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Assessing computational methods for transcription factor target gene identification based on ChIP-seq data.

Weronika Sikora-Wohlfeld, Marit Ackermann, Eleni G Christodoulou and 2 more

PLoS Computational Biology · 2013

doi:10.1371/journal.pcbi.1003342

References 34

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ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data · 2010
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Model-based Analysis of ChIP-Seq (MACS) · 2008
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Cited by papers we hold 3

Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data · 2020
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IGF2BP1 promotes SRF-dependent transcription in cancer in a m6A- and miRNA-dependent manner · 2018
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YAP1 Exerts Its Transcriptional Control via TEAD-Mediated Activation of Enhancers · 2015
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