A Deterministic Algorithm for Alpha-Numeric Sequence Comparison with Application to Protein Sequence Detection
A. Kheniche, N. Brahimi, A. Salhi
Journal of Algorithms & Computational Technology · 2015
doi:10.1260/1748-3018.9.3.323 (opens in a new tab)
We email you when a new notice or a question about this paper appears.
Abstract
This paper is an extension of a deterministic algorithm, [1, 2], that was initially designed to measure the rate of similarity between DNA sequences, and any sequences made up with symbols of alphabets of cardinality 4. Here, a modified and extended version to handle sequences of symbols from alphabets of cardinality > 4 is presented. This extension opens up its application area. As a test ground, we search for peptides within a protein database. Computational results on real data and a comparison with BLAST will be discussed.
Abstract licence: CC BY-NC
References21
21 more references, whose wording the paper’s licence keeps private.
Reads
Read by people on this page
None yet.
Checked or read by AI through naulon
None yet.
A person counts once a day per paper. We keep no cookie and no address: a reader is a hash that changes every day. Any month under five reads shows no number.
Are you an author?
Is this your paper?
Claim it to add your note and be paid when agents cite it. Free.