The Gut–Brain Axis and Its Relation to Parkinson’s Disease: A Review

1Parkinson’s disease (PD) is the second most common neurodegenerative disorder with an estimated prevalence of approximately 1% among individuals over the age of 65. The worldwide burden of PD has more than doubled over the past three decades, increasing from 2.5 million patients in 1990 to over 6.1 million in 2016. This trend is expected to continue in the coming generations as the global population continues to increase in age. In addition, period effects also suggest the age-adjusted incidence of PD is increasing among males. Hence, the prevalence of Parkinson’s Disease (PD) is estimated to reach nearly 1,238,000 cases by the year 2030 in the United States alone. PD is a progressive neurodegenerative disease characterized by the pathological misfolding of alpha-synuclein (α-syn) protein which subsequently impacts the function of the central, peripheral, and enteric nervous systems. PD is also a multifactorial disease with both genetic (e.g., 23 genes are linked to Mendelian forms of parkinsonism, and 187 genes in ∼90 loci have been associated with idiopathic PD) and environmental (e.g., head injury, cigarette smoking, caffeine consumption, exposure to certain pesticides/herbicides or heavy metals, etc.) risk factors. Misfolded α-syn aggregates, otherwise known as Lewy body deposits, contribute to the degeneration of dopaminergic neurons within the substantia nigra and other related circuitry, and ultimately the onset of several cardinal motor and non-motor features of PD including dementia, gastrointestinal (GI) dysfunction, tremor, postural instability, bradykinesia, and rigidity. Although most commonly located in the brain, α-syn aggregates have also been found in peripheral locations, such as the enteric nervous system (ENS), lending support to the idea of a “gut–brain axis,” a bidirectional communication pathway between the central and enteric nervous systems and the GI system (; Figure 1).

2Alpha-synuclein is a neuronal protein found at synapses and is abundantly found in the brain (Figure 1A) and is associated with the neuropathology observed in PD and related neurodegenerative disorders (e.g., Lewy Body Disease and Multiple System Atrophy), predominantly through the formation of aberrant aggregates that may disrupt cellular homeostasis, synaptic function, and induce neuronal degeneration. Notably, α-syn is released through an unique secretory pathway, and although the exact mechanisms of fibrillar α-syn cellular secretion and uptake are not well understood, extracellular forms of this protein have been found in both rodent and human brain and interstitial fluid, providing a potential avenue for intercellular propagation. A recent study using primary neuronal cell cultures and in vivo microdialysis found that approximately 70% of extracellular α-syn originates from neuronal activity-dependent pathways (e.g., glutamatergic neurotransmission). Further, microglial activation and subsequent neuroinflammation is associated with misfolded α-syn in PD. Whether neuroinflammation triggers protein misfolding or, alternatively, the presence of misfolded α-syn promotes a neuroinflammatory response capable of initiating PD pathology, has not yet been definitively determined and neither is mutually exclusive. While several potential factors associated with α-syn misfolding and aggregation have been identified [e.g., intra- and extra-cellular pH, ionic concentration, presence of metals], the underlying mechanisms are still largely unknown. Clearly, chronic and constitutive α-syn gene expression is a major risk factor as gene dose is inversely correlated with age at onset.

3The presence of healthy intestinal microbiota promote the integrity of the blood–brain barrier (BBB) through regulation of tight junction protein expression (e.g., occludin and claudin-5) mediated by short chain fatty acids (SCFAs). SCFAs play an important role in maintaining intestinal barrier integrity by preventing microbial translocation, that is known to be associated with local intestinal inflammation, systemic inflammation and neuroinflammation. However, dysbiosis of the microbiome, associated with an increased abundance of potentially detrimental bacteria, can compromise gut barrier integrity through bacterial production of endotoxins (e.g., lipopolysaccharide) capable of altering immune response, initiating proinflammatory pathways, and directly damaging intestinal epithelial cells. In the bloodstream, lipopolysaccharide (LPS) interacts with immune cells, upregulates systemic expression of proinflammatory cytokines (e.g., TNF and interleukins) and inflammation, and, in high concentrations, may directly disrupt the BBB to induce neuroinflammation. Further, LPS has been found to induce a structurally distinct strain of self-renewing α-syn fibrils in mice capable of initiating hallmark patterns of synucleinopathy similar to that induced by the wild-type form of α-syn commonly observed in PD. The modulation of α-syn amyloidogenesis caused by interaction with LPS has been characterized as a heteromolecular interaction resulting in the formation of intermediate nucleating species which then mature into divergent fibrillar forms of α-syn, affecting both cellular internalization and related cytotoxicity.

4Several studies have explored the potential connection between α-syn-related pathology and GI symptoms of PD. While α-syn is found copiously in the brain, it is also found in the ENS and is produced by enteric neurons to mediate neurotransmitter release and uptake. In individuals with PD, pathological α-syn aggregates have been found in GI tissue biopsies, lending support to the theory that PD pathology could be initiated in the ENS. Importantly, α-syn has also been found in the salivary glands, esophagus, and stomach, potentially corresponding to common non-motor symptoms such as hypersalivation, dysphagia, delayed gastric emptying, and gastroparesis. In a study involving a transgenic mouse model of PD, an amyloid precursor protein inhibitor, Posiphen, was injected into the mice to inhibit the misfolding of α-syn. Results of this study demonstrated normalized distal colon motility following treatment, an important factor associated with maintenance of a balanced microbiome – presenting a potential novel early intervention for PD, given the frequent early onset of GI symptoms related to gut motility such as constipation, which warrants further investigation. However, a recent study reported the sensitivity associated with the presence of α-syn in colon tissue biopsies of PD patients to be approximately 14% (8/57). A meta-analysis of 21 studies estimated the sensitivity and specificity of α-syn in the colon tissue to be approximately 57 and 82%, with an approximate pooled odds ratio of 10 compared to non-PD controls. Though presence of α-syn in the gut likely contributes to development and progression, it is neither necessary nor sufficient for onset of PD pathology and is not an adequate predictor of future disease.

5Notably, and proposed potential involvement of the GI tract in the development and progression of PD. The authors hypothesized that an unknown pathogen may enter the body through the nasal cavity, and such a neurotropic pathogen could potentially induce conformational changes in normal α-syn molecules, thereby resulting in their aggregation. The pathogen could then enter via the gastric mucosa and subsequently the central nervous system (CNS) via retrograde transport. Braak and colleagues hypothesized that PD α-synucleinopathy begins in the periphery, gains access to the CNS via retrograde transport along vulnerable neuronal projections within the ENS, and ascends caudo-rostrally from the lower brainstem in various distinct stages. This hypothesis is unique in that it proposes a potential outside source (e.g., pathogen) as the catalyst for the onset of PD pathology as opposed to an inherent or internally driven mechanism. However, this hypothesis and its related staging system has been historically criticized for its lack of applicability to patients outside of a particular subset of those with the sporadic form of PD. Evidence supports some aspects of this hypothesis such as the presence of α-syn aggregates in the vagus nerve and their ability to spread from the ENS to the CNS (; Figure 1D) as well as the related prevention of this propagation following vagotomy in animal models of PD. Further, novel experimental models of PD have been developed through direct initial inoculation of α-syn in the GI tract that subsequently induces synucleinopathy pathology in the CNS. Nevertheless, recent results from a whole-body autopsy series of PD, incidental Lewy body disease, and otherwise healthy control participants (N = 187) failed to demonstrate a single case in which there was Lewy pathology in the gut without Lewy pathology also present in the brain. Therefore, further research is warranted to establish whether Lewy body pathology may originate in the gut independently from that of the brain, and whether this pathology in the gut is associated with clinically significant differences in disease-state or health outcomes related to PD compared to those without gut involvement to determine its potential utility as a novel intervention method.

6The microbiome is the collection of all individual microbes (bacteria, fungi, viruses, and single-celled organisms), forming complex microbiota, and their genomes within a particular anatomic site. It is dynamic across the lifespan and is influenced by a multitude of factors including, age, lifestyle factors including diet and exercise patterns, and medication use. The GI tract in mammals contains a complex and symbiotic ecosystem with diverse interactions between the GI epithelium, immune cells, and commensal microbes. The gut microbiota are thought to be key mediators in the bi-directional communication between the gut and the brain along the gut–brain axis that influence neurodevelopment, brain function, and behavior. An undesirable shift in microbiota composition, termed dysbiosis, has been associated with both GI and metabolic diseases such as inflammatory bowel disease, obesity, and diabetes. Gut dysbiosis has also been observed in various neurological and psychiatric conditions including autism spectrum disorder, major depression, PD, and Alzheimer’s disease. Certain gut microbiota composition dynamics have been associated with specific diseases or conditions across a broad population (e.g., increased relative abundance of the Akkermansia genera over time among individuals with PD across multiple geographic locations (Finland, Germany, Japan, Russia, and United States). However, defining a generalizable “normal” or “healthy” gut microbiome across the lifespan remains an important challenge due to both natural interindividual differences and intraindividual changes in microbiota composition over time.

7A study analyzing 190 colonic tissue samples from participants with and without GI-related conditions (e.g., Crohn’s disease, ulcerative colitis, and controls being treated for cancer) estimated the average gut microbiome to be comprised of up to 35,000 species of bacterial and archaeal species; approximately 90% appearing to belong to the phyla Bacteroidetes and Firmicutes. Commensal gut microbiota play an important role in maintaining homeostasis and preventing certain pathologies, partly through production of vital micronutrients and fermentation of otherwise non-digestible polysaccharides into SCFAs (e.g., acetate, propionate, and butyrate). SCFAs serve as a source of energy for host tissue, function as signaling molecules to regulate the expression of tight junction proteins of the intestinal epithelial barrier and play a role in the modulation of host immunity. Additional work has demonstrated that butyrate plays a role in regulating immune response via expansion of Treg cell populations, which is suggestive of a role for SCFA in ameliorating pro-inflammatory responses of immune cells to antigenic stimuli. Certain microbes, such as Faecalibacterium prausnitzii, help maintain homeostasis through production of SCFAs (butyrate) and modulation of downstream inflammatory pathways through potential induction of a tolerogenic cytokine profile (e.g., low secretion of proinflammatory and elevated secretion of anti-inflammatory cytokines). A recent microbiome-wide association study using two large datasets (N = 333; N = 507) observed an elevation of opportunistic pathogens, while potentially beneficial bacteria able to metabolize carbohydrates (precursors for SCFAs) among individuals with PD, were depleted in this same population. Further, compared to conventionally colonized controls, GF mice (mice raised under sterile conditions or depleted of their intestinal microbiota through administration of oral broad-spectrum antibiotics) exhibit substantial physiological alterations, such as increased BBB permeability, that are relevant to neurodegenerative disorders such as PD. Depletion of the gut microbiota through administration of antibiotics was associated with statistically significant improvement in various motor symptoms (duration and severity of dyskinesia, duration of medication “off” state, functional impact of motor functions, and complexity of motor fluctuations) among 14 individuals with PD.

8Non-motor symptoms, including GI disturbances such as constipation, have often been found to considerably precede the onset of hallmark neurological features of PD. Further, over 80% of PD patients report some level of GI dysfunction throughout the course of their disease. Further, according to the Honolulu Heart Program study, males between 51 and 75 years of age who passed less than one bowel movement per day were 2.7 times more likely to develop PD compared to males of the same age range who passed at least one bowel movement per day. Although research on the relationship between the GI system and neurodegenerative diseases is still in its early stages, several promising hypotheses have been developed. The gut microbiome is thought to play a role, in at least a subset of PD patients, in both the initiation and progression of PD pathology and symptomology. Studies have shown a correlation between the increased occurrence of neurodegenerative diseases and conditions known to be associated with disrupted gut microbiota diversity such as insomnia, REM sleep behavior disorder (RBD), and constipation, with approximately 40–65% of RBD patients developing a neurodegenerative disorder within 10 years of RBD diagnosis. Moreover, in a study of 172 RBD patients, 94% of those with associated comorbid neurodegenerative disease had a form of synucleinopathy. Gut microbiota may modify the association between RBD and PD given the evidence from a recent study where there was an increase in the relative abundance of genus Akkermansia, a genus of mucin-metabolizing bacteria that are commonly elevated among individuals with PD, in individuals with RBD.

9Colonic motility follows a circadian rhythm similar to that of the suprachiasmatic nucleus in the brain and can be become desynchronized due to changes in a variety of external stimuli including light exposure, food intake patterns, and exercise. Sleep disturbances are also known to be associated with potentially pathological mechanisms (e.g., proinflammatory pathway expression, stress on the endoplasmic reticulum, abnormal proteostasis, impaired glymphatic clearance, nocturnal cerebral hypoxia, and altered modulation of specific neural circuits) that may increase the risk for PD. As pathological α-syn has been observed to propagate along the brain’s inherent neural networks (e.g., network-spread hypothesis), sleep disturbances that affect related neural networks may influence either the development or transmission of α-syn aggregates in the brain. Therefore, sleep-related disorders may be indirectly associated with risk of PD and may result from pathological mechanisms associated with sleep disturbance, with maladaptive shifts in the microbiota being both a possible product of and a risk factor for this potential pathway (e.g., positive feedback loop).

10Various studies over the past few decades have observed distinct differences in microbiota composition between individuals with and without PD, as well as between individuals with different PD phenotypes of symptomology. A recent study observed differences in the microbiota (elevated Akkermansia, Eggerthella, and Synergistetes; depleted Prevotella) between A53T transgenic monkeys with early-stage PD and control monkeys. These results extend upon commonly observed microbiota differences between human PD patients and healthy controls to an earlier timepoint of disease progression. Generally, studies have found that those with PD have a higher relative abundance of bacteria from the genera Akkermansia, Lactobacillus, and Bifidobacterium, and lower relative abundances of Prevotella, Faecalibacterium, Bacteroidetes, and Blautia genera. These differences in relative abundance have been linked to outcomes associated with the disease and could be considered dysbiosis (a deleterious microbiota composition characterized by the loss or gain of bacteria that promote health or disease, respectively in this population. Specifically, Lactobacillus, Enterococcus, Escherichia, and Proteus genera have been positively associated, and Blautia, Faecalibacterium, and Ruminococcus have been negatively associated with the Unified Parkinson’s Disease Rating Scale (UPDRS – a scale that measures intellectual function, mood, behavior, ability to perform activities of daily living, and motor functionality and complications), respectively. Members of the Lachnospiraceae family have been found to be negatively associated with postural instability and gait disturbances and those of Enterobacteriaceae have been positively linked to general symptom severity. Further, inflammatory biomarkers and SCFAs in the stool are both inversely associated with microbial alpha diversity in the gut, with some bacterial taxa being directly correlated with SCFA levels (↓SCFAs: Akkermansia, Escherichia/Shigella, Flavonifractor, Intestinimonas, Phascolarctobacterium, Sporobacter; ↑SCFAs: Butyricicoccus, Clostridium sensu stricto, Roseburia). However, it should be noted that these relationships are correlational and are likely influenced by a multitude of both disease-specific and non-specific internal and external factors such as medication type and dose, changes in physical activity and diet, and changes in gut transit time related to PD pathology. Additionally, it is not yet known whether these relationships are simply a product of physiological alterations, either due to changes in external factors associated with the disease (e.g., behavioral or diet changes, use of medications, etc.) or pathological disease progression, or whether they may be indicative of the microbiota being a true contributing factor of PD. Given the complex bidirectional relationship between the microbiome and host health in addition to the heterogeneity in clinical phenotypes of PD, is possible that microbiota dynamics are both a product PD pathology as well as potential drivers for the onset and progression of the disease.

11The influence of gut microbiota on its host is determined both by composition and abundance, which are influenced by a variety of internal and external factors, including host genetics, age, dietary and lifestyle habits, and antibiotic and other medication use. Evidence suggests that gut microbiota indicative of good health have the ability to positively regulate neuroimmune response in the CNS, and that bacterial dysbiosis (e.g., maladaptive shifts in the microbiota composition and/or abundance) could promote a neuroinflammatory response, increasing the risk for the development of neurodegenerative diseases. Dysbiosis may lead to compromised gut barrier integrity, subsequent microbial translocation (Figure 1C), and disruption of the neuroendocrine system through the production of LPS and upregulation of proinflammatory cytokines. Certain bacteria can specifically signal enteric dopaminergic neurons through neuronal uptake of secreted bacterial amyloids and neurotransmitters, thereby influencing intestinal mobility and secretion through indirect action on vagal afferent fibers. The presence of bacterial overgrowth and dysbiosis may be detected by increased urinary indoxyl sulfate and possibly low abundance of fecal Prevotellaceae, a bacterial family often found to be depleted in PD and inversely correlated with motor score severity on part 3 of the UPDRS. However, the metabolic capabilities of Prevotellaceae, and which specific members of this bacterial family may play a role in PD, are not well understood.

12The relationship between certain gut microbiota and increased intestinal barrier permeability is noteworthy as compromised barrier integrity has recently been observed in PD patients and could potentially contribute to the misfolding of α-syn proteins. One study found increased levels of fecal calprotectin zonulin and alpha-1-antitrypsin in PD patients compared to age-matched controls, indicating increased intestinal inflammation and disrupted barrier function in this population. In another study involving sigmoid biopsies of patients with PD, investigators found decreased expression of tight junction proteins ZO-1 and occludin, as well as irregular distribution of these proteins in the tissue biopsies, in PD patients compared to non-PD controls. To our knowledge, only four studies have investigated intestinal permeability in PD compared to matched controls, three of which used a non-invasive orally administered sugar probe as opposed to direct colonic tissue biopsies. Notably, one of these studies found intestinal permeability in PD patients to be significantly correlated with intestinal expression of α-syn, presence of Escherichia coli in the gut, and increased levels of LPS-binding proteins in serum. Gut microbiota not only mediate intestinal inflammation and permeability within the GI tract, but may also influence expression of α-syn within the brain due to changes in permeability of the BBB.

13Despite all the evidence pointing to the potential link between gut bacteria, inflammation, and PD, the underlying molecular mechanisms remain elusive. PINK1 (kinase) mutations are implicated in PD etiology and PINK1 likely plays a role in immune function and is instrumental in mitochondrial dynamics. reported that PINK1 can suppress antigen presentation derived from degraded mitochondria induced by LPS exposure. Recently, also proposed that in the absence of PINK1, mitochondrial antigen presentation resulting from intestinal infection and insult can lead to dopamine neuron dysfunction. These results are consistent with findings where motor deficits in PD patients worsen during peripheral infections. Taken together, these results support the notion that PINK1 is a repressor of the immune system and that intestinal infection may be a trigger for PD, which supports the role of the gut–brain axis in this disease.

14The bidirectional pathway between the gut and the brain has been of interest for several decades and a variety of methods have been utilized to investigate this axis including infection studies, germ-free (GF) animal models, and intervention studies (e.g., prebiotics, probiotics, antibiotics). It is thought that commensal bacteria can both indirectly and directly influence PD pathology through the circulatory and nervous systems, both enteric and central. The neural communication for the GI tract involves a multi-tier network beginning with the myenteric submucosal plexus and enteric glial cells. Most notably, catecholaminergic neurons are most tightly juxtaposed to the lumen of the gut. The vagal nerve directly innervates the myenteric plexus, and these neurons lead to prevertebral ganglia within the spinal cord and finally to higher brain centers. Terminals of the vagal afferent neurons, which are positioned within the gut mucosa, directly convey information to the brain and have been shown to be responsive to LPS, an endotoxin produced by Gram-negative bacteria. High levels of LPS have been shown to activate vagal afferent neurons, resulting in hypophagia (reduction in food intake and eating behavior) and weight loss – common non-motor symptoms of PD. In PD, certain microbiota compositions (e.g., dysbiosis) have been found to stimulate the production of inflammatory cytokines and LPS, leading to intestinal epithelial damage and compromised barrier integrity. Increased intestinal permeability results in microbial translocation and the introduction of bacterial-derived toxins and host-derived inflammatory cytokines (TNF, IL-6, IL-1) into the blood stream (Figure 1C), providing an avenue for direct interaction with the nervous system mediated by compromised integrity of the BBB. These cytokines have been found to be significantly elevated in the serum of individuals with PD compared to healthy controls and may correlate with symptom severity and progression of disease.

15Studies involving the maturation of GF animals have provided evidence supporting the theory that the gut microbiota are essential for the appropriate development of both the ENS and CNS. Further, the complete absence of bacterial colonization in the gut of these GF animals has been associated with distinct alterations in the functionality of the CNS and ENS including delayed gastric emptying, increased intestinal transit time, reduced migrating myoelectric complex periods (normal cyclic motility patterns which occur in the stomach and small intestines during periods of fasting), enlarged cecum, altered gene expression related to regulation of neurotransmitters, muscular contractile proteins, and brain-derived neurotrophic factor (BDNF). Animals raised in GF conditions have also demonstrated increased BBB permeability through decreased expression of tight junction proteins, potentially due to a lack of bacterial-derived SCFAs, capable of improvement following colonization with commensal microbiota. Taken together, these studies suggest the inherent presence of a bidirectional pathway between the gut and the brain, mediated by the microbiota, is vital for proper nervous system maturation and function.

16The vagus nerve is a critical component in the connection between the gut and the brain, through either direct interaction with the microbiota or indirect interaction mediated through microbiota communication with enteroendocrine cells (Figure 1B) and subsequent signaling to afferent neurons via hormone production (e.g., cholecystokinin, 5-hydroxytryptamine, peptide YY, etc.). Several retrospective studies have explored the possible link between history of vagotomy (removal of a portion of the vagus nerve thereby severing the neural connection between the gut and the brain) and the risk for developing PD. One large retrospective cohort study involving over 14,000 previously vagotomized patients observed a decreased risk, though not reaching significance, for developing PD in patients who had a specific type of vagotomy, known as a truncal vagotomy (division of the anterior and posterior vagal trunks). However, another similar study including 9,430 vagotomized patients and matched controls over a cumulative 7.3 million person-year follow-up period produced conflicting results revealing no association between vagotomy and risk for PD. Further, other recent studies have suggested systemic brain-to-gut communication that bypasses the vagus nerve. found evidence of either caudo-rostral or rostro-caudal spread of pathological α-syn in a non-human primate model of PD with no pathological lesions observed in the vagal nerve. An additional study using a rat model of PD found evidence of pathological changes originating from nigral overexpression of α-syn (e.g., significant neuronal loss in ileal submucosal plexus, increased glial expression in myenteric plexus, alterations in gut microbiome composition and bile acid metabolism), further supporting the brain-to-gut propagation that may be entirely independent of the vagus nerve. Additional research is necessary to definitively characterize the potential modes of pathological α-syn propagation in PD to inform potential future screening or therapeutic options.

17While immunotherapy is now frequently used for the treatment of cancer, there has been recent interest in the potential utility of this approach for PD, and other neurodegenerative diseases known to be mediated by host immune function. Such immunotherapy targets elevation of regulatory T cell counts and upregulation of regulatory T cell function, which are both commonly significantly diminished among individuals with PD. showed that in PD, there is T-cell recognition of defined epitopes, which are derived from α-syn, presented by certain Major Histocompatibility Complex (MHC) alleles. This is capable of driving both helper and cytotoxic T-cell responses in PD patients. Further, T cells that are specifically reactive to α-syn have been associated with preclinical and early stages of PD. The metabolites of certain gut bacteria, particularly butyrate, have recently been observed to improve efficacy of certain cancer therapeutics through upregulation of CD8+ T cells within the microenvironment, both in vitro and in vivo. Additionally, a recent study observed an inverse association between microbial diversity (artificially depleted with an antibiotic cocktail) and intratumor specific immune responses derived from injection with a neoantigen cancer vaccine. However, the mechanisms underlying the relationship between gut microbiota dynamics and adaptive immune response in animal models of disease are yet to be determined. The results of these recent studies support the hypothesis that microbiota and associated metabolites modify therapeutic efficacy and health outcomes through modulation of the host immune system.

18Considering the connection between microbiota and host immune function, we conducted a study to evaluate gut microbiota dynamics associated with a novel adoptive cellular therapy intervention using α-syn-specific T cells and observed distinct clustering of the microbiota between animals in the treatment and control (injection with a novel adoptive cellular therapy or saline placebo) groups post-baseline, respectively. Further, specific bacterial taxa found to be differentially abundant among the animals in the treatment arm compared to the control arm, such as members of the Odoribacter genus, are known to produce butyrate (SCFA known to play a role in immune modulation and gut epithelial barrier integrity). These results suggest that the gut microbiota are associated with immunotherapy in the context of PD. However, whether observed microbiota dynamics influence outcomes related to the immunotherapy or are conversely a product of the therapy and/or progression of PD pathology is not clear.

19Gut microbiota have also been found to influence the ability of the host to uptake certain orally delivered pharmaceuticals due to their functional capabilities and metabolic processes. More specifically, recent research suggests that gut microbiota composition contributes to the variability of L-dopa efficacy among PD patients as certain bacterial species (Enterococcus faecalis and Eggerthella lenta A2) are known to metabolize this compound prior to crossing the BBB, rendering it inactive and ineffective. Further, common PD drugs, such as levodopa and LD-carbidopa intestinal gel, have been found to induce changes in both the composition and functional metabolic capacity of the gut microbiota. In a study including 107 PD patients categorized into groups by pharmaceutical regimen (levodopa: N = 46, LD-carbidopa intestinal gel: N = 38, antiparkinsonian medication naïve: N = 23), differences in microbiota composition were observed both between medication groups and the medication naïve group. Among those in the LD-carbidopa intestinal gel group, the relative abundance of Enterobacteriaceae, Escherichia, and Serratia was increased compared to the levodopa group, and Proteobacteria and Enterobacteriaceae were found to be in higher abundance and Firmicutes, Lachnospiraceae, and Blautia were found to be reduced in relative abundance compared to the naïve group. Blautia and Lachnospiraceae were also observed to be reduced among the levodopa group compared to the naïve group. Further, both medication groups were associated with a metabolic profile linked to intestinal inflammation. This evidence suggests a complex relationship between the gut microbiota and PD treatment outcomes in which the overall composition is influenced by common PD pharmaceuticals while specific taxa are also directly involved in the metabolism and uptake of these same pharmaceuticals. The microbes known to metabolize PD pharmaceuticals and decrease their efficacy may represent a promising target for methods aiming to improve patient outcomes related to certain medications. Further, consistent alterations in the gut microbiota composition in response to certain PD medications may inform the development of a potential probiotic supplement to counteract any maladaptive changes linked to worsened symptom severity or disease progression. A recent study including 197 PD cases and 130 controls revealed distinct and statistically significant microbial signatures associated with catechol-O-methyltransferase-inhibitors, anticholinergics, and carbidopa/levodopa medications. Therefore, the influence of certain medications on the commensal microbiota is also an important factor and potential confounder of the relationship between the microbiome and PD. A homogeneous medication regimen (e.g., medication type, dosage, length of time using medication, etc.) among PD patients would be ideal for valid interindividual comparisons for microbiome studies in this population. Additionally, bacteria previously determined to be associate with PD medication should be considered when characterizing changes in the microbiota related to PD pathology.

20Supplementation with pre- and probiotics during adolescence could improve resiliency toward the development neurodegenerative disorders through modulation of various biomolecules known to reduce inflammation and promote neurogenesis (ferulic acid), suppression TNF production and decrease TLR signaling (histamines), reduction of reactive oxygen species accumulation, and improvement of synaptic plasticity (ghrelin). In the context of PD, probiotics are thought to potentially improve symptoms through altering composition of the gut microbiota to reverse dysbiosis and disrupt pathways related to inflammation and microbial translocation or “leaky gut” (Figure 1E; ). Recently, it has been found that, in a C. elegans model of synucleinopathy, supplementation with the Bacillus subtilis probiotic strain PXN21 actively cleared pre-existing α-syn aggregates as well as conferred protection against the formation of additional aggregations; however, the researchers note that this protection was likely partially mediated by model-specific DAF-16 gene expression. While there are limited human clinical trials investigating probiotic supplementation for the treatment or management of PD, a few pilot studies have been conducted for the treatment of specific PD-related symptoms, such as constipation, in this population. Recent clinical trials suggest that probiotics can be useful in ameliorating GI issues such as constipation in patients with PD, and this is a growing area of research. One recent randomized, double-blind placebo-controlled trial of 120 participants with PD and Rome-III-confirmed constipation was conducted to assess the potential use of probiotics to improve constipation. Participants consumed a fermented milk beverage, containing prebiotic fiber fructooligosaccharides (FOS) and 250 × 109 colony forming units (CFUs) of a probiotic combination (Streptococcus salivarius subsp. thermophilus, Enterococcus faecium, Lactobacillus rhamnosus GG, L. acidophilus, L. plantarum, L. paracasei, L. delbrueckii subsp. bulgaricus, and B. breve and B. animalis subsp. lactis), or a nutritionally similar placebo not containing the pre- and probiotic mixture, once daily for 4 weeks. The authors found that the fermented milk, fortified with pre- and probiotics, effectively increased the number of complete bowel movements, total number of bowel movements, and improved stool consistency (as measured by the Bristol Stool Scale) among individuals with PD. Participants in the treatment arm of this study also reported a decreased need for the use of laxatives, medications frequently used to decrease the severity of rigidity and increase bowel movement frequency. Another randomized double-blind placebo-controlled trial investigated the impact of probiotic supplementation on movement and metabolic parameters in PD. In this study, participants were randomized to receive either a probiotic combination (L. acidophilus, B. bifidum, L. reuteri, and L. fermentum, each 2 × 109 CFUs) or a placebo once daily for 12 weeks. Individuals in the probiotic combination arm experienced an average reduction of approximately five points on the UPDRS compared to an average increase of approximately four points experienced by the placebo arm. However, results did not include changes in subcomponents of the MDS-UPDRS; therefore, a concise conclusion related to the decrease in motor versus non-motor symptoms cannot be determined. While the direction of the association is promising, considering the UPDRS range of 0–195 points, a five-point reduction may not equate to a clinically or biologically relevant change. However, those in the probiotic arm also demonstrated significant reductions in free radicals and oxidative stress [known risk factors for α-syn and other protein misfolding], C-reactive protein (proinflammatory biomarker), insulin concentrations, and insulin resistance compared to those in the placebo arm. Another potential mechanism for regulating gut microbiota is through the hypothalamic–pituitary–adrenal (HPA) axis, an important pathway in the study of PD due to its involvement in immune responses to stress and inflammation. A study using GF mice found that inoculation with Bifidobacterium infantis effectively counteracted the stress-induced upregulation of the HPA axis (implemented through exposure to acute restraint stress), potentially through undetermined neural- or cytokine-mediated pathways. Such regulatory pathways highlight the potential influence of the microbiome on the modulation of stress and production of inflammatory hormones, such as cortisol. Therefore, probiotics may be a promising option to improve common symptoms of PD while also reducing levels of systemic inflammation through modulation of inflammatory pathways.

21Individuals with PD also commonly experience comorbid affective disorders such as anxiety, depression, and apathy. While no studies specific to PD have investigated treatment of these concurrent conditions by targeting the gut–brain axis, others have been conducted for different neurological disorders. In one such study, the probiotic Bifidobacterium breve strain A1 was administered to patients with schizophrenia and resulted in a 25% average decrease in symptoms related to anxiety and depression. Similar results were found in a study evaluating the impact of prebiotics in children with Autism Spectrum Disorder. It is hypothesized that similar treatment methods may be beneficial in reducing psychological manifestations (e.g., depression, anxiety, apathy, psychosis, impulsive or compulsive behaviors, etc.) associated with PD. While the underlying mechanisms of this potential association are not well understood, several pathways have been proposed. Certain microbial metabolites directly interact with enteroendocrine cells (Figure 1B) and trigger the release of various endocrinologically active compounds including cholecystokinin and glucagon-like peptide 1, which may initiate changes in host physiology and behavior. For example, glucagon-like peptide 1 has also been found to have a preventive effect on the progression of Alzheimer’s disease pathology through suppression of TNF levels and protection against synaptic dysfunction related to LPS in a murine model. Similarly, cholecystokinin is thought to activate neurons in the hindbrain and intestinal myenteric plexus and is necessary component for long-chain fatty acids [compounds associated with gut motility in a rat model] to interact with vagal afferent nerves.

22Other intervention methods targeting the microbiome–gut–brain axis to improve symptoms related to PD include antibiotics, fecal microbiota transplantation, and dietary interventions. While the use of antibiotics as a potential intervention is undoubtedly associated with adverse effects (e.g., propagation of antibiotic resistance, induction of further dysbiosis due to a potential decrease in microbial diversity), there has been recent interest concerning the effects of certain antibiotics, such as anti-inflammatory or antioxidant properties associated with Doxycycline, in neurodegenerative disorders to potentially restore balance in microbiome composition. Further, Minocycline has been linked to neuroprotective effects in an MPTP mouse model of PD through its ability to cross the BBB and prevent the loss of nigrostriatal dopaminergic neurons. It has also been suggested to influence the gut–brain axis through modulation of toll-like receptor 4 (TLR4), an important transmembrane protein present in the intestinal epithelium known to be activated by LPS derived from Gram-negative bacteria. Other studies have suggested that increased abundance of particular microbiota, such as Escherichia coli and Ralstonia species, is associated with ENS inflammation and increased levels of endotoxins and proinflammatory cytokines (e.g., TNF, IFN-gamma, interleukins, and activation of enteric glial cells), which may be diminished through the use of either antibiotics or bacteriophages.

23Fecal microbiota transplantation, a technique used to transfer feces from a healthy donor to the GI tract of a recipient, has been used to restore the commensal gut microbiota and has proven effective for treating recurrent infections with Clostridium difficile. This technique has also been evaluated for use in the treatment of other conditions unrelated to the GI tract including multiple sclerosis autism, and amyotrophic lateral sclerosis (ALS), and has recently been found to alleviate symptoms associated with Alzheimer’s disease in APP/PS1 transgenic mice. Lastly, dietary and lifestyle interventions have been of interest as a potential complementary intervention for improvement of PD symptoms. Recent evidence suggests that various lifestyle factors, including caffeine consumption and following a Western diet (e.g., high caloric intake, high levels of saturated and omega-6 fatty acids, excessive salt and sugar intake, etc.), may alter the gut microbiota and therefore mediate both the risk of developing PD and the clinical progression of previously diagnosed PD.

24Another potential method of interest in preventing or delaying the onset of PD is the utilization of molecular mimicry, a concept explaining the structural similarities in secreted proteins between microorganisms and their respective hosts. Some researchers hypothesize that α-syn may be recognized as a microbe-associated molecular pattern (MAMP) mimicking bacterial amyloids as α-syn has been observed to bind to toll-like receptor 2 (TLR2; a pattern recognition receptor important for pathogen recognition) on microglia. Interestingly, a recent study in Thy1-αSyn mice found that gut bacterial amyloid proteins, chiefly expression by curli proteins derived from Escherichia coli, promote the aggregation of α-syn in both the gut and the brain, resulting in behavioral deficits, intestinal dysfunction, and motor impairments. In another study, a mixture of SCFAs was injected into α-syn transgenic mice leading to neuroinflammation, damage to dopaminergic neurons, and motor dysfunction. These mice were then treated with minocycline, which targets TNF activation, therefore reducing aggregation of misfolded α-syn and improving motor function. Although anti-TNF drugs have been used for several decades as a treatment for inflammatory diseases such as inflammatory bowel syndrome, they have just recently been applied to neurodegenerative disorders per exploration of their potential role within the gut–brain axis. Another such study among individuals with inflammatory bowel syndrome (144,018 individuals with IBD and 720,090 matched controls) reported a 78% reduction in the incidence of PD among the population when anti-TNF therapy was previously utilized to treat symptoms related to the inflammatory bowel syndrome compared to those who were never exposed to anti-TNF therapy. Prevention or attenuation of inflammation in both the gut and the brain, through potential pathways, such as those outlined above, may confer protection against the development or progression of neurodegenerative disorders such as PD. Nevertheless, the currently FDA-approved anti-TNF inhibitors are also immunosuppressive which warrants caution when considering this approach in elderly populations. Results from several recent human and murine studies strongly suggest that gut microbiota may be modified, through the supplementation of certain pre- and probiotic combinations, to improve various clinical endpoints associated with PD [e.g., improvement in GI-related symptoms and motor coordination, decreased levels of inflammatory biomarkers and microglia activation, decreased MDS-UPDRS score, etc. (Tables 1, 2)].

25While these results are promising, further research is needed to evaluate both the feasibility and potential efficacy of utilizing long-term pre- and probiotic interventions. It is pertinent, however, to consider the potential importance of a neuroprotective microbiome across the lifespan to confer resilience against the development of future neurodegenerative disorders. Another important component for delaying onset and slowing progression of neurodegenerative disorders is early detection. The early identification of PD by specific subtype or phenotype would provide an opportunity for individualized treatment to target specific disease components, such as underlying dysbiosis of the gut microbiome. For example, a study of two Taiwanese PD populations, tremor and non-tremor dominant, found Bacteroides species to be more abundant in the non-tremor PD group, correlated with plasma levels of TNF-α and severity of motor symptoms defined by UPDRS part III, as well as an overall decreased abundance of Prevotella species in both groups of PD patients compared to non-PD controls. By evaluating the composition of gut microbiota in early stages of disease onset, it may be possible to differentiate between clinical phenotypes and therefore improve and expand upon current treatment strategies.

26As the prevalence of PD is projected to continue to increase worldwide over the next several decades, it is imperative to elucidate the distinct mechanisms and pathological origins underlying this disease. There is an increased interest in understanding the potential role, if any, of the gut–brain axis in the course of disease. It is a continuously progressing field of study, which is complicated by the multitude of factors mediating the potential influence of the gut microbiome on PD including diet and lifestyle habits, levels of inflammation, presence of comorbidities, and use of supplements or medications, etc. While this avenue of research is promising, further research is needed to ascertain the role and magnitude of bidirectionality, as well as underlying mechanisms of the gut–brain axis. The evidence presented in this review suggests there may be additional pathways apart from the vagal nerve route in which α-syn aggregates may be initiated along the gut–brain axis, including immune system mediators, gut-related hormones, and microbiota-derived signaling molecules. The aggregation and propagation of enterically derived α-syn is likely indicative of an early pathological stage that may later initiate the hallmark motor and non-motor symptoms of PD. The exact role of the microbiota in α-syn-related pathology has yet to be determined, including whether enterically derived pathological α-syn is a product of early subclinical changes in brain physiology related to PD or rather deleterious shifts in the gut microbiota prior to the onset of PD pathology, or perhaps a combination of both. Further, additional research in human subjects with consistent results are needed to verify and support promising findings from murine model studies. A better understanding of the role of the microbiome–gut–brain axis in PD will inform the conception and development of novel therapeutic interventions and diagnostic tools to ultimately improve patient outcomes. Further, future research may also consider evaluating the feasibility of PD interventions targeting the gut microbiota in the context of efficacy, acceptability, and adherence.

27VM and VV-M contributed to the conception and design of the manuscript. AR-Z, AS, MF, VV-M, and VM contributed to interpreting the relevant literature. AG compiled and summarized relevant literature. EK drafted and revised the manuscript. UD wrote sections of the manuscript. All authors contributed to manuscript revision, read, and approved the submitted version.

28The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

29All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.