Molecular Mechanisms Underlying Abscisic Acid/Gibberellin Balance in the Control of Seed Dormancy and Germination in Cereals

1Cereals are among the most economically important crops worldwide with annual production of over 2500 million tons. However, their production is challenged by a wide range of biotic and abiotic stress factors including the occurrence of high humidity and wet conditions prior to harvest that causes germination of the grain on the spike, which is also referred to as preharvest sprouting. Grain yield and end use quality losses due to preharvest sprouting are reported to cause an annual loss of around $1 billion worldwide. Preharvest sprouting of cereal grains is closely associated with the degree of dormancy, an adaptive trait that inhibits the germination of seeds under optimal environmental conditions. However, domestication and selection of cereal crops from their wild relatives have been focused on ensuring uniform germination and seedling establishment, and this has led to the development of modern cultivars with low level of dormancy, making the seeds susceptible to field sprouting when moist and wet conditions occur before harvest. Since high level of dormancy in cereal seeds can also cause undesirable consequences such as uneven and slow postharvest germination of seeds, optimum level of seed dormancy is always required to enhance the yield and quality of cereal crops.

2Loss of seed dormancy can be induced by different treatments, including after-ripening, cold stratification, and light. Dormancy loss in the seeds of cereals such as wheat has been shown to be associated with changes in the physiological state of the seed, which involves alterations in gene and protein expression, oxidative modification of gene transcripts and proteins, and epigenetic modifications. Previous studies have also provided important insights into the significance of the metabolic and signaling aspects of different plant hormones and their potential interaction in the maintenance and release of dormancy in cereal seeds. Among the different plant hormones, abscisic acid (ABA) and gibberellin (GA) are considered as major players in the regulation of dormancy and germination; ABA regulates dormancy induction and maintenance positively while GA promotes seed germination. Therefore, changes in the balance of seed ABA/GA levels and sensitivity constitute a central regulatory mechanism underlying the maintenance and release of seed dormancy. Previous studies have indicated that change in the ABA/GA balance is regulated at least partly by the reciprocal regulation of the expression of genes involved in ABA and GA metabolism and signaling. Other endogenous signaling factors such as reactive oxygen species (ROS) and environmental factors such as temperature and light can also influence the balance between ABA and GA, and therefore dormancy and germination in cereal seeds.

3Recent progress in the genomics of cereal crops has led to the identification of genes involved in ABA and GA metabolism and signaling pathways, and those mediating ABA-GA interactions in cereal crops, and this has opened up new opportunities for elucidating the molecular mechanisms underlying the roles of ABA and GA in the regulation of dormancy and germination in cereal seeds. This review highlights the recent advances made in this regard.

4Abscisic acid is one of the major plant hormones involved in many aspects of plant growth and developmental processes including seed dormancy and germination. The level of ABA in plant tissues/seeds is regulated by its biosynthesis and catabolism. Of the several steps involved in the biosynthesis of ABA, oxidative cleavage of 9-cis-neoxanthin and violaxanthin by 9-cis-epoxycarotenoid dioxygenase (NCED) is reported to be the rate-limiting step while ABA catabolism mainly takes place through hydroxylation of ABA at the 8′ position by the action of ABA 8′-hydroxylase (ABA8′OH), which is encoded by CYP707A genes (Figure 1). Therefore, the expressions of NCED and CYP707A genes play significant roles in the control of seed ABA level, and therefore dormancy and germination.

5Seed development in dicot species such as Arabidopsis is characterized by two peaks of ABA accumulation that occur during the mid- and late-phases of seed maturation; ABA in the latter peak, which is mainly synthesized in the zygotic tissues, plays a key role in the induction and maintenance of seed dormancy. Similarly, two peaks of embryonic ABA level have been detected during wheat seed development. The first peak of ABA occurs at about 25 days after pollination (DAP) while the second peak occurs at about 35 DAP. However, the second ABA peak appears to occur for an extended duration, that is, up to 40 DAP in the seeds of dormant wheat line as compared to the non-dormant line, suggesting the involvement of ABA synthesized during the late phase of seed maturation for the establishment of seed dormancy. Furthermore, maintenance of elevated embryonic ABA level for prolonged duration during the late-maturation phase of wheat seed development has been reported to be associated with the higher level of dormancy while maturing seeds (at about 30 DAP) of a non-dormant mutant line of wheat have been shown to exhibit a significantly lower level of embryonic ABA than that observed in the dormant line from which the mutant is generated. In agreement with this, mutations in the two homolog of TaABA8′OH1 (TaABA8′OH1A and TaABA8′OH1D) that cause an increase in embryonic ABA content during the middle and later stages of seed development (40–60 DAA) have been shown to result in an enhanced degree of seed dormancy, reinforcing the significance of elevated embryonic ABA level during the maturation phase of seed development in the induction of dormancy in wheat seeds. Although these studies provided important insights into the role of ABA in dormancy induction in wheat seeds, detailed understanding of the molecular mechanisms underlying the regulation of ABA metabolism during seed maturation and therefore dormancy induction awaits further study.

6A study in rice seeds, however, implicated that the accumulation of ABA involved in the induction of dormancy occurs at the earlier stage of seed development; rice cultivars with deep dormancy exhibit higher seed ABA level during the early and middle stage of seed development (10–20 DAP) than that observed in cultivars with medium and low levels of dormancy. In addition, ABA accumulation during seed development in weedy red rice has been shown to peak at 10 DAP; however, seeds of dormant lines contain over twofold more ABA than that observed in non-dormant lines and this variation in seed ABA content appeared to be associated at least partly with the expression patterns of NCED1 paralogs. In barley, developing seeds of both dormant and non-dormant cultivars have been shown to exhibit a high amount of embryonic ABA through the physiological maturity phase after which embryonic ABA level declined substantially in the non-dormant but not in the dormant cultivar. Analysis of the expression patterns of ABA metabolic genes in developing barley seeds revealed that HvNCED2 regulates ABA level during the early- to mid-phases of seed maturation while HvABA8′OH1 (a barley homolog of CYP707A) is responsible for controlling seed ABA level thereafter. These results suggest the importance of ABA catabolism in controlling seed ABA level and dormancy induction in maturing barley seeds. Furthermore, seed development in a triticale cultivar that is less susceptible to preharvest sprouting has been shown to be characterized by higher TsNCED1 expression and ABA level than that observed in a cultivar that is more sensitive to preharvest sprouting, suggesting the role of ABA biosynthesis in the regulation of dormancy establishment in cereal seeds.

7Seed dormancy is partly determined by the level of ABA contained in mature seeds. Previous studies have shown that dormancy loss and germination of cereal seeds are associated with a decrease in seed ABA level during imbibition, and the change in seed ABA level appears to be related with the expression patterns of NCED and CYP707A genes. For example, after-ripening induces loss of seed dormancy in barley, and this is mediated by imbibition-induced reduction in seed ABA content to a level lower than that observed in the corresponding dormant seeds. This difference in ABA content and therefore level of dormancy is reported to be associated mainly with the expression pattern of HvABA8′OH1. Consistently, RNAi-mediated knock-down of HvABA8′OH1 leads to enhanced seed ABA level and dormancy. Studies in rice also indicated that the reduction of ABA level during imbibition of non-dormant seeds of rice is related mainly with increased expression of OsABA8ox (rice homologs of CYP707A) genes. These results suggest the significance of ABA catabolism in the regulation of ABA level and seed dormancy maintenance and release in the seeds of cereals such as rice and barley.

8Other studies in barley and Brachypodium have also demonstrated the importance of ABA biosynthesis and/or catabolism in the regulation of seed dormancy. For example, after-ripening of dormant Brachypodium seeds leads to a decrease in the expression of BdNCED1 along with a transient induction in the expression of BdABA8′OH1 (a Brachypodium homolog of CYP707A) during imbibition, resulting in a reduced ABA level and enhanced seed germination. Furthermore, imbibition of dormant seeds of barley under white light is reported to enhance the expression of HvNCED1 with no marked effect on that of HvABA8′OH1, leading to increased embryonic ABA content and inhibition of seed germination. White light has also been reported to promote dormancy in both dormant and non-dormant seeds of Brachypodium, although this effect does not appear to be closely associated with changes in ABA metabolism/seed ABA level. Exposure of partially after-ripened barley seeds to blue light has also been shown to induce the expression of HvNCED1 and repress that of HvABA8′OH1 in the embryo, resulting in an increase in embryonic ABA level and suppression of germination. Blue light also induces secondary dormancy in barley seeds, and this appears to be associated with an increase in embryonic ABA content, which is mediated by enhanced expression of HvNCED1 and HvNCED2, and decreased expression of HvABA8′OH1. Recent progress in the molecular aspects of ABA metabolism and dormancy regulation in wheat seeds is highlighted in the following section.

9Similar to that observed in the seeds of other cereal crops, after-ripening of dormant wheat seeds leads to imbibition-mediated reduction of ABA level, while maintenance of elevated ABA level was evident in the corresponding dormant seeds, and these differences in ABA level are mediated by changes in the expression patterns of TaNCED1 and TaABA8′OH1 (a wheat homolog of CYP707A) genes, implying the contribution of both ABA biosynthesis and catabolism in the regulation of seed ABA level and dormancy in wheat. Furthermore, seeds from a dormant wheat genotype have been shown to exhibit higher and lower expression of TaNCED2 and TaABA8′OH1, respectively, in both dry and imbibed states than those derived from a non-dormant genotype. Consistently, ectopic expression of TaNCED2A (a homeolog of TaNCED2 from the A genome of wheat) and TaABA8′OH1B (a homeolog of TaABA8′OH1 from the B genome of wheat) in Arabidopsis caused alteration of seed ABA level and dormancy, and a double mutation in the A and D genome copies of TaABA8′OH1 resulted in an increase in embryonic ABA level and a decrease in seed germination. Other treatments that lead to dormancy loss in wheat seeds also affect the expression patterns of ABA metabolic genes and ABA level. For example, dormancy loss due to imbibition of wheat seeds at lower temperature (15°C) decreases ABA level in the embryos via increased expression of TaABA8′OHs. Furthermore, after-ripening and cold stratification mediated dormancy loss in wheat seeds is reported to be associated with decreased ABA levels in the embryos and aleurone. Moreover, the effect of different seed imbibition temperature regimes on wheat seed germination is reported to be mediated by changes in the expressions of TaNCED and TaABA8′OH genes, and seed ABA level. For example, delay in the germination of wheat seeds due to imbibition under supraoptimal temperature (35°C) is associated with elevated embryonic ABA level, which is mediated via enhanced expression of TaNCEDs; whereas inhibition of germination by suboptimal temperature (4°C) appears to be caused by increased ABA level in both embryo and endosperm tissues, which is regulated by increased and decreased expression of TaNCEDs and TaABA8′OHs, respectively, in both tissues.

10ABA signaling involves three major core components; PYRABACTIN RESISTANCE1/PYRABACTIN-LIKE/REGULATORY COMPONENTS OF ABA RECEPTORS (PYR/PYL/RCAR), PROTEIN PHOSPHATASE 2Cs (PP2Cs; negative regulators), and SNF1-RELATED PROTEIN KINASE 2s (SnRK2s; positive regulators) (Figure 1). In the absence of ABA, PP2Cs inhibits the activities of SnRK2s through dephosphorylation of their kinase activation loop; however, when ABA is present, the ABA receptors PYR/PYL/RCAR form a complex with PP2C, and this inhibits the phosphatase activity of PP2C and thereby activate SnRK2. The activated form of SnRK2 subsequently turns on ABRE-binding protein/ABRE-binding factor (AREB/ABF) transcription factors, which in turn activates the transcription of ABA responsive genes. Among AREB/ABF transcription factors, ABA insensitive 5 (ABI5), a member of the basic leucine zipper transcription factor family, plays a central role in regulating ABA-responsive genes in seeds. In addition, ABI4 and ABI3, AP2-type and B3-type transcription factors, respectively, have been reported to function along with ABI5 to induce the expression of ABA responsive genes, and thereby regulate seed dormancy and germination (Figure 1).

11Dormancy maintenance in cereal seeds is also determined by seed sensitivity to ABA, which is regulated by the expression of genes involved in the ABA signaling pathway including those encoding the three central components (PYR/PYL/RCAR5, PP2C, and SnRK2) and the downstream transcription factors including ABI3, ABI4, and ABI5. Previous studies have demonstrated that mutants of ABI3, ABI4, and ABI5 exhibit ABA resistant germination phenotype, and these transcription factors appear to interact extensively and control the expression of ABA responsive genes that are involved in the regulation of seed dormancy/germination, including those involved in ABA catabolism such as CYP707A1 and CYP707A2, GA catabolism such as GA2ox3, and starch degradation such as α-amylase genes. One of the first key ABA signaling components identified and functionally characterized with respect to seed dormancy in cereals is the maize Viviparous1 (Vp1) gene, an ortholog of the ABI3 of Arabidopsis. Embryos of maize seeds that exhibit varying degree of resistance to preharvest sprouting have been reported to exhibit temporal difference in the expression of Vp1 during embryogenesis, suggesting its role in the control of dormancy. Consistently, mutations in Vp1 lead to disruption of embryo maturation and induction of its germination while still on the cob. On the other hand, ectopic expression of the maize Vp1 gene in wheat results in increased level of seed dormancy and tolerance to preharvest sprouting. It has been shown previously in pea that alternative splicing of the ABI3 homolog results in the formation of non-functional/truncated protein products from mis-spliced transcripts, and such an event has been observed in rice and wheat genotypes exhibiting early dormancy release. Furthermore, the level of dormancy in wheat seeds has been shown to be associated with the expression pattern of Vp1.

12Previous reports have also implicated other ABA signaling components in the regulation of dormancy and germination in cereal seeds. For example, seeds of rice plants overexpressing PYL/RCAR5 exhibit hypersensitivity to ABA and delayed germination phenotype. Moreover, immature seeds (30 DAP, before physiological maturity) from a dormant line of sorghum exhibit transcriptional induction of PKABA1 (SnRK2 ortholog), ABI3, ABI4, and ABI5, and enhanced expression of ABI5 protein during imbibition as compared to those derived from the less-dormant line. A recent transcriptomic analysis of maturing seeds from dormant and non-dormant genotypes of wheat revealed the enrichment of several ABRE motifs, which act as binding sites for ABI5, in the embryo and endosperm gene co-expression clusters of both genotypes, of which G-box-like motif is specifically enriched in both tissues of seeds derived from the dormant genotype, suggesting importance of ABI5 in the control dormancy establishment is mediated by specific ABRE motifs. Increased expression of TaABF1, a wheat ortholog of ABI5, has also been reported during imbibition of dormant wheat grains. On the other hand, dormancy release due to after-ripening in wheat and barley seeds is associated with transcriptional repression of SnRK2, ABI5, and ABI3-interacting protein2 (AIP2) during imbibition, suggesting a decrease in seed ABA sensitivity. A recent study has also elucidated the role of ABI4 in regulating ABA sensitivity and thereby dormancy and germination in Arabidopsis seed; however, the physiological role of this ABA signaling components has yet to be determined in cereal seeds.

13Environmental factors such as temperature also modulate the expression of ABA signaling genes and thereby ABA sensitivity of wheat seeds during imbibition. It has been shown recently that imbibition of non-dormant wheat seeds under supraoptimal temperature leads to delay in germination via inducing the expression of PYL5, SnRK2, ABI3, and ABI5 genes in the embryo tissue and thereby enhancing its sensitivity to ABA. Similarly, the inhibitory effect of suboptimal imbibition temperature on germination appears to be mediated by increased ABA sensitivity of both embryo and endosperm tissues through transcriptional activation of the ABA signaling genes; PYL5, SnRK2, ABI3, and ABI5 in the embryo, and SnRK2 and ABI5 in the endosperm.

14Gibberellin is the other major phytohormone with an important role in the regulation of seed dormancy and germination. The level of biologically active GAs in plant tissues is determined by the balance between its biosynthesis and inactivation. The biosynthesis of GA is regulated mainly by reactions catalyzed by GA 20-oxidase (GA20ox) and GA 3-oxidase (GA3ox) while its inactivation is controlled primarily by GA 2-oxidase (GA2ox) (Figure 2). Genes encoding these enzymes have been identified from several crop species including cereals such as rice, barley, and wheat, and their expression play important roles in regulating seed GA level, and therefore dormancy and germination.

15Several genetic and physiological analyses of the seeds of dicot species such as Arabidopsis and tomato have demonstrated the requirement of GA for germination; GA promotes germination through enhancing the growth potential of the embryo and overcoming the mechanical barriers imposed by covering layers surrounding embryo. With respect to cereals, reports that implicate GA in the control of seed dormancy and germination are mainly based on comparative analysis of dormant and non-dormant seeds. For example, dormancy loss in wheat and barley seeds due to after-ripening has been shown to be associated with enhanced expression of the TaGA20ox and TaGA3ox genes and increased level of bioactive GA1 during imbibition. Consistently, comparative genomic analysis among barley, wheat, and rice identified HvGA20ox as a candidate gene regulating a seed dormancy QTL in barley. Likewise, the expression of the GA biosynthetic genes (GA20ox and GA3ox2) is induced while that of GA inactivating genes (GA2ox) is repressed during imbibition of non-dormant rice and sorghum seeds, and this has been shown to be associated with increased level of bioactive GA. Recent genetic studies in rice have identified OsGA20ox2 and OsGA2ox3 as candidate genes for controlling seed germination, and loss of function mutation in OsGA20ox2 leads to reduced seed GA level and enhanced dormancy.

16Exogenous factors that are implicated in the regulation of dormancy in cereal seeds such as temperature can also induce changes in the expression patterns of GA metabolic genes. For example, dormancy decay in wheat seeds due to imbibition at lower than optimal temperature (15°C) is related with enhanced expression of TaGA3ox2 and thereby increased level of bioactive GA in the embryo while inhibition of germination due to imbibition of non-dormant wheat seeds at suboptimal temperature (4°C) is related with decreased expression of TaGA20oxs and TaGA3ox2, and reduced bioactive GA level in both embryo and endosperm tissues. However, further genetic analyses are required for detailed understanding of the physiological roles of GA metabolic genes in the regulation of seed dormancy in cereals.

17Gibberellin signaling in plants is triggered when bioactive GA is perceived by its receptor GIBBERELLIN INSENSITIVE DWARF1 (GID1) (Figure 2). The prevalence of GA responses such as seed germination requires GA induced degradation of DELLA protein, which acts as a negative regulator of GA signaling. The binding of GA to GID1 promotes the formation of GA-GID1-DELLA complex, which in turn associates with F-box protein, the central component of SCFSLY 1/GID2 E3 ubiquitin ligase, leading to DELLA degradation via the ubiquitin-26S proteasome pathway. The degradation of DELLA by GA activates GAMYB, a downstream GA signaling component that mediates GA signaling effects. The function of GAMYB in cereal aleurone cells has been reported to be repressed by another downstream GA signaling component designated as KINASE ASSOCIATED WITH GAMYB1 (KGM1).

18Seed dormancy or germination in cereals such as wheat is also reported to be associated with changes in seed sensitivity to GA, which is influenced by the expression of genes encoding the GA signaling components. The gene encoding GID1 was first identified from rice and later in other cereals such as barley and wheat. Genetic analysis of rice mutant lines showed that GA responses are mediated by GID1 in the nucleus of aleurone cells and there is no alternative GA receptor in the rice aleurone. However, mutation in GID1 of rice does not appear to affect seed germination although it causes repression of the activity of α-amylase. Furthermore, the expression pattern of GID1 is found not to be associated with the dormancy or germination phenotype of wheat and barley seeds. Studies in rice and wheat have shown that GID2 is a part of SCF complex and positively regulates the GA response; however, mutation in GID2 of rice leads to repression of the α-amylase activity with no any effect on seed germination. Similar to that observed for GID1, the expression of GID2 is not associated with the seed germination phenotype. These results overall suggest that GA signaling in the seeds of cereals such as wheat, barley, and rice can operate independent of GID1 and GID2 levels; however, more studies are required to validate these observations.

19Cereals appear to have a single or fewer DELLA proteins that are reported to be highly conserved including SLENDER RICE1 (SLR1) of rice, SLENDER1 (SLN1) of barley, REDUCED HEIGHT (RHT) of wheat, and D8 and D9 of maize. Overexpression of SLN1 leads to repression of GA induced α-amylase expression in barley seeds, and in agreement with this, the SLN mutant of barley is characterized by non-dormant seeds with high amylase activity in the aleurone. A recent report in wheat showed that inhibition of the germination of non-dormant wheat seeds due to imbibition at suboptimal and supraoptimal temperatures is associated with increased expression of RHT1, suggesting the role of GA signaling or seed GA sensitivity in the induction of dormancy. Another evidence for the role of RHT1 in seed dormancy and germination comes from the identification of RHT1 alleles that are able to produce different levels of seed dormancy. In contrast, no differential expression of RHT was observed during imbibition of dormant and after-ripened seeds of wheat; however, this discrepancy could be due to the fact that the whole seed tissue instead seed embryo was analyzed in this particular study.

20The degradation of DELLA (SLN/SLR) by GA activates GAMYB, which in turn induces the transcription of α-amylase in the aleurone of barley and rice seeds via binding to the GA-responsive elements (GARE) present in its promoter. Furthermore, GAMYB has been shown to interact synergistically with other transcription factors such as DNA binding with one finger (DOF) proteins and regulate the expression of α-amylase in barley. On the other hand, GAMYB regulates other transcription factors such as GATA type transcription factors that act as positive regulators of seed dormancy, and transcription factors such as KGM regulates GAMYB negatively and thereby lead to repression of genes encoding hydrolases in the aleurone. Despite their reported functionalities, no differential expression of GAMYB and KGM1 was evident between dormant and after ripened/non-dormant seeds of wheat. The induction in the expression of hydrolases during imbibition of after-ripened wheat seeds irrespective of the absence of differential expression of GAMYB and KGM between the dormant and after-ripened seed samples might suggest that GA signaling in cereal seeds is not dependent on the level of the two transcriptional regulators. Functional analysis of GAMYB with respect to dormancy, and identification and characterization of other molecular features that regulate or interact with GAMYB are crucial to enhance our understanding of the role of downstream GA signaling elements in the control of seed dormancy and germination in cereals.

21Several studies have indicated that the dynamic balance between ABA and GA metabolism and thereby the developmental switch between dormancy and germination can be modulated by their reciprocal regulation. It has been shown previously that vivipary phenotype in maize kernels due to ABA deficiency can be reversed through inhibition of GA synthesis, and this demonstrates the role of GA in antagonizing the action of ABA and thereby seed transition from dormancy to germination. Changes in the balance between ABA and GA levels, which modulate seed dormancy status, are associated with alterations in the expression patterns of their metabolic genes; for example, imbibition of non-dormant barley seeds induces the expression of ABA catabolic gene HvABA8′OH1 and GA biosynthetic gene HvGA3ox2, which leads to reduced ABA and increased GA levels. Furthermore, imbibition of non-dormant wheat seeds has been shown to lead to transcriptional induction of TaGA3ox2 and HvABA8′OH1 genes. Further genetic studies such as mutational and gain of function studies are required to precisely elucidate the antagonistic relationship between ABA and GA metabolic pathways in regulating the switch of cereal seeds between dormancy and germination.

22In Arabidopsis, a PP2C protein, HONSU, which acts as a negative regulator of ABA signaling, modulates the expression of GA metabolism and signaling genes and thereby enhance the transition of seeds from dormant to germinating state. In cereals such as rice, PP2C protein represses OsbZIP10 (ABI5 homolog of rice) via dephosphorylation and thereby promote seed germination. Consistently, overexpression of OsPP2C51 leads to increased expression of α-amylase and activity of the corresponding enzyme. Since SbABI4 and SbABI5 from sorghum have been shown to interact with SbGA2ox promoter in vitro, the transcriptional repression of OsbZIP10 (ABI5) by OsPP2C51 may imply decreased GA inactivation that leads to an increase in bioactive GA level and enhanced dormancy loss and germination. Furthermore, the expression of HvPP2C in the aleurone of barley appears to be differentially regulated by GA and ABA. All these results underline the significance of PP2C in mediating ABA and GA responses, thereby modulating the equilibrium between germination and dormancy; however, more studies are required to further elucidate this role of PP2C.

23A recent study has also shown that Tiller Enhancer (TE) of rice, which acts as an activator of the APC/CTE E3 ubiquitin ligase complex, mediates the balance between ABA and GA signaling and thereby the developmental switch of seeds between dormancy and germination. The interaction of TE with the ABA receptor OsPYLs/RCARs enhances proteasome mediated degradation of the receptor. However, ABA mediated activation of SnRK2s, which induces the phosphorylation of TE, ultimately represses the TE-OsPYLs/RCARs interaction and thereby stabilizes OsPYLs/RCARs, leading to increased seed sensitivity to ABA and enhanced dormancy. In contrast, GA enhances TE-OsPYLs/RCARs interaction and thereby the degradation of OsPYLs/RCARs through repression of the activity of SnRK2s, and this leads to decreased seed sensitivity to ABA and enhanced germination. Furthermore, a rice AP2-domain containing transcription factor, designated as OsAP2-39, regulates a switch between seed dormancy and germination through modulating the balance between ABA and GA levels via modulating the expression levels of OsNCED1 and Elongation of Uppermost Internode (EUI) genes. Studies in Arabidopsis have also shown that ABI4 regulates the equilibrium between seed dormancy and germination through modulating the balance between ABA and GA levels. For example, dry seeds of the abi4 mutant of Arabidopsis contain lower and higher levels of ABA and GA, respectively, as compared to that of the wild-type. Consistently, ABI4 has been shown to enhance the expression of ABA biosynthetic (NCED6) and GA catabolic (GA2ox7) genes, although in a post-germination stage, while repressing the expression of ABA catabolic (CYP707A1 and CYP707A2) genes. However, further studies are needed to determine if a similar mechanism underlies the role of ABI4 in regulating seed dormancy and germination in cereals seeds.

24It has been shown that the DELLA proteins of Arabidopsis act as regulators of GA and ABA crosstalk and therefore the balance between dormancy and germination via its interaction with ABI3 and ABI5. Furthermore, NUCLEAR FACTOR-YC (NF-YC) modulates GA and ABA signaling via the NF-YC–DELLA (RGL2)–ABI5 cascade independent of ABA; the NF-YCs binds to RGL2, which in turn regulates ABI5, a downstream component of ABA signaling, via specific CCAAT elements that are also shown to be present in the promoter of GA inducible GAMYB. The role of DELLA in mediating the balance between GA and ABA responses and in turn dormancy and germination can take place through its interaction with XERICO, a RING-H2 zinc finger E3 ubiquitin ligase that acts as important regulator of ABA signaling (Figure 3). When GA level is low, DELLA activates the expression of XERICO, which in turn enhances ABA accumulation and activates the transcription of ABI5, leading to dormancy maintenance/inhibition of seed germination. Consistently, overexpression of XERICO in rice results in increased ABA level and response via enhancing the expression of OsNCED1 and OsABI5, respectively, causing a delay in germination. Its overexpression in maize also leads to ABA accumulation via modulating the expression of ZmCYP707A rather than that of the ZmNCED genes as observed in rice. However, detailed understanding of the role of XERICO in regulating the balance between ABA and GA response, and in turn seed transition between dormancy and germination awaits further study. It is well established that the germination of cereal seeds is characterized by transcriptional induction of hydrolytic enzymes such as α-amylase, which are required for the degradation of starch and its subsequent mobilization to the expanding embryo. The expression of α-amylase in the aleurone of barley seeds can be activated by the GA inducible GAMYB but repressed by ABA induced PKABA1 (Ser-Thr kinase), which binds to GAMYB and represses its transcription. However, RNAi mediated suppression of PKABA1 in barley does not affect ABA mediated repression of α-amylase in the seeds, suggesting the presence of PKABA1-independent ABA signaling pathway. Indeed, a study in rice has shown that ABA mediated inhibition of GA inducible responses such as the expression of α-amylase can take place via an alternative pathway that involves WRKY transcription factors (Figure 3).

25Previous studies have also identified other genetic/molecular elements that are implicated in the regulation of seed dormancy and germination in cereals such as MOTHER OF FT AND TFL1 (MFT) and DELAY OF GERMINATION 1 (DOG1). Studies with the model plant Arabidopsis have demonstrated that MFT enhances seed transition from the state of dormancy to germination via feedback transcriptional repression of ABI5 and ABA signaling. MFT also mediates ABA and GA responses, and this appears to involve the ABA signaling components ABI3 and ABI5 that act as repressor and activator of MFT expression, respectively, and the GA signaling component DELLA, which acts as transcriptional activator of MFT (Figure 3). Recent reports have shown that DOG1 enhances ABA signaling and thereby seed dormancy through its interaction with PP2C and presumably by modulating the expression of ABI5 and genetically interacting with ABI3, implying that the action of DOG1 in regulating seed dormancy is coordinated with ABA. Mutational analysis of DOG1, furthermore, revealed that its role in dormancy maintenance is mediated at least partly by modulation of GA metabolism via altering the expressions of GA biosynthetic and inactivation genes in a temperature dependent manner (Figure 3). However, it is yet unclear if the role of MFT and DOG1 in the regulation of the developmental switch of cereal seeds between dormancy and germination is mediated by their interference with the balance between ABA and GA metabolism and signaling.

26Seed imbibition environmental conditions such as temperature and light can also modulate the balance between seed dormancy and germination through altering the metabolic and signaling equilibrium between ABA and GA. Recent reports in wheat have demonstrated the role of imbibition temperature in regulating the balance of ABA/GA ratio and thereby seed transition between dormancy and germination. Imbibition of dormant seeds at lower temperature (15°C) induces germination through enhancing the expression of ABA catabolic (TaABA8′OH1 and TaABA8′OH2) and GA biosynthesis (TaGA3ox2) genes that lead to a decrease in embryo ABA level while increasing that of GA. However, delay in germination as a result of seed imbibition at supraoptimal temperature (35°C) is mediated mainly by enhanced expression of ABA biosynthesis genes (TaNCED1 and TaNCED2) that leads to increased ABA content in the embryo, and this ABA is also suggested to interfere with GA effects. Similarly, induction of dormancy/inhibition of germination as a result of imbibition at suboptimal temperature (4°C) appeared to be associated with increased expression of the NCED genes in both embryo and endosperm tissues and decreased expression of CYP707A genes in the endosperm, which ultimately led to increased seed ABA level. This effect of suboptimal temperature has been shown to be accompanied by repression of GA biosynthetic genes and GA levels in both embryo and endosperm tissues. The dynamic balance between ABA and GA signaling in regulating the switch of seeds between dormancy and germination can also be influenced by temperature. For example, the transition of wheat seeds from non-dormant/germinating to dormant state under supraoptimal imbibition temperature has been shown to be mediated by enhanced expression of embryonic genes that positively and negatively regulate ABA and GA signaling, respectively, leading to alteration of the balance between seed sensitivity to ABA and GA. In addition, seed imbibition at suboptimal temperature induces the expression of genes that regulate ABA signaling positively in both embryo and endosperm tissues, and this effect was accompanied by transcriptional activation of genes that negatively regulate GA signaling in the embryo.

27Previous studies with the seeds of dicot species such as Arabidopsis have shown that red and far-red lights regulate dormancy and germination by altering the ABA/GA balance. The roles of these two lights in modulating the balance between ABA and GA metabolisms and therefore the transition of seeds between dormant and germinating states have also been investigated in monocot species. For example, the transition from dormant to germinating state of Brachypodium and photoblastic weedy rice seeds appeared to be promoted by red light but repressed by far-red light, and these effects of the two lights in weedy rice seeds have been shown to be associated with changes in ABA and GA levels. Contrary to these observations, red and far-red lights are reported not to have an effect on the expression of ABA biosynthetic genes, the level of ABA and germination in barley seeds. In addition to the two light qualities, previous studies investigated the roles of white and blue lights in regulation of seed dormancy and germination in cereals seeds. White and blue light are reported to inhibit the germination of barley and wheat seeds through increasing ABA content, and this appears to be mediated by transcriptional activation of the ABA biosynthetic NCED genes and repression of the ABA catabolic ABA8′OH1 gene in the embryo. Furthermore, the inhibitory effect of blue light but not that of white light on the germination of barley and rice seeds is associated with transcriptional repressions of GA biosynthetic gene and activation of GA inactivation genes. Consistently, knocking-down of a rice gene encoding cryptochrome 1 (CRY1), which is a blue/ultraviolet-A photoreceptor, induces the expression of the GA inactivation OsGA2ox genes. However, further mutational and genetic studies are required for detailed elucidation of the molecular mechanisms underlying the role of temperature and light in modulating ABA/GA balance and thereby developmental switch of seeds between dormancy and germination.

28Antagonistic interaction between ABA and GA and thereby the transition of seeds between dormancy and germination can also be mediated by ROS including hydrogen peroxide (H2O2), superoxide anion (O2-), and hydroxyl radical (OH-). The role of ROS in alleviating seed dormancy in cereals such as barley has been reported to be mediated mainly by the modulation of GA metabolism with almost no effect on ABA metabolism. Consistently, ABA induced reduction of ROS production in rice seeds appeared to repress GA accumulation via repression of specific OsGA20ox and OsGA3ox genes, and thereby seed germination. Comparative analysis of dormant and non-dormant seeds revealed that the germination of non-dormant wheat and barley seeds is associated with the production of more ROS during imbibition, which in turn enhance the expression of ABA catabolic gene (HvABA8′OH1) and thereby reduce ABA level. In agreement with these results, inhibition of the germination of non-dormant barley seeds through repression of ROS production has been shown to decrease embryonic GA level via repression of the expression of TaGA20ox1 and TaGA3ox1 genes, and increase ABA level via decreased expression of HvABA8′OH1. Furthermore, GA induced promotion of H2O2 production in barley aleurone enhances the expression of α-amylase via activating the transcription of GAMYB and repressing the expression and activity of ABA inducible PKABA. Despite these reports, the molecular bases underlying ROS mediated alteration of ABA/GA balance and the equilibrium between dormancy and germination in cereal seeds are still elusive.

29To date, considerable progress has been made in the dissection of molecular mechanisms underlying the control of ABA/GA balance and thereby seed transition between dormancy and germination in dicot species such as the model plant Arabidopsis. However, this phenomenon is still poorly understood in cereal seeds, and this emphasizes the need for further studies to determine if the molecular mechanisms identified in the seeds of dicot species are conserved in cereal seeds and identify novel mechanisms that are specific to cereal seeds. Although a limited number of molecular elements have been reported as regulators of ABA/GA interplay in cereal seeds, these elements are identified mainly based on comparative analysis of seeds from dormant and non-dormant lines or in vitro assays. Therefore, further genetic studies such as mutational and gain-of-function analyses are necessary to precisely pinpoint their physiological functions. Several studies have also provided important insights into the roles of other plant hormones, and genetic and epigenetic mechanisms in the control of dormancy and germination in cereal seeds. It is therefore interesting to explore if these factors influence dormancy status in cereal seeds through modulation of the ABA/GA balance. In recent years, there have been significant advances in the availability of genomic resources of cereal crops, and these resources are providing important platforms for the identification of molecular elements regulating ABA/GA balance in cereal seeds and elucidation of their roles in controlling seed transition between dormancy and germination. It is well established that preharvest sprouting, which causes substantial yield and quality losses in cereal crops, is closely associated with the level of dormancy manifested in the seeds. Therefore, a detailed understanding of molecular mechanisms underlying the regulation of ABA/GA balance and thereby dormancy and germination in cereal seeds will have a significant contribution in developing molecular/genomic tools that can enhance the breeding of cultivars with improved preharvest sprouting tolerance, and in turn lead to increased yield and quality of cereal crops.

30BA conceived the topic and organized the manuscript. PAT, RK, and BA wrote and prepared the manuscript. PR and PKT were involved in the collection of literature and writing of Sections “ABA Signaling” and “Gibberellin Metabolism” of the manuscript.

31The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.