and genomic data indicate that the three subspecies of M. musculus started to diverge ∼350–500 thousand years ago (KYA) and that the split among the three subspecies occurred within a short period of time. Nonetheless, the available evidence suggests that M. m. castaneus and M. m. musculus are more closely related to each other than either is to M. m. domesticus. There is evidence of hybridization among the subspecies in zones of secondary contact. An additional subspecies, Mus musculus molossinus, is found in Japan and is derived from hybridization between M. m. castaneus and M. m. musculus. Classical inbred strains of house mice are genetic mosaics of the three main subspecies, although they are primarily M. m. domesticus in origin. Interestingly, contributions from the other two subspecies may be due to early crosses with M. m. molossinus, likely as a result of interactions between mouse fanciers in Japan and Western Europe. A fifth subspecies, Mus musculus gentilulus, has been described from collections in the southern Arabian Peninsula. Additional subspecies may yet be defined. In particular, populations in Afghanistan, Pakistan and Iran may be genetically distinct.
Habitat and life style
Unique among other species in the genus Mus, house mice primarily live in close proximity to humans. Although feral populations exist, house mice are commonly found in residential, agricultural, and commercial structures. The rise of agrarian societies is very recent compared to the divergence among house mice subspecies, indicating that commensalism evolved independently in each of the three subspecies. House mice are omnivorous with varied diets including grains, seeds, and insects. They generally weigh less than 20 grams and serve as food for predatory snakes, birds and mammals. Laboratory mice tolerate regular handling by humans and live and breed in a small area. Their commensal life style, small size, and flexible diet have likely been key to their success as a model system.
Reproduction and social structure
The reproductive biology of mice is also favorable for laboratory breeding. Mice have short generation times; gestation lasts approximately 3 weeks and they are sexually mature at 6–8 weeks of age. Thus, generation times in the lab are between 9 and 11 weeks. In the wild, females may breed seasonally with one or two litters per year or they may breed year round if resources are available (; reviewed in; ). In the lab, with unlimited food and good environmental conditions, females can breed year round. Litter sizes in the wild are large (∼4–9 pups), a trait that facilitates the efficient generation of inbred strains (see; ). House mice in the wild have variable social structures, ranging from discrete ‘demes’ with a single male and one to several adult females and juveniles, to high-density aggregations in which adults are socially gregarious and have largely overlapping ranges. While males can be territorial, females are known to mate with multiple males. Female house mice tend to live in extended family groups and can nest communally and nurse offspring communally (reviewed in ). Mice found in a limited geographic area are likely to be related, and the average inbreeding coefficient (see ‘Glossary’) of wild-caught mice in one study was ∼0.2. This natural level of inbreeding may help to purge recessive deleterious alleles and may have facilitated the creation of inbred strains in the laboratory.
Disease
Wild mice can carry a variety of diseases, including mouse hepatitis virus, mouse mammary tumor virus and mouse parvovirus. They can also be vectors for human diseases, such as leptospirosis, cryptosporidiosis, salmonellosis, and streptobacillosis (summarized in ). However, unlike rats, they are not known to be major vectors of the plague or of hemorrhagic fevers like hantavirus. They are commonly parasitized by tapeworms, flukes, fleas and lice. As such, wild mice are routinely quarantined before they enter mouse facilities.
Phenotypic variation
Wild house mice (Figure 2) exhibit considerable phenotypic variation, and it is likely that much more remains to be described. In association with humans, house mice have been spread around the world and have adapted to a wide range of environments (e.g., ). Mice can be found from sea level to over 4000 m in elevation, from the tropics to subarctic environments, and in both dry and wet environments. Studies of water balance in wild populations suggest that house mice can adapt to arid habitats.
Phenotypic variation among wild house mice has been described along environmental gradients. For example, surveyed populations of house mice on the east coast of the United States and found that mice from more northern latitudes were bigger and built bigger nests than those from more southern populations. These differences persisted in the lab over several generations, demonstrating a genetic basis. Selection experiments also provide evidence that house mice have the ability to rapidly adapt to cold temperatures. Wild mice bred at 3°C for 10 generations were more fertile, with larger litters of larger body size, and reached sexual maturity earlier than mice bred at 23°C. Rapid phenotypic change has occurred on many islands, including shifts in size, morphology, and diet (e.g., Berry et al., 1978;;; ). One example comes from mice on Gough Island, a small island in the Atlantic Ocean approximately halfway between South Africa and Argentina. House mice were likely introduced to this island by sealers or whalers in the 19th century and are the only terrestrial mammals living on it. Gough Island mice live independently of humans, are large compared to European house mice, and eat seabird chicks, including those of the critically endangered Tristan albatross (e.g.,;; ). These mice are alarming from a conservation perspective, but they are intriguing from an evolutionary one. Variation in natural populations is fertile ground for exploring the genetic basis of complex traits. Such efforts could add to the decades of study of complex traits in inbred strains of mice (such as body size,; ).
Genetic variation
Populations of wild house mice exhibit levels of genetic variation that are several-fold higher than those seen in human populations, consistent with the larger effective population size for house mice. Patterns of genetic variation in natural populations have provided insight into the demographic and evolutionary history of wild mice (e.g.,;;; ) and have helped us to understand how natural selection has shaped patterns of genetic variation (e.g.,,;; for review, ). For example, some beneficial variants appear to have come from introgression between subspecies or between closely related species.
Despite the substantial level of genetic variation seen in wild house mice, the commonly used classical inbred strains of laboratory mice derive from a limited set of founders and thus contain only a small subset of the genetic variation that is seen in nature. As a result, there are many genomic ‘blind spots’ in crosses involving classical inbred strains. Since the 1970's, new inbred lines have been established using wild mice. Levels of diversity are much higher among these wild-derived inbred strains than among classical inbred strains (e.g.,; ). Several recent outcrossed populations have also been developed from classical and wild-derived inbred strains, including the Heterogeneous Stock mice and the Collaborative Cross mice. Both of these outbred mapping populations contain more genetic variation than do mice derived from crossing classical inbred lines, and they also have more recombination, permitting traits of interest to be mapped with improved resolution. However, they are not without their limitations. First, much of the genetic variation is due to differences between subspecies. Second, since crosses between subspecies result in partial hybrid sterility, selection effectively eliminates genetic variation in some regions of the genome in these crosses. Third, mapping intervals are not typically at the resolution of individual genes. The development of additional inbred lines of wild-derived mice should help address these limitations and augment existing resources.
Insights from wild house mice
Here, we briefly highlight a few examples in which studies of wild house mice have provided insight into fundamental questions concerning mammalian biology. This is not a comprehensive review; research on wild house mice encompasses a diverse range of topics, only some of which are touched on here. For more information, we refer readers to ‘The mouse in biomedical research’, ‘The genus Mus as a model for evolutionary studies’ and ‘Evolution of the house mouse’.
Immunity: the Major Histocompatibility Complex
The Major Histocompatibility Complex (MHC) is a family of strikingly polymorphic genes that have a critically important role in the immune response of vertebrates. Proteins encoded by MHC genes bind peptides derived from pathogens and present them on the cell surface for recognition by T cells. MHC genes were first discovered in classical inbred strains of house mice (reviewed in,; ). Wild house mice have also played a major role in advancing our understanding of the MHC. For example, the high level of variation seen at MHC genes was first discovered in populations of wild mice and has since been documented in many other vertebrates. This discovery spawned a considerable amount of research aimed at understanding the evolutionary forces that maintain such diversity. These studies have led to some intriguing findings regarding the possible functional significance of MHC diversity in wild mice and other organisms. One area of particular interest is mate choice. Data suggest that individual mice prefer mates with dissimilar MHC haplotypes, a form of disassortative mating (e.g.,; reviewed in ). Such mating preferences could function to improve offspring resistance to pathogens, reduce inbreeding, or both. However, the relative importance of MHC in mate choice in wild populations remains unresolved; there are many other factors that have been shown to affect mate choice. Moreover, the specific mechanism by which individuals identify MHC-dissimilar individuals remains obscure.
Cancer: retroviruses and the Lake Casitas mice
In the late 1960's, virally induced cancers were known to occur in laboratory mice and in chickens, but had yet to be discovered in humans. Robert Huebner and Murray Gardner hypothesized that resistance to viral cancer was likely present in wild mouse populations but had been lost in laboratory strains through inbreeding. Gardner embarked on a mission to sample wild populations of house mice. While he found disease-free mice at most sites, at a poultry farm near Lake Casitas in California, he found ∼85% of the mice carried murine leukemia virus (MuLV). Infected mice developed severe lymphoma and/or hind limb paralysis after sexual maturity. Despite the severity of the disease and evidence of transmission, the population did not crash and many mice were apparently unaffected. Gardener and his colleague, Stephen O'Brien, hypothesized that an anti-retroviral genetic element was segregating in the Lake Casitas mice, protecting some from infection. This proved to be the case; they found an allele at a single locus that conferred complete resistance in homozygotes and was inherited in a Mendelian fashion. Researchers in Japan independently identified a common viral cancer, as well as endogenous retroviral sequences (see ‘Glossary’) in M. m. molossinus. Ultimately, it was shown that resistance in the two populations localized to the same gene.
How did the resistance allele prevent infection? And why were two mouse populations on either side of the Pacific Ocean, thought to be different subspecies, polymorphic for the same protective allele? The resistance locus was itself a truncated endogenous retrovirus in which only the subunit responsible for the creation of the viral envelope remained intact (see ‘Glossary’). When a virus replicates in a cell, some of its envelope proteins bind to receptors on the cell, preventing additional viruses from entering. Thus, resistance to MuLV in the Lake Casitas and Japanese mice was conferred by cells that produce harmless endogenous viral envelope proteins, blocking the binding of the virulent MuLV viruses. These populations of mice share the resistance allele because they have a shared evolutionary history. Japanese mice descend from hybridization between M. m. castaneus from Southern China and M. m. musculus from northern China. While the resistance gene and the virus were undetected in M. m. musculus, they were both found in M. m. castaneus. Although mice in North America were originally believed to be entirely of M. m. domesticus origin, the Lake Casitas mice are hybrids of M. m. domesticus and M. m. castaneus. The Lake Casitas farm was originally settled by immigrants from China in the 19th century, who likely brought M. m. castaneus with them. The Lake Casitas mice have provided insight into the mechanisms of resistance to retroviruses, the dynamics of disease outbreaks, and the origins of sequences derived from retroviruses found throughout vertebrate genomes, including humans.
Structural rearrangements and non-Mendelian inheritance
Two kinds of structural rearrangements in the genomes of wild mice have provided insight into genome evolution and into chromosome transmission during meiosis: Robertsonian (whole-arm) chromosomal translocations (also called fusions) and t-haplotypes, which are associated with chromosomal inversions (see ‘Glossary’). The karyotype of wild mice typically consists of 2n = 40 acrocentric chromosomes. However, numerous populations exist within the subspecies M. m. domesticus in which the diploid number is as low as 2n = 22 as a result of Robertsonian fusions between two different acrocentric chromosomes, creating a metacentric chromosome (e.g.,; ). Otherwise indistinguishable from mice with the standard karyotype, some karyotypic races show some reproductive isolation as a consequence of the mis-pairing of chromosomal heterozygotes in hybrids and the production of aneuploid gametes or complete meiotic arrest (reviewed in ). Interestingly, some Robertsonian heterozygotes show transmission distortion in meiosis, preferentially transmitting the acrocentric products (instead of the fused, metacentric chromosome) to the oocytes in female meiosis. In these cases, the metacentric chromosomes are preferentially distributed to the first polar body.
T-haplotypes are meiotic-drive systems (see ‘Glossary’) found at low frequency in natural populations. T-alleles are associated with inversions on chromosome 17, and they show a strong transmission distortion in meiosis, with heterozygotes transmitting the t-bearing allele to over 90% of gametes. The responder locus (see ‘Glossary’) was first identified and molecularly characterized 15 years ago, but transmission distortion was first documented in 1927 (reviewed in; ). Decades of research have made t-haplotypes one of the best-studied meiotic-drive systems in any organism, providing a model for understanding non-Mendelian inheritance.
Adaptation: rodenticide resistance
One consequence of a commensal lifestyle is an ongoing arms race with humans intent on extirpating mice and reducing food loss and the spread of disease. Warfarin-based rodenticides were introduced in the 1950's and have been periodically replaced by other rodenticides that have anticoagulant properties owing to the development of resistance among rats and mice (e.g., reviewed in;; ). The study of rodenticide resistance in wild populations has provided insights into the molecular biology and biochemistry of anticoagulants and mechanisms of resistance to those agents. Importantly, the spread of rodenticide resistance has also led to insights into the process of adaptation (e.g.,,; ). For example, found that an allele of the mouse gene Vkorc1, which underlies resistance to warfarin in M. m. domesticus, resulted from adaptive introgressive hybridization (see ‘Glossary’) with the Algerian mouse (M. spretus). This study is one of many recent studies that highlight that adaptive introgression is an often overlooked source of new variation in animals.
Speciation and hybrid male sterility
Laboratory crosses between some subspecies of house mice produce hybrid males that are sterile or have reduced fertility (e.g.,; ). In nature, house mouse subspecies hybridize where they meet in secondary contact. The best-studied hybrid zone is between M. m. domesticus and M. m. musculus in Central Europe (e.g.,;,;;;;; ). This hybrid zone is young; colonization of this area is relatively recent (∼3000 YA; for example,; reviewed in ). Studies of this hybrid zone, and of laboratory crosses between these subspecies, have helped us to understand speciation genetics, particularly the genetic basis of hybrid male sterility (e.g.,;; ). For example, evidence from natural populations and from laboratory crosses has revealed an important role of the X chromosome in reproductive incompatibilities, a pattern that appears to be quite general across animals. Studies of wild house mice have also found that hybrid male sterility has a complex basis, involving many genes. Laboratory crosses between M. m. domesticus and M. m. musculus also led to the positional cloning of Prdm9, the only gene known to contribute to hybrid sterility in vertebrates. This gene has a role in recombination rate variation in both mice and humans (e.g.,;; ). The identification of other genes underlying hybrid male sterility remains a challenge, but the combination of mapping studies in the lab and studies of regions showing limited introgression in nature might identify good candidates for future study.
Conclusions: the next frontiers
As outlined in Box 3, much remains to be learned about wild mice, even in the areas of research highlighted above. Genetic variation, phenotypic variation, variation in disease and parasite load remain uncharacterized in many wild populations throughout the world. The genetic bases for adaptive phenotypes are largely unknown. Contact zones between subspecies outside of Europe are mostly unexplored. Wild mice are an untapped reservoir of genetic variation. The generation of new wild-derived inbred strains would add a valuable component to existing mouse resources by adding new genetic variants. Moreover, since haplotype blocks are much shorter in wild mice than in classical inbred strains, association mapping (see ‘Glossary’) with wild mice could help link individual genes to phenotypic differences. New more efficient genome-editing methods will also enable the direct testing of the effects of wild alleles on phenotypes. Thus, there is great potential for wild mice to continue to fuel new advances in the biosciences.
DOI: http://dx.doi.org/10.7554/eLife.05959.005
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