The role of the secondary cell wall in plant resistance to pathogens

1In their natural environments, plants are under continuous threat of biotic stresses caused by pathogenic bacteria, fungi, viruses, and oomycetes, that compromise plant survival and reproduction. Given that green plants are the ultimate source of energy for most other organisms, it is not surprising that plants have evolved a plethora of resistance mechanisms which are either constitutively present or induced after pathogen attack. An important defense element common to all plants is the cell wall.

2All the plant cells that are in developmental expansion have a constantly remodeled primary cell wall that mainly consists of carbohydrate-based polymers (classified as cellulose, hemicelluloses and pectins) and hydroxyproline-rich O-glycoproteins, such as extensins and arabinogalactan proteins (AGPs; ). In addition, those cells that have completed their cellular expansion and need to reinforce their structure for functional reasons (e.g., to form vessel or fiber cells) generate a secondary cell wall that is mainly composed of cellulose, hemicelluloses (mostly xylans) and lignin. Besides having multiple essential functions during plant development, plant cell walls also play important roles in preventing pathogen invasion. First, cell walls act as a passive barrier; local or extensive breakdown of the wall matrix is typically required for the progression of pathogen infection. Second, the cell wall is a reservoir of antimicrobial compounds, which are released during cell wall degradation. Moreover, plants have a dedicated cell wall integrity (CWI) maintenance mechanism similar to that existing in fungi, which initiates responses to regulate CWI during plant development and in response to external stimuli. Impairment of CWI by pathogen attack or wounding results in the release of plant signaling molecules, the so-called Damage-Associated Molecular Patterns (DAMPs;; ). DAMPs can modulate plant innate immune responses upon recognition by plant Pattern Recognition Receptors (PRRs), through molecular mechanisms that are similar to those regulating the activation of immune responses by Pathogen-Associated Molecular Patterns (PAMPs) derived from microbial pathogens (reviewed by;; ). The recognition of DAMPs and PAMPs by PRRs activates protein kinase cascades, which regulate downstream immune responses that can lead, among others, to cell-wall reinforcement. Notably, in addition to its role in protecting plants against infection, the plant cell wall can also act as a source of nutrients from the pathogen point of view, thereby promoting pathogen growth and development.

3Cell walls are also considered as a valuable feedstock for the production of second generation biofuels and bio-based chemicals. These so-called lignocellulosic feedstocks can either derive from agricultural and industrial practices, such as maize stover, straw and sugarcane bagasse, or from dedicated crops, such as fast growing grasses and trees, grown for the purpose of generating large volumes of lignocellulosic biomass. In both cases, engineering cell wall composition is a promising strategy to ease lignocellulosic biomass conversion toward fuels and chemicals in industrial processes. Importantly, the changes in cell-wall composition needed for industrial biomass processing should not conflict with the principal biological roles of the cell wall as a supportive and protective structure. Indeed, some cell wall modifications result in negative repercussions on biomass yield. A better understanding of the processes underlying the yield-penalty in plants with modified cell walls has led to successful engineering strategies to recover the biomass yield, while maintaining the anticipated cell wall modifications. Likewise, cell wall modifications should not have negative repercussions on crop susceptibility toward pathogens. Clearly, a better understanding of the processes underlying the interactions between pathogens and the cell wall will support the development of plants with optimized lignocellulosic characteristics, without negatively affecting disease resistance.

4A relatively large number of studies have described the influence of plant cell-wall modifications on pathogen infection. Contra-intuitively, “weakening” the cell wall by knocking out essential genes involved in cell-wall biosynthesis sometimes leads to enhanced resistance toward specific pathogens. In this review, we summarize the consequences of secondary cell-wall modifications on pathogenic infection and link them with our current knowledge on the role of the cell wall in plant resistance to pathogens. Because lignin is both stress-induced and developmentally deposited in the secondary thickened cell wall and because it is a major target for lignocellulosic biomass engineering, we have put special emphasis on the effect of altering lignin amount and composition on pathogen infection and spread.

5The contribution of the secondary cell wall to plant immunity has been mainly demonstrated through the characterization of plant mutants impaired in secondary wall composition. For instance, the resistance of a set of Arabidopsis thaliana (Arabidopsis herein) mutants defective in cellulose synthase (CESA) subunits required for secondary cell wall formation (i.e., CESA4, CESA7, and CESA8) toward a series of pathogens has been tested. These mutants make less cellulose, which results in collapsed xylem vessels, and therefore they are called irregular xylem mutants (irx5, irx3, and irx1, respectively). These mutants showed enhanced resistance to different pathogens, including the necrotrophic fungi Plectosphaerella cucumerina and Botrytis cinerea, the vascular bacterium Ralstonia solanacearum, and the biotrophic bacterium Pseudomonas syringae (Table 1; ). In line with these results, an Arabidopsis mutant defective in the MYB46 transcription factor that directly regulates the expression of genes required for secondary cell wall formation, including lignin and cellulose biosynthesis (among which CESA4, CESA7, and CESA8), also showed enhanced resistance to necrotrophic fungi. The disease resistance phenotype of irx1, irx3, irx5, and myb46 mutants was in part explained by the constitutive activation of plant immune responses rather than by alterations of the passive wall barrier. In these mutants, the abscisic acid signaling pathway was constitutively active and antimicrobial peptides and tryptophan-derived metabolites accumulated to a higher extent than in wild-type plants. Plant resistance to pathogens is also altered in Arabidopsis mutants affected in CESAs subunits required for cellulose biosynthesis of the primary cell wall, such as the CESA3 defective isoxaben resistant (ixr1)/constitutive expression of VSP (cev1) mutants. The ixr1/cev1 mutant alleles are more resistant than wild-type plants to B. cinerea, P. syringae, and Erysiphe cichoracearum, whereas their resistance to R. solanacearum and P. cucumerina does not differ from that of wild-type plants, which contrasts with the resistance phenotype of the secondary cell wall cellulose mutants, irx1, irx3 and irx5. In ixr1/cev1 plants, the ethylene and jasmonic acid, but not the abscisic acid signaling pathway, are constitutively activated. These results with Arabidopsis cesA mutants illustrate that specific immune responses can be activated by alteration of the CWI of either the primary or the secondary wall.

6A severe reduction in secondary wall thickness of fibers, but not that of xylem vessels, as it occurs in the Arabidopsis WALLS ARE THIN 1 (wat1) mutant, also increased resistance to vascular plant pathogens, such as the bacteria R. solanacearum and Xanthomonas campestris pv. campestris, the fungi Verticillium dahliae and Verticillium alboatrum, and the necrotrophic fungus P. cucumerina. WAT1 encodes a tonoplast localized indole acetic acid (auxin) transporter. Auxin content was found to be lower in roots, but not in leaves of the wat1 mutant than in those of wild-type plants. In contrast, salicylic acid content was higher in the roots of the wat1 mutant than in those of wild-type plants. Introduction in wat1 plants of NahG, the bacterial gene coding for a salicylic acid-degrading hydroxylase, restored full susceptibility to the bacteria. These data and those obtained by comparative transcriptomic analyses of wat1 and wild-type plants suggest that wat1-mediated resistance is again not caused by altering the strength of the wall as a passive barrier, but that it is dependent on the activation of immune responses, mainly localized in the vascular system, which are partially dependent on the salicylic acid pathway. This defense response has been described as “vascular immunity”.

7Alteration of glucoronoxylans and xyloglucans or modifications in the content of wall xylose, which is the major sugar component of these polysaccharides, also impacts resistance to pathogens in Arabidopsis. For example, plants with enhanced levels of wall-bound xylose, as it occurs in the de-etiolated3 (det3) and irx6 mutants or with alterations in the structure of xyloglucan, as in the xyl1-2 mutant, show an enhanced resistance to the necrotrophic fungus P. cucumerina (; Table 1). In contrast, impairment of the ERECTA (ER) gene encoding a PRR resulted in a reduced content of xylose besides other cell wall alterations in Arabidopsis. The er mutant was found to be more susceptible than wild-type plants to several pathogens, such as the necrotrophic fungus P. cucumerina, the vascular bacterium R. solanacearum and the vascular oomycete Pythium irregulare (Table 1;;; ). The enhanced susceptibility to P. cucumerina and the cell wall features of the er mutant, including its reduced xylose content, were restored to wild-type levels by mutations in SUPPRESSOR OF ERECTA 1 and 2 (SER1 and SER2), further suggesting a link between cell wall xylose content and resistance to pathogens. Although several defense genes are constitutively up-regulated in the ser1 and ser2 mutants, the precise molecular basis of their resistance has not yet been fully elucidated and the SER genes have not been characterized yet. Arabidopsis mutants in the Gβ and Gγ1/γ2 subunits of the heterotrimeric G protein (i.e., agb1 single and agg1 agg2 double mutants, respectively) also have a reduced content of xylose in their cell walls and are hypersusceptible to the necrotrophic fungi P. cucumerina and Alternaria brassicicola, the biotrophic bacterium P. syringae and the vascular fungus Fusarium oxysporum (Table 1;;;;;;; ). Interestingly, the reduced resistance of agb1 single and agg1 agg2 double mutants was found to be independent of defense pathways required for resistance to these pathogens, such as those regulated by abscisic acid, salicylic acid, jasmonic acid and ethylene, and those that regulate the biosynthesis of tryptophan-derived metabolites. It has been suggested that the reduced resistance in the agb1 and agg1 agg2 mutants is rather the direct consequence of a weakened cell-wall and a defective production of reactive oxygen species (ROS) upon pathogen infection. Together, these data suggest that shifts in the xylose content of the cell wall, e.g., by altering the glucoronoxylan and xyloglucan content, are responsible, at least in part, for the altered susceptibility of some Arabidopsis secondary cell wall mutants to pathogens.

8Cell wall polysaccharides such as xylan, (gluco)mannan and xyloglucan can be acetylated. Four Reduced Wall Acetylation genes (RWA1–RWA4) are involved in the acetylation of xylan during secondary wall biosynthesis. The expression of these genes is regulated by SND1, a transcriptional master switch of secondary wall biosynthesis. Remarkably, the Arabidopsis rwa2 mutant, that has ∼20% lower levels of polysaccharide O-acetylation but no obvious alteration in growth and development, is more resistant than wild-type plants to the necrotrophic fungus B. cinerea. The relevance of the degree of xylan acetylation in plant resistance to pathogens is further supported by the enhanced resistance to the necrotrophic fungi B. cinera and Bipolaris sorkiniana of transgenic Arabidopsis and Brachypodium distachyon, respectively, that have a reduced xylan acetylation due to overexpression of a xylan acetylesterase from Aspergillus nidulans (AnAXE; Table 1; ). These data indicate that the degree of acetylation of specific secondary cell wall polymers might be a determinant of susceptibility to particular pathogens. In addition to RWA proteins, members of the trichome birefringence (TBR) and TBR-like (TBL) protein families are also involved in the O-acetylation of wall polysaccharides. The Arabidopsis powdery mildew resistant5 (pmr5) mutant, impaired in a TBL member, has a decrease in cell-wall esterification as demonstrated by Fourier transform infrared (FTIR) analysis, but it has yet to be demonstrated whether pmr5 cell walls have an altered polysaccharide O-acetylation. The pmr5 mutant is more resistant than wild-type plants to powdery mildew fungi (i.e., E. cichoracearum and E. orontii), whereas its resistance to the bacterium P. syringae or the oomycete Peronospora parasitica (re-named Hyaloperonospora arabidopsidis) was similar to that of wild-type plants. Taken together, these data indicate that a decrease in cell wall acetylation in Arabidopsis resulted in an enhanced resistance to several fungi, but the molecular mechanisms explaining this resistance phenotype have yet to be elucidated.

9Primary cell wall remodeling can also impact pathogen resistance, as exemplified by the enhanced resistance to some pathogens of mutants defective in the CESA subunits required for primary cell wall cellulose biosynthesis (i.e., ixr1/cev1;; ). Similarly, modification of the biosynthesis and/or structure (e.g., degree of methylesterification or acetylation) of wall pectins can affect pathogen resistance. The complex contribution of pectin amount/structure to the regulation of plant innate immunity has been nicely reviewed in several recent publications that also describe the different virulence mechanism used by pathogens to modify or degrade pectins in order to favor plant colonization.

10Lignin is an aromatic polymer that is mainly deposited in secondary thickened cell walls where it provides strength and imperviousness. In monocot and dicot plants, lignin is mainly made from the monolignols coniferyl and sinapyl alcohol that give rise to the guaiacyl (G) and syringyl (S) units in the lignin polymer, respectively. p-Coumaryl alcohol, that gives rise to the p-hydroxyphenyl (H) units in the lignin polymer, is a minor monolignol that is slightly more abundant in monocot than in dicot cell walls. Lignin of gymnosperms is typically composed of G units and low levels of H units, but lacks S units. In several plant species, the traditional monomers are incorporated into the lignin in acylated forms. For instance, kenaf lignin is rich in sinapyl acetate-derived units, lignin of grasses has a high content of sinapyl p-coumarate-derived lignin units and poplar lignin incorporates sinapyl p-hydroxybenzoate. In addition, plants do accept a range of other phenolics as lignin monomers. For example, lignin in wheat straw has relatively high levels of the flavonoid tricin, whereas phenylpropanoid aldehydes and acids are found in the lignin of a range of wild-type and genetically engineered plants.

11The lignin biosynthetic pathway is relatively well described in many species including Arabidopsis, tobacco, alfalfa and poplar, and is generally divided in two branches: (i) the general phenylpropanoid pathway from Phe to feruloyl-CoA and (ii) the monolignol-specific pathway from feruloyl-CoA to the monolignols (Figure 1). At least eleven enzymes are involved in the biosynthesis of the monolignols from Phe: phenylalanine ammonia-lyase (PAL), cinnamate 4-hydroxylase (C4H), 4-coumarate:CoA ligase (4CL), hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (HCT), p-coumarate 3-hydroxylase (C3H), caffeoyl shikimate esterase (CSE), caffeoyl-CoA O-methyltransferase (CCoAOMT), cinnamoyl-CoA reductase (CCR), ferulate 5-hydroxylase (F5H), caffeic acid O-methyltransferase (COMT), and cinnamyl alcohol dehydrogenase (CAD; Figure 1;;;, ). After their biosynthesis, the monolignols are transported to the cell wall where they are oxidized by laccases and/or peroxidases to monolignol radicals. Subsequently, these monolignol radicals couple in a combinatorial fashion with the formation of various types of chemical bonds of which the ether (8-O-4), resinol (8–8), and coumaran (8–5) bonds are the most prominent ones.

12The biosynthesis and deposition of lignin in secondary cell walls is developmentally programmed and it is generally accepted that lignin provides a physical barrier against initial pathogen colonization. In addition, lignin or lignin-like phenolic polymers are synthesized and rapidly deposited in cell walls in response to biotic and abiotic stresses and to cell wall structure perturbations. The deposition of lignin in infected cells may prevent the spread of toxins and enzymes of the pathogen into the host and at the same time also the transfer of water and nutrients from the host cells to the pathogen. Both biotic and abiotic stresses have been shown to induce the expression of genes of the phenylpropanoid pathway in different tissues and cell cultures of several plants species, resulting in the enhanced accumulation of the corresponding enzymes, increased enzymatic activities and wall lignification. For example, in Chinese cabbage (Brassica rapa L. ssp. pekinensis) infected with the necrotrophic bacterium Erwinia carotovora subsp. carotovora, transcriptomic analyses revealed that 12 genes putatively encoding enzymes involved in lignin biosynthesis were up-regulated, and in Camelina sativa the expression of CsCCR2 was induced after inoculation with the necrotrophic fungus Sclerotinia sclerotiorum. In cell suspension cultures of Linum usitatissimum treated with different fungal PAMPs, the expression of genes encoding PAL, CCR, and CAD was elevated, PAL activity was enhanced and monolignol-derived compounds accumulated. Similarly, in suspension cultured cells of a blast-resistant rice genotype (Oryza sativa L. cv. Gigante Vercelli) treated with cell wall hydrolysates from the fungal pathogen Magnaporthe oryzae, up-regulation of PAL genes was observed. Also in wheat lignification acts as a defense response against pathogens: for example, S-rich lignin was found to accumulate during the hypersensitive reaction of wheat to Puccinia graminis infection, and S lignin was made in wheat sheath epidermal cells infected with F. proliferatum. In contrast, no changes in the lignin content occurred in wheat leaves infected with Wheat Streak Mosaic Virus.

13In addition to its function in the biosynthesis of lignin, the phenylpropanoid pathway is required for the synthesis of numerous other phenolic compounds, such as stilbenes, coumarins, (neo-)lignans, phenylpropanoid conjugates, and flavonoids. Many of these compounds are considered to be phytoalexins, i.e., antimicrobial compounds implicated in plant defense. Therefore, impairing steps of the phenylpropanoid pathway can result in either accumulation or reduced abundance of these compounds, often resulting in pleiotropic effects on plant resistance. Phenolic compounds are also important in plant-pathogen recognition. For example, the expression of Agrobacterium tumefaciens Virulence (Vir) genes, needed for infection, is induced by phenolic compounds and infection of the host plant cannot take place in the absence of these compounds.

14Evidence for a role for lignin and soluble phenolics in plant defense has been obtained from the analysis of the pathogen resistance of transgenic plants and mutants with contrasting lignin amount or composition. For example, in tomato, the total content of soluble phenolics and lignin were significantly higher in varieties that were resistant to the vascular bacterium R. solanacearum than in susceptible ones, and this enhanced resistance was associated to a greater accumulation of lignin in roots upon bacterial infection, a process that was triggered by salicylic acid. In tobacco, plants down-regulated for PAL had reduced levels of chlorogenic acid and exhibited more rapid and extensive lesion development than wild-type plants upon infection with the fungal pathogen Cercospora nicotianae. The increased disease susceptibility in this PAL-suppressed line was suggested not to result from the inhibition of the pathogen-induced response, but rather from the decrease in the developmental accumulation of chlorogenic acid. However, the lignin content in this PAL-suppressed line was not determined and therefore it cannot be excluded that the enhanced susceptibility was caused by reduced lignin content or a weaker cell wall. In accordance with the latter studies, transgenic tobacco plants constitutively overexpressing PAL genes showed a higher tolerance toward C. nicotianae and Phytophthora parasitica pv. nicotianae. Notably, COMT and CCoAOMT antisense tobacco lines were more resistant to Agrobacterium tumefaciens infection and showed a reduced tumor area and mass relative to wild-type plants. The phenolic compounds secreted by these antisense plants upon wounding did not induce the expression of the bacterial Vir genes equally well as those secreted from wounded wild-type plants. In other words, the Agrobacterium did not recognize its host because of the difference in soluble phenolics.

15In cotton (Gossypium hirsutum), quantitative analysis of resistance to the wilt fungus V. dahliae revealed an association between increased lignification in the stems upon infection and resistance against wilt. In line with these data, overexpression of the cotton DIRIGENT1 gene, which enhances lignification, blocks the spread of V. dahliae. In alfalfa (Medicago sativa), down-regulation of the HCT gene leads to plants with reduced lignin levels, constitutive defense responses and enhanced tolerance to the fungal pathogen Colletotrichum trifolii. This activation of defense responses was hypothesized to be triggered by bioactive cell wall fragments released from the secondary cell wall. In melon (Cucumis melo), lignin accumulation upon infection was found to increase faster and to a higher level in lines resistant to the powdery mildew fungus Podosphaera fusca than in susceptible lines, and this differential accumulation correlated with enhanced PAL levels. Lignin composition seems to play an important role in pathogen resistance in flax, as RNAi-mediated suppression of a CAD gene increased flax susceptibility to the vascular fungus F. oxysporum.

16Also in grasses the effect of modifying lignin biosynthesis on plant susceptibility has been investigated. For instance, in wheat (Triticum monococcum), silencing the monolignol biosynthesis genes TmPAL, TmCOMT, TmCCoAOMT, and TmCAD led to super-susceptibility of leaf tissues to the fungus B. graminis f. sp. tritici, the causal agent of powdery mildew disease. The increased accumulation of mono- and diferulates in the cell walls of oat and wheat upon infection with P. coronate sp. avenae and Agrobacterium sp., respectively, has been associated with resistance toward these pathogens. In transgenic rice overexpressing the NPR1 HOMOLOG 1 (NH1), a suppressor mutant screening was performed and a mutation in the SUPPRESSSOR OF NH1-MEDIATED LESION FORMATION AND RESISTANCE (SNL6) gene, which encodes a CCR-like protein, was selected. snl6 mutants had a lower lignin content and a reduced resistance to the bacterium X. oryzae pv. oryzae. Mutations in BROWN MIDRIB 6 (BMR6) and BMR12 in sorghum (Sorghum bicolor L.) allowed the development of forage and grain lines with a reduced lignin content and modified lignin composition. The bmr6 and bmr12 mutants, that are defective in CAD and COMT proteins, respectively, restricted the growth of different Fusarium spp. (F. thapsinum, F. proliferatum, and F. verticillioides), but not that of Gibberella fujikuroi. It is unknown whether the alteration of lignin composition or the accumulation of phenolic compounds is causative to the enhanced resistance of these sorghum mutants to Fusarium sp.

17In trees, the contribution of lignin amount or composition on susceptibility to pathogens has been also investigated. For example, in eucalyptus, the deposition of lignin in necrophylatic periderm in the early stages of infection by Mycosphaerella explains the greater resistance of Eucalyptus nitens as compared with E. globulus. Comparative metabolite profiling of xylem tissue of Ulmus minor and Ulmus minor × Ulmus pumila after inoculation with Ophiostoma novo-ulmi showed that the hybrid has a faster defense response, which is characterized by an increase in the amount of lignin. Similarly, the infection of Pinus nigra by Sphaeropsis sapinea induces an increase in the deposition of lignin that was associated to resistance. Interestingly, in hybrid poplar (Populus tremula × Populus alba) no increased disease incidence was observed in field-grown antisense COMT and CAD lines relative to that observed in wild-type trees, nicely showing that altered lignin biosynthesis does not necessarily negatively impact resistance to pathogens.

18In summary, a general positive correlation between lignin amount and pathogen resistance has been observed, in particular when the plant-pathogen interaction concerns vascular pathogens, such as Fusarium sp., Xanthomonas sp. or Verticilium sp., that generally spread through the secondary-thickened xylem. In the majority of the examples analyzed, the impact of lignin modification on the regulation of other defense responses has not been studied, and it is not yet possible to conclude whether the role of lignin in resistance is merely passive or active by regulating specific immune responses.

19Several lines of evidence support a role for lignin in immunity of Arabidopsis to pathogens. The expression of some lignin-biosynthesis genes was induced, and the amount of lignin increased, by treating Arabidopsis with hormones (i.e., salicylic acid, abscisic acid or jasmonic acid) that regulate plant defense. Similarly, infection of Arabidopsis with particular pathogens, such as the bacteria P. syringae pv. tomato and X. campestris, resulted in increased expression of lignin-biosynthesis genes and in higher lignin levels. Experiments also hinted to specific stress-related roles for the different gene family members involved in certain enzymatic conversions. For example, the Arabidopsis CCR2 gene has been suggested to participate in the hypersensitive response to X. campestris as its expression was up-regulated after inoculation with this bacterium, in contrast to CCR1 which was preferentially expressed during development.

20The analysis of Arabidopsis mutants defective in lignin biosynthesis and of transgenic plants overexpressing lignin biosynthesis genes has contributed to unravel the role of lignin in plant immunity. For example, two pal1/2/3/4 quadruple mutants with 20% and 25% residual lignin levels and 25% residual salicylic acid levels, showed a stunted growth and were hypersusceptible to P. syringae. In addition, the total salicylic acid levels in the quadruple mutants after infection were about 50% of those in wild type, suggesting that pathogen-induced, salicylic acid-mediated resistance might be partially impaired in this mutant. The Arabidopsis comt mutant was found to be slightly more susceptible than wild-type plants to P. syringae pv. tomato DC3000, but also to B. cinerea, A. brassicicola and X. campestris pv. campestris, and B. graminis f. sp. hordei, that is a barley pathogen that does not colonize Arabidopsis plants. Unexpectedly, asexual sporulation of the oomycete H. arabidopsidis, causing the downy mildew disease, was impaired in the comt mutant. This phenotype was not correlated with an increased salicylic and jasmonic acid-dependent defense, but with a higher frequency of oomycete sexual reproduction within comt mutant tissues. It was further proven that comt mutants accumulated soluble 5-hydroxyferuloyl-malate and that this compound promoted sexual oomycete reproduction in vitro. Arabidopsis f5h1 mutants showed an increased susceptibility to the fungal pathogen S. sclerotiorum and to the vascular fungus Verticillium longisporum. The f5h1 mutants have similar amounts of lignin as compared to wild type, but lack S units in the lignin and are sinapate ester deficient. Because sinapate esters inhibit fungal growth in vitro, their absence in f5h1 might explain the mutant’s increased susceptibility toward fungal pathogens. Interestingly, the UGT72E2 over-expressing Arabidopsis line, in which lignin was not altered but the soluble phenylpropanoid coniferin accumulated, was less susceptible to V. longisporum. All together these results again strongly support that not only the lignin polymer but also the soluble phenolic pool plays a significant role in the defense of plants against pathogens. As described above for crops and other plant species, a general positive correlation between lignin amount and resistance toward pathogens has been observed in Arabidopsis too. However, a deeper characterization of the impact of the lignin alterations on Arabidopsis immune responses and its relation with the content and profile of phenolics is needed to elucidate the molecular mechanisms explaining the differential responses of the mutants to pathogen infection (Table 1).

21In Arabidopsis, the plant’s response to the perturbation of lignin has been studied in a collection of mutants, each mutated in a single gene of this pathway, by combining transcriptomics and metabolomics (; Figure 1). These analyses revealed that c4h, 4cl1, ccoaomt1, and ccr1 mutants, that produced less lignin, upregulated the shikimate, methyl-donor, and phenylpropanoid pathways (i.e., the pathways supplying the monolignols), whereas, f5h1 and comt mutants, that provoked lignin compositional shifts, downregulated the very same pathways. Moreover, some of these mutant alleles revealed subtle differences in the metabolic and gene expression profiles that might contribute to differential resistance responses to pathogens. This collection of mutants represents a unique tool to further characterize the specific contribution of lignin biosynthesis to resistance against different types of pathogens in Arabidopsis.

22Several hypotheses can be formulated to explain the resistance or the susceptibility observed in mutants and transgenic plants affected in the amount and/or composition of lignin and, more broadly, the secondary cell wall (Figure 2): (i) The perturbation of lignin or secondary cell wall structure modifies the physical barrier that pathogens must overcome to invade the plant. This perturbation can lead to enhanced resistance or susceptibility as these pathogens might lack the enzymes required for a proper degradation of this novel physical barrier, or wall degradation by pathogens is now facilitated, respectively; (ii) The reduced amount of lignin or the modification of lignin or secondary cell wall composition impacts the strength of the secondary cell wall resulting in collapsed xylem. A drop in vascular conduction might negatively contribute to plant colonization by vascular pathogens; (iii) The reduction of lignin amount and the modification of the secondary cell wall can loosen the wall, facilitating the constitutive or pathogen-induced release of cell wall DAMPs, which might trigger immune responses resulting in enhanced resistance to pathogens; (iv) The perturbation of the lignin pathway could lead to the accumulation of soluble phenolic compounds that are either toxic to some pathogens (e.g., resulting in a reduced virulence), or serve as a new carbon or nutrient source for pathogens that then will grow better (e.g., resulting in enhanced virulence); (v) Similarly, the perturbation of the lignin pathway could also lead to the accumulation or decrease of soluble phenolics that are plant-pathogen recognition compounds, which would result in an enhanced susceptibility or resistance, respectively. Although these hypotheses might explain some of the published phenotypes, other molecular explanations cannot be excluded and a deeper molecular and biochemical characterization is required for a better understanding of the contribution of the secondary cell wall to pathogen resistance.

23Lignin negatively impacts the conversion of lignocellulosic biomass into fermentable sugars, making it one of the most important limiting factors in the processing of plant biomass to pulp and biofuels. Hence, modifications of the plant secondary cell wall can contribute to the improvement of biomass processing in paper mills and bio-refineries. However, one critical question for lignocellulosic feedstock development is whether engineering the secondary cell wall, including its lignin content and composition, will affect plant defense against pathogens. In this review, we have summarized the role of the cell wall in plant resistance toward pathogens. We conclude that plants with altered secondary cell walls may either have an enhanced or a reduced resistance toward pathogens, or no effect at all, depending on the alterations made and the pathogens tested. Because our current knowledge on the role of the cell wall (primary or secondary) in defense against pathogens is still fragmentary, it is difficult to predict how specific alterations of the cell wall will influence a plant’s resistance toward pathogens. A deeper investigation of the role of the plant cell wall in pathogen resistance and the biochemical networks underlying this resistance is required.

24The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.