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Model Organisms Facilitate Rare Disease Diagnosis and Therapeutic Research

Michael F Wangler, Shinya Yamamoto, Hsiao-Tuan Chao and 8 more

Genetics · 2017 · Review

doi:10.1534/genetics.117.203067

Abstract

Efforts to identify the genetic underpinnings of rare undiagnosed diseases increasingly involve the use of next-generation sequencing and comparative genomic hybridization methods. These efforts are limited by a lack of knowledge regarding gene function, and an inability to predict the impact of genetic variation on the encoded protein function. Diagnostic challenges posed by undiagnosed diseases have solutions in model organism research, which provides a wealth of detailed biological information. Model organism geneticists are by necessity experts in particular genes, gene families, specific organs, and biological functions. Here, we review the current state of research into undiagnosed diseases, highlighting large efforts in North America and internationally, including the Undiagnosed Diseases Network (UDN) (Supplemental Material, File S1) and UDN International (UDNI), the Centers for Mendelian Genomics (CMG), and the Canadian Rare Diseases Models and Mechanisms Network (RDMM). We discuss how merging human genetics with model organism research guides experimental studies to solve these medical mysteries, gain new insights into disease pathogenesis, and uncover new therapeutic strategies.

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References 155

  1. 1.

    Abul-Husn N. S. Manickam K. Jones L. K. Wright E. A. Hartzel D. N., 2016 Genetic identification of familial hypercholesterolemia within a single U.S. health care system. Science 354: aaf7000.

    Not in our library10.1126/science.aaf7000

  2. 2.

    Afzal A. R. Rajab A. Fenske C. D. Oldridge M. Elanko N., 2000 Recessive Robinow syndrome, allelic to dominant brachydactyly type B, is caused by mutation of ROR2. Nat. Genet. 25: 419–422.

    Not in our library10.1038/78107

  3. 3.

    Albert T. J. Molla M. N. Muzny D. M. Nazareth L. Wheeler D., 2007 Direct selection of human genomic loci by microarray hybridization. Nat. Methods 4: 903–905.

    Not in our library10.1038/nmeth1111

  4. 4.

    Albertson R. C. Cresko W. Detrich H. W. III Postlethwait J. H., 2009 Evolutionary mutant models for human disease. Trends Genet. 25: 74–81.

    Not in our library10.1016/j.tig.2008.11.006

  5. 5.

    Aoyagi K. Rossignol E. Hamdan F. F. Mulcahy B. Xie L., 2015 A gain-of-function mutation in NALCN in a child with intellectual disability, ataxia, and arthrogryposis. Hum. Mutat. 36: 753–757.

    Not in our library10.1002/humu.22797

  6. 6.

    Ashraf S. Gee H. Y. Woerner S. Xie L. X. Vega-Warner V., 2013 ADCK4 mutations promote steroid-resistant nephrotic syndrome through CoQ10 biosynthesis disruption. J. Clin. Invest. 123: 5179–5189.

    Not in our library10.1172/jci69000

  7. 7.

    Auer-Grumbach M. Olschewski A. Papic L. Kremer H. McEntagart M. E., 2010 Alterations in the ankyrin domain of TRPV4 cause congenital distal SMA, scapuloperoneal SMA and HMSN2C. Nat. Genet. 42: 160–164.

    Not in our library10.1038/ng.508

  8. 8.
  9. 9.

    Balter M. Vogel G., 2001 Nobel prize in physiology or medicine. Cycling toward Stockholm. Science 294: 502–503.

    Not in our library10.1126/science.294.5542.502

  10. 10.

    Bamshad M. J. Shendure J. A. Valle D. Hamosh A. Lupski J. R., 2012 The Centers for Mendelian Genomics: a new large-scale initiative to identify the genes underlying rare Mendelian conditions. Am. J. Med. Genet. A. 158A: 1523–1525.

    Not in our library10.1002/ajmg.a.35470

  11. 11.

    Bard F. Casano L. Mallabiabarrena A. Wallace E. Saito K., 2006 Functional genomics reveals genes involved in protein secretion and Golgi organization. Nature 439: 604–607.

    Not in our library10.1038/nature04377

  12. 12.

    Bashamboo A. Donohoue P. A. Vilain E. Rojo S. Calvel P., 2016 A recurrent p.Arg92Trp variant in steroidogenic factor-1 (NR5A1) can act as a molecular switch in human sex development. Hum. Mol. Genet. 25: 3446–3453.

    Not in our library10.1093/hmg/ddw186

  13. 13.

    Baynam G. Broley S. Bauskis A. Pachter N. McKenzie F., 2017 Initiating an undiagnosed diseases program in the Western Australian public health system. Orphanet J. Rare Dis. 12: 83.

    Not in our library10.1186/s13023-017-0619-z

  14. 14.

    Beaulieu C. L. Majewski J. Schwartzentruber J. Samuels M. E. Fernandez B. A., 2014 FORGE Canada Consortium: outcomes of a 2-year national rare-disease gene-discovery project. Am. J. Hum. Genet. 94: 809–817.

    Not in our library10.1016/j.ajhg.2014.05.003

  15. 15.

    Bellen H. J. Yamamoto S., 2015 Morgan’s legacy: fruit flies and the functional annotation of conserved genes. Cell 163: 12–14.

    Not in our library10.1016/j.cell.2015.09.009

  16. 16.

    Bellen H. J. Tong C. Tsuda H., 2010 100 years of Drosophila research and its impact on vertebrate neuroscience: a history lesson for the future. Nat. Rev. Neurosci. 11: 514–522.

    Not in our library10.1038/nrn2839

  17. 17.

    Bilder D. Irvine K. D., 2017 Taking stock of the Drosophila research ecosystem. Genetics 206: 1227–1236.

    Not in our library10.1534/genetics.117.202390

  18. 18.

    Blair D. R. Lyttle C. S. Mortensen J. M. Bearden C. F. Jensen A. B., 2013 A nondegenerate code of deleterious variants in Mendelian loci contributes to complex disease risk. Cell 155: 70–80.

    Not in our library10.1016/j.cell.2013.08.030

  19. 19.

    Boatman S. Barrett F. Satishchandran S. Jing L. Shestopalov I., 2013 Assaying hematopoiesis using zebrafish. Blood Cells Mol. Dis. 51: 271–276.

    Not in our library10.1016/j.bcmd.2013.07.009

  20. 20.

    Bonini N. M. Berger S. L., 2017 The sustained impact of model organisms-in genetics and epigenetics. Genetics 205: 1–4.

    Not in our library10.1534/genetics.116.187864

  21. 21.

    Braasch I. Gehrke A. R. Smith J. J. Kawasaki K. Manousaki T., 2016 The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nat. Genet. 48: 427–437.

    Not in our library10.1038/ng.3526

  22. 22.

    Bunn K. J. Daniel P. Rosken H. S. O’Neill A. C. Cameron-Christie S. R., 2015 Mutations in DVL1 cause an osteosclerotic form of Robinow syndrome. Am. J. Hum. Genet. 96: 623–630.

    Not in our library10.1016/j.ajhg.2015.02.010

  23. 23.

    Buske O. J. Girdea M. Dumitriu S. Gallinger B. Hartley T., 2015 PhenomeCentral: a portal for phenotypic and genotypic matchmaking of patients with rare genetic diseases. Hum. Mutat. 36: 931–940.

    Not in our library10.1002/humu.22851

  24. 24.

    Ceol C. J. Houvras Y. Jane-Valbuena J. Bilodeau S. Orlando D. A., 2011 The histone methyltransferase SETDB1 is recurrently amplified in melanoma and accelerates its onset. Nature 471: 513–517.

    Not in our library10.1038/nature09806

  25. 25.

    Chao H. T. Davids M. Burke E. Pappas J. G. Rosenfeld J. A., 2017 a A syndromic neurodevelopmental disorder caused by de novo variants in EBF3. Am. J. Hum. Genet. 100: 128–137.

    Not in our library10.1016/j.ajhg.2016.11.018

  26. 26.

    Chao H. T. Liu L. Bellen H. J., 2017 b Building dialogues between clinical and biomedical research through cross-species collaborations. Semin. Cell Dev. Biol. pii: S1084–9521(17)30260-4.

    Not in our library10.1016/j.semcdb.2017.05.022

  27. 27.

    Chatzimichali E. A. Brent S. Hutton B. Perrett D. Wright C. F., 2015 Facilitating collaboration in rare genetic disorders through effective matchmaking in DECIPHER. Hum. Mutat. 36: 941–949.

    Not in our library10.1002/humu.22842

  28. 28.

    Chong J. X. Buckingham K. J. Jhangiani S. N. Boehm C. Sobreira N., 2015 The genetic basis of Mendelian phenotypes: discoveries, challenges, and opportunities. Am. J. Hum. Genet. 97: 199–215.

    Not in our library10.1016/j.ajhg.2015.06.009

  29. 29.

    Chong J. X. Caputo V. Phelps I. G. Stella L. Worgan L., 2016 a Recessive inactivating mutations in TBCK, encoding a Rab GTPase-activating protein, cause severe infantile syndromic encephalopathy. Am. J. Hum. Genet. 98: 772–781.

    Not in our library10.1016/j.ajhg.2016.01.016

  30. 30.

    Chong J. X. Yu J. H. Lorentzen P. Park K. M. Jamal S. M., 2016 b Gene discovery for Mendelian conditions via social networking: de novo variants in KDM1A cause developmental delay and distinctive facial features. Genet. Med. 18: 788–795.

    Not in our library10.1038/gim.2015.161

  31. 31.

    Ciani L. Patel A. Allen N. D. ffrench-Constant C., 2003 Mice lacking the giant protocadherin mFAT1 exhibit renal slit junction abnormalities and a partially penetrant cyclopia and anophthalmia phenotype. Mol. Cell. Biol. 23: 3575–3582.

    Not in our library10.1128/mcb.23.10.3575-3582.2003

  32. 32.

    Cosens D. J. Manning A., 1969 Abnormal electroretinogram from a Drosophila mutant. Nature 224: 285–287.

    Not in our library10.1038/224285a0

  33. 33.

    Coventry A. Bull-Otterson L. M. Liu X. Clark A. G. Maxwell T. J., 2010 Deep resequencing reveals excess rare recent variants consistent with explosive population growth. Nat. Commun. 1: 131.

    Not in our library10.1038/ncomms1130

  34. 34.

    Dai J. Cho T. J. Unger S. Lausch E. Nishimura G., 2010 TRPV4-pathy, a novel channelopathy affecting diverse systems. J. Hum. Genet. 55: 400–402.

    Not in our library10.1038/jhg.2010.37

  35. 35.

    Davis E. E. Frangakis S. Katsanis N., 2014 Interpreting human genetic variation with in vivo zebrafish assays. Biochim. Biophys. Acta 1842: 1960–1970.

    Not in our library10.1016/j.bbadis.2014.05.024

  36. 36.

    Deciphering-Developmental-Disorders-Study, 2015 Large-scale discovery of novel genetic causes of developmental disorders. Nature 519: 223–228.

    Not in our library10.1038/nature14135

  37. 37.
  38. 38.

    Deng H. X. Klein C. J. Yan J. Shi Y. Wu Y., 2010 Scapuloperoneal spinal muscular atrophy and CMT2C are allelic disorders caused by alterations in TRPV4. Nat. Genet. 42: 165–169.

    Not in our library10.1038/ng.509

  39. 39.

    Dewey F. E. Murray M. F. Overton J. D. Habegger L. Leader J. B., 2016 Distribution and clinical impact of functional variants in 50,726 whole-exome sequences from the DiscovEHR study. Science 354: aaf6814.

    Not in our library10.1126/science.aaf6814

  40. 40.

    Eberhart J. K. He X. Swartz M. E. Yan Y. L. Song H., 2008 MicroRNA Mirn140 modulates Pdgf signaling during palatogenesis. Nat. Genet. 40: 290–298.

    Not in our library10.1038/ng.82

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