GoMiner: a resource for biological interpretation of genomic and proteomic data

Abstract

We have developed GoMiner, a program package that organizes lists of 'interesting' genes (for example, under- and overexpressed genes from a microarray experiment) for biological interpretation in the context of the Gene Ontology. GoMiner provides quantitative and statistical output files and two useful visualizations. The first is a tree-like structure analogous to that in the AmiGO browser and the second is a compact, dynamically interactive 'directed acyclic graph'. Genes displayed in GoMiner are linked to major public bioinformatics resources.

References 13

1. 1.

   This reference’s wording can’t be shown under the paper’s licence.

   Not in our library

2. 2.

   This reference’s wording can’t be shown under the paper’s licence.

   Not in our library

3. 3.

   This reference’s wording can’t be shown under the paper’s licence.

   Not in our library

4. 4.

   This reference’s wording can’t be shown under the paper’s licence.

   Not in our library

5. 5.

   This reference’s wording can’t be shown under the paper’s licence.

   Not in our library

6. 6.

   This reference’s wording can’t be shown under the paper’s licence.

   Not in our library

7. 7.

   This reference’s wording can’t be shown under the paper’s licence.

   Not in our library

8. 8.

   This reference’s wording can’t be shown under the paper’s licence.

   Not in our library

9. 9.

   This reference’s wording can’t be shown under the paper’s licence.

   Not in our library

10. 10.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library

11. 11.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library

12. 12.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library

13. 13.

    This reference’s wording can’t be shown under the paper’s licence.

    Not in our library

Cited by papers we hold 32

• Recurrent Drought Conditions Enhance the Induction of Drought Stress Memory Genes in Glycine max L. · 2020
  Not checked
• Metascape provides a biologist-oriented resource for the analysis of systems-level datasets · 2019
  No notice
• Identifying significantly impacted pathways: a comprehensive review and assessment · 2019
  Corrected
• Genetic redundancy fuels polygenic adaptation in Drosophila · 2019
  No notice
• Identification of genomic differences among peripheral arterial beds in atherosclerotic and healthy arteries · 2018
  No notice
• The time-resolved transcriptome of C. elegans · 2016
  No notice
• Pathway Analysis: State of the Art · 2015
  No notice
• Aging of blood can be tracked by DNA methylation changes at just three CpG sites · 2014
  No notice
• Proteomic Profiling of Mycobacterium tuberculosis Identifies Nutrient-starvation-responsive Toxin–antitoxin Systems · 2013
  No notice
• Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges · 2012
  No notice
• Gitools: Analysis and Visualisation of Genomic Data Using Interactive Heat-Maps · 2011
  No notice
• A human functional protein interaction network and its application to cancer data analysis · 2010
  No notice
• Gene ontology analysis for RNA-seq: accounting for selection bias · 2010
  No notice
• Glucocorticoids with different chemical structures but similar glucocorticoid receptor potency regulate subsets of common and unique genes in human trabecular meshwork cells · 2009
  Not checked
• DNA Specificity Determinants Associate with Distinct Transcription Factor Functions · 2009
  No notice
• GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists · 2009
  No notice
• Gene Expression Signature of Cigarette Smoking and Its Role in Lung Adenocarcinoma Development and Survival · 2008
  No notice
• FUNC: a package for detecting significant associations between gene sets and ontological annotations · 2007
  No notice
• Toxicogenomic analysis of Caenorhabditis elegans reveals novel genes and pathways involved in the resistance to cadmium toxicity · 2007
  No notice
• Activation of Inflammation/NF-κB Signaling in Infants Born to Arsenic-Exposed Mothers · 2007
  No notice

and 12 more

Reads

A person counts once a day per paper. We keep no cookie and no address: a reader is a hash that changes every day. Any month under five reads shows no number.