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TheCellMap.org: A Web-Accessible Database for Visualizing and Mining the Global Yeast Genetic Interaction Network
Matej Usaj, Yizhao Tan, Wen Wang and 6 more (opens in a new tab)
G3 Genes|Genomes|Genetics · 2017
doi:10.1534/g3.117.040220 (opens in a new tab)
Abstract
Providing access to quantitative genomic data is key to ensure large-scale data validation and promote new discoveries. TheCellMap.org serves as a central repository for storing and analyzing quantitative genetic interaction data produced by genome-scale Synthetic Genetic Array (SGA) experiments with the budding yeast Saccharomyces cerevisiae. In particular, TheCellMap.org allows users to easily access, visualize, explore, and functionally annotate genetic interactions, or to extract and reorganize subnetworks, using data-driven network layouts in an intuitive and interactive manner.
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References 25
- 1.
Ashburner M. Ball C. A. Blake J. A. Botstein D. Butler H., 2000 Gene ontology: tool for the unification of biology. Nat. Genet. 25: 25–29.
Not in our library10.1038/75556 (opens in a new tab)
- 2.
Atias N. Kupiec M. Sharan R., 2016 Systematic identification and correction of annotation errors in the genetic interaction map of Saccharomyces cerevisiae. Nucleic Acids Res. 44: e50.
Not in our library10.1093/nar/gkv1284 (opens in a new tab)
- 3.
Baryshnikova A., 2016 Systematic functional annotation and visualization of biological networks. Cell Syst. 2: 412–421.
Not in our library10.1016/j.cels.2016.04.014 (opens in a new tab)
- 4.
Baryshnikova A. Costanzo M. Kim Y. Ding H. Koh J., 2010 Quantitative analysis of fitness and genetic interactions in yeast on a genome scale. Nat. Methods 7: 1017–1024.
Not in our library10.1038/nmeth.1534 (opens in a new tab)
- 5.
Ben-Shitrit T. Yosef N. Shemesh K. Sharan R. Ruppin E., 2012 Systematic identification of gene annotation errors in the widely used yeast mutation collections. Nat. Methods 9: 373–378.
Not in our library10.1038/nmeth.1890 (opens in a new tab)
- 6.
Bloom J. S. Ehrenreich I. M. Loo W. T. Lite T. L. Kruglyak L., 2013 Finding the sources of missing heritability in a yeast cross. Nature 494: 234–237.
Not in our library10.1038/nature11867 (opens in a new tab)
- 7.
- 8.
Costanzo M. Baryshnikova A. Bellay J. Kim Y. Spear E. D., 2010 The genetic landscape of a cell. Science 327: 425–431.
Not in our library10.1126/science.1180823 (opens in a new tab)
- 9.
Costanzo M. Baryshnikova A. Myers C. L. Andrews B. Boone C., 2011 Charting the genetic interaction map of a cell. Curr. Opin. Biotechnol. 22: 66–74.
Not in our library10.1016/j.copbio.2010.11.001 (opens in a new tab)
- 10.
Costanzo M. VanderSluis B. Koch E. N. Baryshnikova A. Pons C., 2016 A global genetic interaction network maps a wiring diagram of cellular function. Science 353 Available at: http://science.sciencemag.org/content/353/6306/aaf1420.
Not in our library10.1126/science.aaf1420 (opens in a new tab)
- 11.
Evangelista M. Zigmond S. Boone C., 2003 Formins: signaling effectors for assembly and polarization of actin filaments. J. Cell Sci. 116: 2603–2611.
Not in our library10.1242/jcs.00611 (opens in a new tab)
- 12.
Giaever G. Chu A. M. Ni L. Connelly C. Riles L., 2002 Functional profiling of the Saccharomyces cerevisiae genome. Nature 418: 387–391.
Not in our library10.1038/nature00935 (opens in a new tab)
- 13.
Harris M. A. Clark J. Ireland A. Lomax J. Ashburner M., 2004 The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res. 32: D258–D261.
Not in our library10.1093/nar/gkh036 (opens in a new tab)
- 14.
Hartman J. L. IV Garvik B. Hartwell L., 2001 Principles for the buffering of genetic variation. Science 291: 1001–1004.
Not in our library10.1126/science.1056072 (opens in a new tab)
- 15.
Huh W. K. Falvo J. V. Gerke L. C. Carroll A. S. Howson R. W., 2003 Global analysis of protein localization in budding yeast. Nature 425: 686–691.
Not in our library10.1038/nature02026 (opens in a new tab)
- 16.
Kobourov, S. G., 2012 Spring embedders and force directed graph drawing algorithms. arXiv. Available at: https://arxiv.org/abs/1201.3011.
Not in our library
- 17.
Koh J. L. Chong Y. T. Friesen H. Moses A. Boone C., 2015 CYCLoPs: a comprehensive database constructed from automated analysis of protein abundance and subcellular localization patterns in Saccharomyces cerevisiae. G3 5: 1223–1232.
Not in our library10.1534/g3.115.017830 (opens in a new tab)
- 18.
Kuzmin E. Sharifpoor S. Baryshnikova A. Costanzo M. Myers C. L., 2014 Synthetic genetic array analysis for global mapping of genetic networks in yeast. Methods Mol. Biol. 1205: 143–168.
Not in our library10.1007/978-1-4939-1363-3_10 (opens in a new tab)
- 19.
Mani R. St Onge R. P. Hartman J. L. IV Giaever G. Roth F. P., 2008 Defining genetic interaction. Proc. Natl. Acad. Sci. USA 105: 3461–3466.
Not in our library10.1073/pnas.0712255105 (opens in a new tab)
- 20.
Novick P. Botstein D., 1985 Phenotypic analysis of temperature-sensitive yeast actin mutants. Cell 40: 405–416.
Not in our library10.1016/0092-8674(85)90154-0 (opens in a new tab)
- 21.
Phillips P. C. Otto S. P. Whitlock M. C., 2000 Beyond the average. The evolutionary importance of gene interactions and variability of epistatic effects, Epistasis and the Evolutionary Process, edited by Wolf J. B. Brodie E. D. I. Wade M. J. Oxford University Press, New York.
Not in our library
- 22.
Tong A. H. Evangelista M. Parsons A. B. Xu H. Bader G. D., 2001 Systematic genetic analysis with ordered arrays of yeast deletion mutants. Science 294: 2364–2368.
Not in our library10.1126/science.1065810 (opens in a new tab)
- 23.
Vizeacoumar F. J. Arnold R. Vizeacoumar F. S. Chandrashekhar M. Buzina A., 2013 A negative genetic interaction map in isogenic cancer cell lines reveals cancer cell vulnerabilities. Mol. Syst. Biol. 9: 696.
Not in our library10.1038/msb.2013.54 (opens in a new tab)
- 24.
Winzeler E. A. Shoemaker D. D. Astromoff A. Liang H. Anderson K., 1999 Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 285: 901–906.
Not in our library10.1126/science.285.5429.901 (opens in a new tab)
- 25.
Zuk O. Hechter E. Sunyaev S. R. Lander E. S., 2012 The mystery of missing heritability: genetic interactions create phantom heritability. Proc. Natl. Acad. Sci. USA 109: 1193–1198.
Not in our library10.1073/pnas.1119675109 (opens in a new tab)
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