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Immunohistochemistry as an Important Tool in Biomarkers Detection and Clinical Practice

Leandro Luongo De Matos, Damila Cristina Trufelli, Maria Graciela Luongo De Matos and 1 more

Biomarker Insights · 2010 · Review

doi:10.4137/bmi.s2185

Abstract

The immunohistochemistry technique is used in the search for cell or tissue antigens that range from amino acids and proteins to infectious agents and specific cellular populations. The technique comprises two phases: (1) slides preparation and stages involved for the reaction; (2) interpretation and quantification of the obtained expression. Immunohistochemistry is an important tool for scientific research and also a complementary technique for the elucidation of differential diagnoses which are not determinable by conventional analysis with hematoxylin and eosin. In the last couple of decades there has been an exponential increase in publications on immunohistochemistry and immunocytochemistry techniques. This review covers the immunohistochemistry technique; its history, applications, importance, limitations, difficulties, problems and some aspects related to results interpretation and quantification. Future developments on the immunohistochemistry technique and its expression quantification should not be disseminated in two languages–-that of the pathologist and another of clinician or surgeon. The scientific, diagnostic and prognostic applications of this methodology must be explored in a bid to benefit of patient. In order to achieve this goal a collaboration and pooling of knowledge from both of these valuable medical areas is vital

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From PubMed Central, U.S. National Library of Medicine, as current on Oct 18, 2026. Paragraph numbers are ours, so an answer can point at one.

The Immunohistochemistry Technique

The immunohistochemistry technique is used in the search for cell or tissue antigens ranging from amino acids and proteins to infectious agents and specific cellular populations. The technique comprises two phases: (1) slide preparation (specimen fixation and tissue processing) and stages evolved for the reaction (in order: antigen retrieval, non-specific site block, endogenous peroxidase block, primary antibody incubation, and the employment of systems of detection, revealing and counterstaining and also slide mounting and storage); (2) interpretation and quantification of the obtained expression.

Immunohistochemistry is an umbrella term that encompasses many methods used to determine tissue constituents (the antigens) with the employment of specific antibodies that can be visualized through staining., When used in cell preparations it is called immunocytochemistry, a term that some authors use for all methods entailing the immunological search of cell antigens, even when this involves tissue slices.

Brandtzaeg stated that immunostaining for cell markers represents a way to “talk with cells”, because it allows not only the histological origin of the cell to be identified but also indicates its function in vivo, when duly investigated with the correct antibodies.

The same author affirmed that it is lamentable and non-justifiable to classify immunohistochemistry as a merely descriptive method. He also emphasized that many reviewers, not aware of the accuracy of immunological detection methods, may consider them an inferior research tool where many manuscripts are refused on these grounds. He concluded that in vitro and in situ trials are in fact “pictures” of the situations that occur in vivo and therefore constitute one of the pillars of biomedical research. This includes immunohistochemistry, the importance of which is growing.

History

The history of immunostaining methods began when Marrack produced reagents against typhus and cholera microorganisms, using a red stain conjugated to benzidin tetraedro. However, Professor Albert H. Coons from Harvard School of Medicine—Boston, U.S.A. believed that the antigen detection provided by red color in tissue slices had very low sensitivity under optical microscopy and, in the early nineteen forties demonstrated that localizing antigens, especially microorganisms, was possible in tissue slices using antibodies against Streptococcus pneumoniae stained with fluorescein, visualized by ultra-violet light (fluorescence microscopy).

Subsequently, the introduction of enzymes as marked antibodies, developed by Nakane, heralded a new and important era for immunohistochemistry, since it was possible to see these reactions through optical microscopy. These results had great impact and were much awaited in the nineteen sixties.– This innovation took immunohistochemistry beyond the exclusive sphere of laboratories equipped with fluorescence microscopes, and the technique spread to a broad group of researchers and pathologists.

The following discoveries of the unlabelled antibody peroxidase-antiperoxidase (PAP) method by Sternberger et al and the alkaline phosphatase-antialkaline phosphatase (APAAP) method by Mason et al, significantly expanded the application of immunohistochemistry technique., The diaminobenzidine molecule (DAB) was also conjugated to antibodies during the same period, currently representing the most used chromogen for peroxidase, and as it produces an electrodense precipitate which is also used in electronic microscopy, substituting ferritin. Subsequently, gold colloidal particles were introduced as immunohistochemical colorations and this finding rapidly led to an important method of subcellular immunostaining.

The discovery of antigen retrieval methods (exposure of antigen epitopes present in study tissue, favoring the antigen-antibody reactions for the next stages of the technique) by Huang et al, and also the systems of secondary antibody detection (for example the avidin-biotin-peroxidase complex—ABC and the labeled streptavidin-biotin complex—LSAB) by Hsu et al– allowed immunohistochemistry to be used in fresh specimens as well as in fixed tissues, which further increased the applicability of the technique in pathology diagnostic routines. However, only after the presence of tissue antigens could be demonstrated by the immunoperoxidase technique in tissues fixed in formalin and embedded in paraffin, did immunohistochemistry really became incorporated into the diagnostic routine of pathological anatomy.–

In the last couple of decades there have been an exponential increase in publications on immunohistochemistry and immunocytochemistry techniques (Fig. 1). This literature is available in many cellular and molecular biology, biochemistry, pathology, histology, immunology, internal medicine and surgery scientific articles.

This fact reflects the position that immunohistochemistry currently holds in a pathological anatomy laboratory. It is an important tool for scientific research and also a complementary technique in the elucidation of differential diagnosis which are not determinable by conventional analysis with hematoxylin and eosin.,–,,– The great improvement in the contribution and application of immunohistochemistry in pathological anatomy became known as the “brown revolution” of the histopathology laboratory.

Applications and importance

The immunohistochemical reactions can be used in different situations within research or pathological anatomy laboratories. The most important are: 1) histogenetic diagnosis of morphologically non-differentiated neoplasias (Fig. 2); 2) subtyping of neoplasias (such as lymphomas, for example); 3) characterization of primary site of malignant neoplasias; 4) research for prognostic factors and therapeutic indications of some diseases; 5) discrimination of benign versus the malign nature of certain cell proliferations (Fig. 3); identification of structures, organisms and materials secreted by cells.,,,,,

Werner and colleaguesevaluated the reason for employment and number of cases in which immunohistochemistry aided the diagnosis of neoplasias and pseudo-neoplastic lesions. It was noted that from a total of 3,760 specimens, in 19% of cases immunohistochemistry was used to determine prognostic factors or proliferative indexes; 17% of cases had the purpose of identifying microorganisms, cells, structures or secreted materials; and 64% of cases had a diagnostic application. From the 835 cases of this latter category immunohistochemistry contributed in 83% for specific diagnoses and decreased the number of non-defined diagnosis by 12%. In 5% of cases immunohistochemistry did not aid the pathologist due to the exiguity of some samples, presence of extensive necrosis, or extreme non-differentiation of some neoplasias. Data present in the literature on this subject is rare, however this study corroborates the results shown.,, They therefore concluded that immunohistochemistry is a helpful complementary diagnostic method in 95% of cases and contributes toward surgical and therapeutic conducts, with low cost and high benefit.

Limitations, difficulties and problems

Although a relatively simple technique, immunohistochemistry has some particularities and its outcome depends on many factors. The usefulness and contribution of immunohistochemistry in solving problems in pathological anatomy is directly proportionate to the experience of the hands that perform the reactions and also the eyes that interpret the results.,,,, Therefore, even though very simple in concept, immunostaining methods requires rigor of execution and may present significant bias. Hence, its outcomes must be interpreted with caution.

A recent review discusses the main bias that may follow the analysis of immunohistochemistry reactions. These are didactically divided into reaction bias (examples: specimen fixation, tissue processing, antigen retrieval and detection system) and interpretation bias (examples: selection of antibody panels, sensitivity of the chosen panel, choice of antibody types and clones, results and literature interpretation).

A wide variety of protocols for standardizing the immunohistochemistry technique are being proposed to minimize undesirable effects. The Committee of Quality Control in Immunohistochemistry of the French Pathology Society published a report in 1997 demonstrating that two of the main causes of diagnosis mistakes in immunohistochemistry are the non-employment of antigen retrieval techniques and the use of amplifying methods with low power. Other renowned international quality programs are the electronic database Immunoquery (“Immunohistochemistry Literature Database Query System”) and the UK NEQAS quality program (“United Kingdom National External Quality Assessment Scheme for Immunocytochemistry”).–

The acquisition, handling, fixation, specimen delivery to the laboratory and antigen retrieval are all critical factors. Fresh specimens that are inadvertently submitted to long periods of fixation may significant lose antigenicity., As an example, Jacobs and colleagues showed that there is progressive loss of antigenicity upon only 12 week storage of breast cancer histological slices on slides stored in ambient temperature for the detection of p53, Bcl-2, estrogen receptor and factor VIII proteins. However, the same was not observed in recent histological slices of specimens in paraffin blocks for periods of over 10 years. The specimen fixation in formaldehyde and its consequent inclusion in paraffin are the internationally most used histological processing procedures. Some specialists propose that this procedure should be the standard for comparing diagnostic outcomes among immunohistochemistry reactions. However, formaldehyde fixation results in a variably reversible loss of immunoreactivity by its masking or damaging some antibody binding sites. Although such epitopes may be demasked by several epitope retrieval methods, the immunohistochemical detection system must still be sensitive enough to produce a strong signal. For some epitopes, the duration of the formaldehyde fixation is critical. With some antibodies, depending on the resistance of its target epitope to autolytic change, delay in fixation may cause loss of immunoreactivity.

Other fixatives often used in pathology include alcohol and alcohol-based fixatives such as acetone. Alves et al studied the fixation in ethanol and formalin for trypsin digestion in immunohistochemical detection of cytokeratins and vimentin in a case of ovarian cystadenofibrocarcinoma. They found superior reactivity for both markers in achieved ethanol-fixed sections, even in samples stocked up to 60 days. Cytokeratin reaction in formalin-fixed sections was better when trypsin was used. However, this digestion was deleterious to vimentin detection. This was an import work to alert surgeons and oncologists on the relevance of fixation of specimens suspicious for neoplasia, since different epitopes may require different fixatives and the inadequate choice in the operative room may impart difficulties when immunohistochemistry is necessary.

It is important to emphasize that in tissue processing, inclusion in paraffin at high temperatures (in general, over 60 °C) may compromise the specimen antigenicity. Another important point addresses the preparation of slides. The block slices must preferentially present a thickness ranging between 3 and 7 μm and must be deposited on slides previously prepared with some kind of adhesive (the most used are silane and polylysine). Slices less than 3 μm thick could result in very weak immunostaining while those thicker than 7 μm may lead to loss of tissue on the glass slide or may hamper analysis of the resultant immunostaining.

The amount of material to be analyzed is being discussed, especially now that pathologists are expected to reach a precise diagnosis with small samples. In the majority of situations a block is sufficient, preferentially when it contains a fragment of the tumor-surrounding parenchyma interface (prepared in the macroscopic examination), distally to hemorrhagic or extensively necrotic areas, as well as a fragment representative of the tissue distal to the neoplasm. Whenever possible, tissue that was previously submitted for frozen examination must be avoided.

Regarding antigen retrieval, the simplification of procedures, costs and technical error risk reduction are important factors. Irradiation techniques with microwaves or by humid heat in pressure or vapor pan, with exposition times adapted to offer the same pattern of staining in a group of case-controls has been suggested.,,

The use of detection systems (secondary antibodies) is also considered valuable in error reduction. Among high discharge amplification systems, the avidin-biotin-peroxidase complex (ABC) and the labeled streptavidin-biotin complex (LSAB) are the most important.– Specific situations require adaptations and even the use of alternative detection methods.

The selection of an adequate method is one of the great technical responsibilities faced in an immunohistochemistry laboratory. The advance in the technique, with systems of epitope retrieval through heat (HIER) and amplification methods, as well as the reactions performed in a single stage (EPOS) and the method of catalyzed product deposition (CARD),, have introduced a paradox in immunohistochemistry. On the one hand numerous cases hitherto unsolved because of negativity in many panels, became positive and began to permit precise diagnosis. On the other hand, antibodies that were expressed characteristically in certain neoplasias began to react non-specifically in other situations., Concerned about the so called “anarchy” then introduced, Swanson proposed that no method should be universally applicable, the choice should be based on the technique that, in the experience of the laboratory or of the school followed by researchers, best solves the diagnostic question.

Due to their flexibility and relatively low cost, the most used protocols currently (such as the ABC method, for example) are indirect and therefore require many stages of incubation. High sensitivity could be obtained with the application of immunological principles, enzymatic amplification reactions and/or the employment of avidin-biotin complex, however the various steps required must be rigorously followed in order to avoid non-desirable interactions. It is fundamental that, on technical planning, all reagents follow the sequence rigorously established, where the employment of work flow charts for such stages are very useful in avoiding false results. Making notes of all reaction stages and pattern of each antibody are equally important and are suggested in patterning technique programs.

The ability of the specialized technician who performs the reactions is a guarantee against the introduction of crossed immunological reactions with endogenous immunoglobulins during the test preparations, or with different sequence experiments of immunostaining with many colors.

The selection of antibody panels is one of the most important aspects for optimal applicability of immunohistochemistry. Studies from Jensen and colleagues, concluded that the selection of the antibody panel and the interpretation of the reaction patterns of each case were the most important factors for the final diagnostic outcome. This observation was fundamental because the detection sensitivity of the chosen panel evidently increases with increased practice and experience of the pathologist who indicates the method, combined with the clinical data analysis by the researchers. Prescott and colleagues attributed 42.1% of the diagnostic discrepancies in immunohistochemistry to poor antibody selection.

The knowledge of each reagents’ characteristics, especially those of antibodies, requires new titration in each new batch or clone, selecting the dilution that offers the greatest “true/background positivity” contrast.,

The primary antibodies can be divided into two categories: poly or monoclonal. The polyclonal group are those obtained from animal immunization (example: rabbit, goat, monkey, rat, mouse, ewe etc) and results in antibodies that are capable of recognizing many epitopes of the same antigen, generating higher detection sensitivity. The monoclonal type, however, are developed from hybrids and provide antibodies against only one antigen epitope, yielding more specific results.,,

Regarding the validation of findings and their interpretation, it is necessary to observe the reactivity patterns of the negative and positive, internal and external controls. The external controls (histological slices of specific tissues for each antibody) must be included in each panel, prepared from the samples fixed under the same conditions as the test cases and submitted to the same stages of the reaction. Attention must also be paid to the reactivity of structures present on the slide of the case being studied that may be used as internal positive controls, such as the reactivity of vessels for vimentin, muscle and endothelial markers, or breast ducts adjacent to the neoplasm for estrogen and progesterone receptors. Similarly, structures knowingly negative for a marker offer an excellent internal negative control, since they were submitted to the same treatment as the test-tissue, for example the erythrocytes within blood vessels—a great endogenous source of peroxidase.,,,,

Interpretation of Immunohistochemistry Expression

The interpretation of immunohistochemistry expression is generally made in a qualitative and subjective manner, whereas quantification is considered of little or no importance. Frequently, a diagnostic decision is based on cellular presence or absence of a particular molecule.

Nowadays, an increasing cause of contradictory results in the literature is the lack of a definition on what constituted a positive result. In the majority of specialized studies, a result known as “positive” refers simply to the presence of brown staining (peroxidase) in any part of the studied tissue. Some authors however, extrapolate this definition and consider it a wider concept, leading to confounding factors. An example of this dilemma is the interpretation of S-100 protein expression that, for some authors, must be nuclear and cytoplasmic, while for others the staining of only the cytoplasm is sufficient to consider the immunoexpression positive. In a similar manner, studies with the HER2 protein where positive cases can include those in which the staining was exclusively cytoplasmic.– However it is known that only the cases with staining for the cellular membrane are associated to the amplification of its gene as determined by molecular methods of detection. The answer to this question is to consider as positive the slide that presents brown staining (positive) and to then analyze the expression of the target-molecule in a clinical-morphologic context. The immunoexpression in different cellular compartments or in extra-cellular matrix components of the same marker can indicate that it is performing distinct or even opposite biological functions. It is fundamental, for the correct interpretation of a immunohistochemistry expression, to know the functions and the biological phenomena in which the studied molecule is involved and, based on this knowledge, the real clinical relevance of this immunoexpression can be defined.

There is a rule that tries to avoid some of these problems: when the location of a target-molecule is known, the immunoreactivity pattern must follow the micro-anatomic or subcellular (cellular compartment) distribution of the antigen. For example, a granular intra-cytoplasmatic pattern should be observed when antibodies that detect molecules contained in cytoplasmatic vesicles (examples: chromogranin, von Willebrand factor, HMB-45) are employed. In this way, when the staining of an antibody, whose function is well documented and known, does not manifest as expected many authors consider it a false-positive result. However, it is important to emphasize that the researcher can be confronted with another biological function of the studied molecule, as yet undescribed.

The validation of results in cases of ambiguity can be solved using antibodies against different epitopes of the same molecule, or by the detection of correlated antibodies (for example, synaptophysin and chromogranin are both frequently expressed in neuroendocrine tumors).,

However, when the nature of an antigen or its function has not yet been totally elucidated, determining if the positivity of a given immunohistochemistry expression is relevant could prove hard. The possibility exists of a false-positive result, but also that the cell in question plays distinct biological roles depending on the cellular compartment where the immunostaining is present.

The interpretation of immunostaining depends on the quantity of antigen present in the tissue and according to some authors,, on the determination of cut off values between what must be considered as positive and negative results, although it is important to emphasize that this quantifying methodology is not adequate. These values are often arbitrarily determined, not obtained by other laboratories and its intra-laboratory reproducibility has frequently not yet been tested. Among all these reasons, certainly the inter-laboratory reproducibility of the results of immunohistochemistry reactions is one of the most difficult challenges faced.,

In order to minimize these discrepancies, Seidal and colleagues suggest that more accurate quantifying methods should be adopted and studies encouraged that are dedicated to developing and refining them.

Quantification of Immunohistochemistry Expression

Soon after the introduction of immunohistochemistry as a routine technique in pathology laboratories, efforts were made in order to try quantify protein expression using immunohistochemistry.– Many studies have demonstrated that there is a correlation between the results obtained from the immunohistochemistry quantification and the tissue concentration of the antigen in question.,,

The biological colorations (which includes those performed with aniline, hematoxylin and/or eosin for example) are usually difficult to control in terms of staining intensity. This makes the comparison from cell to cell difficult as well as from slide to slide (between different tissues and between slides prepared on different days). This difficulty tends to decrease with the introduction of automatic techniques of coloration.

The reagents employed in the immunohistochemistry technique present the potential to give true quantitative results. Most researchers, however, do not consider this possibility because they often do not observe the fact that this technique is no more than an immunological test carried out in situ or in histological slices. The obtained staining by the immunohistochemistry technique is analogous to the results obtained in an ELISA test (enzyme-linked immunosorbent assay), a method recognized worldwide as truly quantitative. Exactly the same reagents that are applied in a serum test of ELISA can be employed for immunohistochemistry reactions in histological slices of specimens in paraffin blocks. Nevertheless, it is curious that the application of the same immunological principles and reagents are accepted as truly quantitative in the ELISA test, but when applied in histological slices (immunohistochemistry) are called merely “staining”. The statistically significant correlation between the result from the quantification of the immunohistochemistry reaction and protein levels have been demonstrated through various measurement methods, including Western blotting– and immunoenzymatic methods.–

As the need for an accurate immunostaining measurement is rising, quantitative biochemical methods of tissue detection are being progressively substituted by immunohistochemistry. Some question whether this precision is in fact achievable, or even necessary. However, advances in molecular biology and the emergence of new treatments for cancer will certainly increase the demand for precise results of a series of new molecules or target-genes, as a patient selection method for a given treatment. An example that already exists is the use of trastuzumabe in patients with breast carcinoma that presents 3+ or greater immunostaining for the HER2 oncogene. Therefore, studies will be developed in a progressively higher number of tissues, because the immunohistochemistry will likely be the chosen tool in the detection of these molecules.

Many semi-quantitative measurement methods of immunohistochemistry reactions based on visual scores have been proposed in an attempt to improve this quantification., However, image analysis assisted by computer is proving superior compared to visual estimates in the establishment of quantitative results of immunohistochemistry reactions.

Semi-quantitative analysis

As seen previously, the tissue expression of biomarkers employed in the immunohistochemistry technique can occur in different cellular compartments and even in extra-cellular matrix constituents., The evaluation of this reactivity may vary from essentially positive or negative to immunostaining intensity and/or extension, which constitutes an attempt towards immunohistochemistry technique quantification, frequently denoted in the literature as a “semiquantitative method”.

When the intensity is the evaluation focus, the inclusion of reaction controls containing different levels of staining are required for comparing criteria. Subjective scores, such as those that categorize the reaction in groups of null, weak, moderate and intense immunostaining, depend very much on the researcher’s experience and are therefore unsuitable.,

To estimate the extension of immunostaining can also vary from a meticulous counting to a “glance” over the slides. The evaluation of the percentage of labeled cells trough the categorization of scores of the obtained percentage are less precise. Examples of the employment of this methodology includes the count of micro-metastases in bone marrow samples or the measurement of peritumoral blood vessels. In these examples minimal variances of immunoreactivity intensity, attributed to the staining method or to the fixation procedure, have little impact on the quantification itself. A similar attempt of quantification can be exemplified by the estimate of the proliferation index through immunostaining by Ki67 (MIB-1), or by factors related to the cellular cycle such as P53 and P21, in which a simple count leads to the quantity of normal and neoplastic cells. Such methods demonstrate low reproducibility and consistency of results in terms of cut off values with relevant sensitivity.

Score systems were introduced to clinical practice in an attempt to overcome variances, particularly for markers that aim to select patients for specific treatments. It is important to emphasize that all scores, including those mainly used in daily practice, have demonstrated statistically significant relevance with regards to clinical variables when used by experienced researchers in the area, although they are laborious and fatiguing.

Computer-assisted quantitative analysis

The computer-assisted image analysis has been in use since the 1980s,, without a well defined historical sequence, and has proved superior to the semiquantitative method, especially in terms of its quantification accuracy in many kinds of markers,,,– representing the solution for the reproducibility and applicability of the semi-quantitative score systems, because it yields itself to the desired quantitative result. Comparative studies demonstrate that, in controlled circumstances, the system of image analysis was superior to the manual methods when performed by many observers.,–

Perspectives

The future perspectives point to new discoveries that should make the immunostaining methods simpler. An already available example was the introduction of the reactions performed in a single stage (EPOS). This involves an inert polymer in which many molecules from the primary antibody and peroxidase are chemically connected, consequently decreasing the number of incubation stages, and is currently commercially available. Other important achievements were the development of semi-automatic machines especially devised for the immunohistochemistry technique and the microarray technology that will be fundamental in the selection of proteins implicated in diagnosis, prognosis and therapeutic decisions of many diseases. Despite its high cost, this type of technology could be fundamental to pathology laboratories in which the diagnostic routine is very extensive. In addition it could also be of great value in the standardization of the employed technique and the reproducibility of the results.

Without doubt, the development of quantification methods for the immunohistochemistry technique, mainly those which are computer-assisted, have increased not only the accuracy in the detection of markers, but also the reliability of their results. Most larger laboratories, until recently, were those which held this technology compared to small laboratories and academic centers, largely due to economic reasons., However, with the recent spread, practicality, reproducibility and reliability of obtained results along with falling costs of systems of computerassisted image analysis is changing this panorama. At present, immunohistochemistry quantification is widely employed in many areas, not only in pathology, but also in various medical areas with particular impact in the clinical daily practice.

Future developments of the immunohistochemistry technique and its expression quantification should not be disseminated in two languages—that of the pathologist and that of the clinician or surgeon. The scientific, diagnostic and prognostic applications of this methodology must be explored in a bid to benefit of patient. In order to achieve this goal the collaboration and pooling of knowledge between these two valuable medical areas is vital.

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