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CD4 + T Cells: Differentiation and Functions

Rishi Vishal Luckheeram, Rui Zhou, Asha Devi Verma and 1 more

Clinical and Developmental Immunology · 2012 · Review

doi:10.1155/2012/925135

Abstract

CD4 + T cells are crucial in achieving a regulated effective immune response to pathogens. Naive CD4 + T cells are activated after interaction with antigen-MHC complex and differentiate into specific subtypes depending mainly on the cytokine milieu of the microenvironment. Besides the classical T-helper 1 and T-helper 2, other subsets have been identified, including T-helper 17, regulatory T cell, follicular helper T cell, and T-helper 9, each with a characteristic cytokine profile. For a particular phenotype to be differentiated, a set of cytokine signaling pathways coupled with activation of lineage-specific transcription factors and epigenetic modifications at appropriate genes are required. The effector functions of these cells are mediated by the cytokines secreted by the differentiated cells. This paper will focus on the cytokine-signaling and the network of transcription factors responsible for the differentiation of naive CD4 + T cells.

Full text

From PubMed Central, U.S. National Library of Medicine, as current on Oct 17, 2026. Paragraph numbers are ours, so an answer can point at one.

1. Introduction

The human immune system consists of the ancient innate immune system passed on along the evolution from invertebrates and the recently acquired adaptive immune system uniquely present in vertebrates. The principal functions of the immune system are the recognition with subsequent elimination of foreign antigens, formation of immunologic memory, and development of tolerance to self-antigens. The lymphocyte population is mainly made up of the thymus-derived lymphocytes (T-lymphocytes), bone-marrow-derived (B-lymphocytes), and the natural-killer cells (NK cells). T-lymphocytes mediating the cellular immunity, along with B lymphocytes mediating humoral immunity, provide adaptive immunity, which work in close collaboration with the innate immune system. B-lymphocytes mature in the bone marrow itself, while the T-lymphocytes require the thymus to mature, before being deployed to the peripheral lymphoid organs for further antigen-mediated differentiation. A small subset of the CD4+cells, including natural regulatory cells and natural killer T cells (NKT cells), are already distinct differentiated cells on release from the thymus.

CD4+T cells along with CD8+T cells make up the majority of T-lymphocytes. CD4+T cells after being activated and differentiated into distinct effector subtypes play a major role in mediating immune response through the secretion of specific cytokines. The CD4+T cells carry out multiple functions, ranging from activation of the cells of the innate immune system, B-lymphocytes, cytotoxic T cells, as well as nonimmune cells, and also play critical role in the suppression of immune reaction. Continuing studies identified new subsets of CD4+ cells besides the classical T-helper 1 (Th1) and T-helper 2 (Th2) cells. These include T-helper 17 (Th17), follicular helper T cell (Tfh), induced T-regulatory cells (iTreg), and the regulatory type 1 cells (Tr1) as well as the potentially distinct T-helper 9 (Th9). The differentiation of the different lineages depends on the complex network of specific cytokine signaling and transcription factors followed by epigenetic modifications. This paper will be focusing on the cytokine milieu and lineage specific transcription factors required for the differential development of the antigen-activated CD4+T cells, and also will cover a brief overview of the development pathway of mature naïve CD4+T cells, and finally the effector functions of each subtype will be summarized.

2. Lymphopoiesis

T cells precursors originating from a common lymphoid hematopoietic stem cell leave the bone marrow to reach the thymus for maturation. Initially thought to be an evolutionary remnant with negligible function, the thymus is in fact a primary lymphoid organ indispensable for T-lymphocyte development. The thymus provides a suitable microenvironment with specific combination of stromal cells, cytokines and chemokines to generate functional T cells from T-cell precursors (thymocytes). T-cell receptor (TCR) gene rearrangement and thymocyte selection are the critical steps in the development of mature T-lymphocytes capable of recognizing an infinite range of antigens. During the differentiation process, the migration of thymocytes through discrete thymic microenvironments and contact with peptide-MHC complex (pMHC) on distinct thymic antigen-presenting cells (APCs), including the cortical thymic epithelial cells (cTECs), medullary thymic epithelial cells (mTECs), and dendritic cells (DCs), play a pivotal role in the shaping of the T cell repertoire for antigen recognition, the selection process, and the expression of surface molecules such as CD4 and CD8. The selection process can be depicted by the affinity model, whereby the thymocytes expressing TCR with negligible affinity to pMHC die and those with very high affinity are destroyed (negative selection). Only thymocytes with TCR of intermediate affinity to pMHC undergo positive selection and further differentiation into mainly CD4+ and CD8+ mature T-lymphocytes. TCR consists of αβ or γδ chains bonded with five CD3 subunits (γ, δ, μ, π, and Σ). TCR interacts with antigen-MHC complex, while CD3 mediates T-cell activation signals. TCR α chain is encoded on chromosome 14 and consists of V (variable) and J (joining) genes. The β chain genes are located on the 7 chromosome with V, J, and D (diversity) gene segments. The γ chain is on chromosome 7, and the δ chain on chromosome 14. A vast repertoire of TCR αβ is generated by gene rearrangement between exons of the variable domains of the V-J segments of α chain and V-D-J segments of β chain. Moreover junctional diversity V-N-J, V-N-D, and D-N-J are produced by random insertions/deletions at these regions. The diversity is expressed in the complementary determining regions (CDRs), that make up the antigen-recognition site of the TCR. The T-cell precursor, that is the double positive CD4+CD8+ thymocyte, differentiates into several mature T cell lineage. Based on the interaction of CD4+CD8+ cell TCR with pMHC I or II, some nonconventional lineages are also produced along with the classical naïve CD4+CD8-T cells and CD4−CD8+ T cells. The CD4+ expressing non-conventional T cells include the FOXP3+CD4+CD25+ natural T-regulatory cells (nTreg cells), and the CD1d-reactive natural killer T (NKT) cells, whereas the CD8+ ones are the MHC1b CD8+T cells, and the major histocompatibility molecule-related 1(MR1)-restricted mucosa-associated invariant T cells. The NKT cells can be CD4+ or CD4−CD8−. Mature naïve CD4+ T cells are then deployed to secondary lymphoid organs, including the spleen, lymph nodes, and the mucosa-associated lymphoid tissue, where they constantly survey for pMHC II molecules, for antigen recognition.

3. CD4+T Cells Activation and Differentiation

The initial step of differentiation of the naïve cells is the antigenic stimulation as a result of interaction of TCR and CD4 as co-receptor with antigen-MHC II complex, presented by professional antigen presenting cells (APCs). TCR coupled with CD3 activation consequently induces a network of downstream signaling pathways, that eventually lead to naïve cell proliferation and differentiation into specific effector cells. Lineage-specific differentiation depends on the cytokine milieu of the microenvironment, as well as on the concentration of antigens, type of APCs, and costimulatory molecules. Among the APCs, the dendritic cells (DCs) are considered to be most important due to their enhanced ability to stimulate naïve T cells. Dendritic cells are activated through the recognition of pathogenic antigens by cell surface pattern recognition receptors, such as toll-like receptor and intracellular pathogen sensing receptors such as the nucleotide oligomerization domain (NOD)-like receptors. DCs consist of different subsets which interfere with the differentiation lineage. In mice, CD8α + DC were involved with Th1 lineage, while the CD8α − subsets were linked to Th2 differentiation, through the secretion of IL-12 and IL-6, respectively. Costimulatory signals augment TCR signals, thereby promoting proliferation and differentiation. The main co-stimulatory receptor is CD28, which is expressed in all naïve T cells. The ligands of CD28 on the DC are the CD80 (B7-1) and CD86 (B7-2), which are upregulated upon activation of DC. Other less potent co-stimulatory molecules include CD28 homolog inducible co-stimulator (ICOS), members of TNF receptor family (CD27, 4-1BB, and OX-40). These receptors have their ligands expressed on DC. The initial source of cytokines are from the APCs as well as other members of the innate immune cells. Subsequently, some of the cytokines produced by the differentiating cells can create a positive feedback loop, whereby the differentiation and response are marginally enhanced.

3.1. Th1 Differentiation

Interleukin 12 (IL12) and interferon γ (IFNγ) are the critical cytokines initiating the downstream signaling cascade to develop Th1 cells. IL12 is secreted in large amounts by APCs after their activation through the pattern recognition receptors. The IL12, in turn, induces natural killer cells(NK) to produce IFNγ.

Several transcription factors in coordination induce full differentiation of the Th1 cells (Table 1). The master regulator for Th1 differentiation, the T-box transcription factor (T-bet), is defined not only by its ability to activate the set of genes to promote differentiation of a particular phenotype, but also by that of being able to suppress the development of opposing cell lineages. T-bet is the principal transcription factor, as it significantly enhances the production of IFNγ, and plays important role in suppressing the development of Th2 and Th17. T-bet expression was found to be strongly dependent on signal transducer and activator of transcription 1 (STAT1), rather than on IL12–dependent STAT4. STAT1, is in turn activated by IFNγ. T-bet further induces IFNγ production by the differentiating cells, thereby amplifying T-bet expression and upregulating the expression of IL12Rβ2. The latter cells can then be selected by the abundant IL12 from the APCs, thus ensuring selective expansion of the differentiating Th1 cells. T-bet suppresses development of Th2 cell by inhibiting the crucial IL4 gene and impairing the function of the Th2 master regulator GATA3. Th17 lineage is inhibited by the interaction of T-bet with Rorc promoter, which encodes RORγt, the principal transcription factor of Th17.

IL12-induced STAT4 is another important transcription factor involved in the Th1 cell differentiation. STAT4 induces IFNγ production, thereby creating a positive feedback loop for further T-bet and IL12Rβ2 expression. STAT4 and T-bet are involved directly in the transcription of IFNγ locus through the creation of activating marks at the locus, while STAT6 and GATA3 in Th2 differentiation establish repressive histone marks at the said locus, thereby indicating that the activation of IFNγ locus dictates Th1 differentiation. However, STAT4 and T-bet do not function in a linear way in the differentiation of Th1 cell, with each having their unique signaling pathway. But for complete Th1 cell differentiation, these-lineage specific transcription factors need to operate in coordination with one another. In later stages of differentiation, IL12/STAT4 pathway upregulates IL-18Rα. IL12 along with IL18 induces IFNγ production independent of TCR activation, thus creating a pathway for enhancing Th1 response.

Runt-related transcription factors also participate in the differentiation process. Runx1 and Runx3 were found to promote Th1 cell differentiation. Runx3, in coordination with T-bet, binds to the IFNγ promoter and silences the genes encoding IL4, leading to the Th1 lineage differentiation. Moreover, Runx3, through interaction with GATA3, leads to the inhibition of Th2 differentiation. Runx1 together with T-bet inhibits Th17 development by interfering with the RORγt master regulator.

Recent studies identified a novel role of T-bet as a transcriptional repressor. T-bet through the induction of transcriptional repressor, Bcl-6, represses the activity of IFNγ locus in later stages of Th1 differentiation, with the consequence of reducing the overproduction of IFNγ and hence acts as a protective mechanism to avoid immunopathology.

Eomesodermin (Eomes), also a member of the T-box gene family, is important in regulating CD8+ cells development and functions, and also plays a role in the Th1 lineage commitment. IL 21 represses Eomes expression. Exposure of naïve cell to IL21 led to the reduction of IFNγ production by the developing Th1 cells.

Hlx, another transcription factor induced downstream to T-bet activation, has been found to enhance IFNγ production by Th1 cells.

3.2. Th2 Differentiation

IL4 and IL2 are critical for Th2 differentiation. The major transcription factor involved in Th2 lineage differentiation includes the IL4-induced STAT6, which upregulates the expression of the master regulator GATA3 (GATA-binding protein). 3 distinct mechanisms of GATA3 involvement in Th2 differentiation have been postulated, including enhanced Th2 cytokine production, selective proliferation of Th2 cells through recruitment of Gfi-1, and inhibition of Th1 differentiation presumably by interacting with T-bet. Moreover, GATA3 was found to suppress Th1 differentiation by downregulating STAT4. In vivo, GATA3 is indispensable for Th2 response. In GATA3 deficient mice, differentiation of naïve cells was diverted towards the Th1 lineage. Absence of GATA3 leads to the interruption of Th2 differentiation. Recent studies showed that GATA3 by itself cannot regulate all the Th2-specific genes, but instead needed the collaboration of STAT6. Although IL4 and IL2 are required for Th2 cells development in vitro, there is evidence of IL4-independent Th2 differentiation in vivo. But since GATA3 is indispensable for Th2 cells differentiation in vivo, it can be suggested that there exist an IL4-independent GATA3 activation pathway. Continuing researches showed that Th2 cell differentiation involves several other transcriptional factors activated downstream to several cytokines, including IL2, IL6, and IL21.

STAT5 has an important role in the Th2 lineage commitment. It is readily activated by IL2. STAT5 activation is independent of IL4 signaling and does not induce GATA3 expression. For full differentiation of Th2 cells, the coordinated activity of STAT5 and GATA3 is required, since GATA3 alone cannot induce the production of IL4. This is due to the fact that GATA3 and STAT5 bind to different sites of the IL4 locus. GATA-3 binds to DNaseI hypersensitive site Va and CNS-1 sites of the IL4/IL13 loci, while STAT5 binds to the DNase I hypersensitive sites (HSII and HSIII) in the second intron of the IL4 locus.

Recent studies identified the role of STAT3 in Th2 differentiation. STAT3 is required by STAT6 for interaction with relevant gene loci in the developing T cells. It was found that in the absence of STAT3, STAT6 was normally activated, but its interaction with loci was impaired, suggesting the role of STAT3 as a mediator to access to the loci. In STAT3 deficient mice, allergic inflammation was aborted, thereby proving the importance of its presence for the proper development of Th2 cells.

IL6, abundantly produced by APCs as well as by nonimmune cells, plays a dual role in Th2 lineage differentiation. It promotes Th2 differentiation, while simultaneously inhibiting the Th1 lineage. The downstream signaling pathway of IL6, in favor of Th2 differentiation, is IL4-dependent. IL6 enhances IL4 production by naïve CD4+ cells, through the upregulation of nuclear factor of activated T cells (NFAT). Then IL4 signaling pathway ensures the differentiation as described above. The inhibition of the Th1 development occurs through the IL6-induced upregulation of suppressor of cytokine signaling-1 (SOCS-1) expression, which interferes with STAT1 activation downstream to IFNγ signaling.

Growth factor independent-1 (Gfi-1) is a transcription repressor, induced by the IL4/STAT6 pathway, as well as by TCR signaling alone. It promotes Th2 cell expansion by selectively enhancing proliferation of GATA3-high cells. In Gfi-1 deficient mice, Th2 cell expansion was significantly reduced. c-Maf selectively upregulates IL4 gene transcription and consequently promotes Th2 cell differentiation by IL4-dependent mechanism. However, c-Maf is not involved in the production of other Th2 cytokines, except for IL4. Interferon regulatory factor 4 (IRF4) is another transcription factor useful in the lineage specific differentiation of Th2. It coordinates with nuclear factor of activated T cells 2 (NFATc2) to activate IL4 promoter. It has been shown that in the absence of IRF4, IL4 could not induce Th2 differentiation, and GATA3 could not be upregulated despite IL4 treatment. However, the fact that over expression of GATA3 restored Th2 differentiation pathway, one may conclude that IRF4 upregulates GATA3.

3.3. Th9 Cells

Initially characterized as a subset of Th2 cells, ongoing researches tend to classify IL9 secreting-Th9 cells as a distinct subset of CD4+ T cells. TGF-β was found to divert the differentiation of Th2 towards the development of Th9 cells. Moreover, TGF-β in combination with IL 4 directly induces the differentiation of Th9 cells. IRF4 also plays an important role. IRF4 was found to directly bind to the IL9 promoter. However, more research need to be conducted to get more insights about the Th9 cells, before being classified as a distinct lineage of CD4+ cells.

3.4. Th17 Cells Differentiation

IL6, IL21, IL23, and TGF-β are the major signaling cytokines involved in Th17 cells differentiation, and retinoic acid receptor-related orphan receptor gamma-T (RORγt) is the master regulator. The differentiation process can be split into 3 stages, including the differentiation stage mediated by TGF-β and IL6, the self-amplification stage by IL21, and the stabilization stage by IL23.

TGF-β is the critical signaling cytokine in Th17 differentiation. However, TGF-β signaling pathways also play significant role in the development of iTreg. Th17 and iTreg are antagonistically related. TGF-β alone, at high concentration, can divert lineage differentiation towards iTreg development, through the induction of FOXP3. However, at low concentration and in the presence of IL6, TGF-β induces Th17 differentiation, production of IL21 and upregulates expression of IL23R. Since TGF-β signaling,unlike IL6, IL21, and IL23, does not activate STAT3, its role appears to involve in the enhancement of STAT3 activation. TGF-β inhibits IL6/IL21-induced expression of suppressor of cytokine signaling 3 (SOCS3), which negatively regulates STAT3 signaling pathways. Downstream TGF-β signaling pathway in the presence of IL6 leads to the activation of RORγt. Forced expression of RORγt induces the production of IL-17A and IL-17F. Besides the master regulator RORγt, several other transcription factors need to collaborate for full differentiation of Th17 cells. As such, deficiency of RORγt does not lead to complete interruption of Th17 cytokine expression.

STAT3, activated downstream to IL6, IL21, IL23 signaling plays an important role in the differentiation process. It induces RORγt expression. STAT3 deficiency was found to cause enhanced expression of T-bet and FOXP3, which are involved in the development of opposing cell lineages. STAT3 binds to IL-17A and IL-17F promoters.

RORα, another member of the ROR family, also participates in the lineage commitment pathway. Together RORα and RORγt synergistically enhance Th17 differentiation, and their absence completely aborted the development of Th17 cells.

Runx1 also influences Th17 differentiation. Runx1 through the induction of RORγt, promotes differentiation. However, Runx1/FOXP3 interaction negatively regulates Th17 development. Moreover, T-bet in collaboration with Runx1 leads to the interruption of Runx1-mediated transactivation of Rorc, thereby suppressing Th17 development.

Aryl hydrocarbon receptor (AHR), a ligand-dependent transcription factor, was found to promote Th17 differentiation, presumably through the inhibition of STAT1 and STAT5, which negatively regulate Th17 development. However, its absence did not cause complete abortion of Th17 differentiation, but was associated with inability to produce IL22. Recently identified, activator protein (AP-1) transcription factor, Batf, also plays an important role in the differentiation process. Batf(−/−) mice had defective Th17 response, but Th1 and Th2 development was unaffected. IRF4 was found to be important not only in the differentiation of Th2, but also in that of Th17. Irf4(−/−)mice failed to enhance expression of RORγt and subsequently did not develop experimental autoimmune encephalitis as a result of impaired Th17 response. IRF4 activity is negatively regulated by IRF4 binding protein (IBP), leading to a control of IL17 and IL21 production. Overproduction of the latter cytokines is associated with the development of multiple autoimmune diseases. Mice with deficiency of IBP, rapidly developed rheumatoid arthritis-like joint disease and vasculitis.

The self-amplification phase is a crucial step in the differentiation process. It is required in order to mount a robust immune response. Unlike Th1 and Th2 differentiation mechanisms, where their respective major cytokine IFNγ and IL4 act as amplifying cytokines, the main cytokine IL17 of Th17 cell does not amplify its differentiation. Instead it is IL21, produced in significant amount by Th17, that in collaboration with TGF-β amplify Th17 differentiation. This phase does not require IL6, thereby creating a TCR-independent mechanism of differentiation.

The third phase is conducted by IL23, mainly produced by APCs. IL23 is principally required for expansion and maintenance of the Th17 population. IL6 and IL21 downstream signaling induces the expression of IL23R on Th17 cell surface. Moreover IL23 has been shown to induce its own receptor independently. Although thought to be unable to induce Th17 differentiation, recently IL23 in association with IL-1β was shown to induce the development of T-bet+RORγt+Th17 cells independent of TGF-β.

3.5. Regulatory Cells Differentiation

iTreg cells are FOXP3+CD4+CD25+ cells, which are developed in the peripheral lymphoid organs after antigen priming, in contrast to the natural Treg (nTreg) which are released from the thymus as a distinct lineage with FOXP3 already expressed. TGF-β is the critical cytokine responsible for the initiation of the iTreg cell lineage commitment. Forkhead transcription factor FOXP3 is specifically expressed in CD4+CD25+Treg cells and is the major lineage-specific transcription factor involved in iTreg differentiation. FOXP3 is induced downstream to TGF-β signaling, after interaction with TCR. Fatal immunopathology followed as a result of FOXP3 deletion/mutation, which resulted in defective and decreased iTreg cells. As with the differentiation of the other subsets of CD4+ cells, FOXP3 along with other transcription factors is needed for full differentiation of the iTreg cells.

Smad2 and Smad3, which are also activated through TGF-β signaling pathways, are involved in the iTreg differentiation process by inducing FOXP3. Moreover, Smad 2 and Smad 3 were also found to induce differentiation via FOXP3-independent pathway. Smad3 can differentially enhance iTreg development by upregulating FOXP3 expression and inhibit Th17 differentiation by blocking RORγt.

STAT5-induced downstream to IL2 signaling is required for the differentiation of iTreg. STAT5 was found to enhance FOXP3 expression and subsequently downstream to FOXP3 signaling and promote iTreg development. STAT5 and STAT3, which bind to multiple common sites across the IL17 locus, function closely and antagonize each other. Activation of STAT5 by IL2 signaling impair STAT3 binding to the locus sites and consequently enhance iTreg differentiation. Conversely, defective IL2-STAT5 signaling suppresses iTreg, and thus Th17 pathway is favored.

NFAT through interaction with FOXP3 promoted Th17 differentiation. Impaired interaction of mutated FOXP3 gene and NFAT led to decreased expression of Treg markers-CTLA4 and CD25.

Among the regulatory cells,Tr1 is being extensively studied. These IL10-producing cells play important role in suppressing inflammation and autoimmune processes. IL27 and IL10 are the principal cytokines involved in driving the Tr1 cells differentiation. IL10 signaling pathways in the induction of the differentiation remains to be elucidated. IL27 signaling leads to the activation of three key factors required for the differentiation. They include the transcription factor c-Maf, IL21, and the costimulatory receptor ICOS. c-Maf is the main factor, whose activation leads to enhanced production of IL21. IL21 acts as an autocrine growth factor driving the expansion of Tr1 cells. ICOS promotes the IL27-induced differentiation of Tr1. Recently, Aryl hydrocarbon receptor (AhR), also induced by IL27, was found to be important in the differentiation of Tr1 cells. AhR and c-Maf act synergistically to mediate the differentiation.

3.6. Follicular Helper (Tfh) T Cells

Tfh are C-X-C motif receptor-5 (CXCR 5+) expressing cells and are located in follicular areas of lymphoid tissue, where they participate in the development of antigen-specific B-cell immunity. IL6 and IL21 are the main cytokines involved in the differentiation process. STAT3, activated downstream to cytokine signaling, is an important transcription factor of Tfh. However, unlike in Th17 development, TGFβ does not participate, and RORγt is not induced. In vitro, IL21 in the absence of TGFβ resulted in Tfh differentiation. Inducible costimulator (ICOS), member of CD28 family, is also required for Tfh development. In mice with ICOSL deficiency, Tfh differentiation was downregulated. More recently Bcl6, a transcription factor selectively expressed in Tfh, was found to play important role in the differentiation. It is activated downstream to IL6 and IL21 signaling, and its overexpression induced Tfh differentiation, while inhibiting opposing cell lineages.

4. Plasticity of CD4+ Cells

Unlike Th1 and Th2 cells, which are considered to be terminally differentiated, Th17 and Treg have shown plasticity, thereby suggesting that they are not terminally differentiated (Figure 1). However, recent studies found that even Th2 cells exhibit plasticity. TGF-β caused Th2 cells to switch their characteristic cytokine profile into a IL9 predominating one, suggesting the conversion into Th9 cells. Th17 in the presence of IL12 switched to Th1 phenotype, and interaction with IL4 led to the differentiation into Th2 cells. Treg showed tendency to convert to Th17 and Tfh. In the presence of IL 6, CD4+CD25+FoxP3+ cells upon activation reprogrammed into Th17. FoxP3+Treg in Peyer's patches differentiated into Tfh, with subsequent interaction with B cells and production of Ig A. IRF4 inactivation in Foxp3+ cells resulted in Th2 development and increased germinal centre formation.

5.1. Th1 Cells

Th1 cells are involved with the elimination of intracellular pathogens and are associated with organ-specific autoimmunity. They mainly secrete IFNγ, lymphotoxin α (Lfα), and IL2. IFNγ is essential for the activation of mononuclear phagocytes, including macrophages, microglial cells, thereby resulting in enhanced phagocytic activity. IFNγ is believed to exert its effect through the activation of IFNγ-responsive genes, which account for more than 200. One of the well studied is the gene encoding IFNγ-inducible GTP-binding protein (IGTP). IGTP is a member of p47 GTPase family also known as IRG family, is strongly induced by IFNγ, and induces the elimination of intracellular pathogens. Lfα is a member of the TNF super family. Lfα is associated with autoimmune diseases. The depletion of Lfα has shown to inhibit the development of experimental autoimmune encephalitis. IL2 promotes proliferation of CD8+T cells with acquisition of cytolytic phenotype. Besides its role as T cell growth factor, IL2 was also found to promote the development of CD8+ memory cells after antigen priming, and thus participating in ensuring a robust secondary immune response. Natural Treg (thymus derived) need IL2 for survival and activation. Downstream IL2 signaling leads to the activation of STAT5 and eventually to enhanced expression of FOXP3 in naïve cells, thereby acquiring potent suppressive ability.

5.2. Th2 Cells

Th2 cells mount immune response to extracellular parasites, including helminthes, and play major role in induction and persistence of asthma as well as other allergic diseases. The key effector-cytokines include IL4, IL5, IL9, IL13, IL10, IL25, and amphiregulin. IL4 is a major cytokine involved in allergic inflammation. It is involved in IgE switching and secretion by B cells. IL4 also upregulates low-affinity IgE receptor (FcεRI) on B-lymphocytes and mononuclear phagocytes, and also high-affinity IgE receptor (FcεRII) on mast cells and basophils, with subsequent degranulation of the cells and release of several active metabolites, including histamine and serotonin. IL4 also induces the increase of several other proinflammatory mediators, including IL6, GM-CSF (granulocyte-macrophage colony-stimulating factor), VCAM-I adhesion molecule. IL5 mainly targets eosinophils and its precursors, since these cells have relatively higher amounts of IL5R expressed on their surface, and subsequently leads to their activation with upregulation of CD11b and inhibition of apoptosis. IL9 participates actively in the immunopathogenesis of asthma. It activates the function of several cells, including mast cells, B cells, eosinophils, neutrophils as well as airway epithelial cells. Along with hypersecretion of mucus, IL9 was found to release chemoattractant factors, leading to allergic airway inflammation. One of IL13 main roles is to combat gastrointestinal helminthes. IL13, through the activation of cell-mediated immunity, helps in the elimination of intracellular pathogens, such as Leishmania. It also plays a major role in the induction of allergic asthma, through activation of eosinophils, enhanced mucus secretion, and airway hyperresponsivity. Potent stimulation of tissue fibrosis at sites of inflammation was also associated with IL13. IL10 is an anti-inflammatory cytokine. After pathogen clearance in the course of an immune response, IL10 helps achieve homeostasis through the inhibition of Th1 cells as well as other immune cells of the innate system. IL25, previously known as IL17E, is a member of the IL17 family of cytokines. It is structurally similar to IL17, but functionally different. It promotes Th2 responses. It induces increased mucus production, eosinophilia, IgE switching, and enhanced Ig secretion, as a result of upregulation of IL4, IL5, and IL13, thereby amplifying aTh2 response. It was found to induce pathologies of lungs and digestive tract, due to enhanced expression of IL13. Novel role of IL25 was identified to be the suppression of Th17 response, and consequently the regulation of the development of autoimmune disease. In IL25(−/−) mice, the susceptibility to acquire experimental autoimmune encephalitis was found to be significantly raised, and disease course was accelerated. IL25 suppressed Th17 response by increasing the expression of IL13, which directly inhibit production of cytokines required for development Th17, including IL23, IL1β, and IL6 by activated dendritic cells. Moreover, IL25(−/−) mice failed to expel helminthes Nippostrongylus brasiliensis, thereby indicating a poor Th2 response. Amphiregulin is a member of the epidermal growth factor (EGF) family. It directly induces epithelial cell proliferation. Its deficiency was associated with delayed expulsion of nematode Trichuris muris. The Th9 cell secretes large quantities of IL9, with effects as stated above. At present, Th9 cells are viewed as major culprits in the the development of allergic pathologies, especially asthma.

5.3. Th17 Cells

Th17 is responsible to mount immune response against extracellular bacteria and fungi. They are also involved in the generation of autoimmune diseases. The key effector cytokines include IL17A, IL17F, IL21, and IL22. IL17A and IL17F signaling occurs through a common receptor, IL17RA, thereby suggesting similar functions. Since the receptor IL17RA is expressed in multiple tissues, such as hematopoietic tissue, skin, lung, intestine, and joints, the effect of IL17 extends beyond T cell-mediated inflammatory response. IL17 leads to the induction of proinflammatory cytokines, including IL6, IL1, TNFα, and also proinflammatory chemokines ensuring the chemotaxis of inflammatory cells to sites of inflammation. IL21, along being an amplifying cytokine for TH17 development, has pleiotropic functions, including activating T cells, inducing B cells to differentiate into plasmocytes and memory cells, and activating NK cells. IL22 is known to mediate both inflammatory response and exhibits tissue protective properties. IL22 participates actively in mucosal host defense against bacterial pathogens, by inducing antimicrobial peptides and increasing cell proliferation. In acute liver disease, IL22 was shown to be involved in limiting liver tissue damage.

5.4. Regulatory CD4+T Cells

Treg exists as natural thymus-derived subset with expressed FOXP3, and as peripheral-induced Treg cells, which arise from naïve CD4+CD25-cells after antigen priming in a relevant cytokine milieu. Treg and Tr1 play important role in the maintenance of immunologic tolerance to self and foreign antigen. After clearance of pathogens, they negatively regulate the immune response, thereby protecting against immunopathology. Their main effector cytokines include IL10, TGF-β, and IL35. IL10 is a potent inhibitory cytokine, with the ability to suppress proinflammatory response and thus limits tissue damage by the inflammatory process. IL10 and TGF-β potently suppress IgE production, thereby showing their important role in attenuating allergic inflammation. Mice with T-cell-specific deletion of Tgfb1 gene, developed fulminant immunopathology as a result of uncontrolled differentiation of proinflammatory T cells, and hence showing the relevance of TGF-β in regulating immune response.

5.5. Follicular Helper (Tfh) T Cells

After TCR interaction and subsequent differentiation from the CXCR5−CCR7+CD4+ naïve cells, these CXCR5+CD4+T (Tfh) cells play significant role in mediating humoral immunity through interaction with B-lymphocytes. After having lost CCR7, the differentiated CXCR5+CCR7-pMHCII-specific Tfh cells enter the pregerminal centre for initial interaction with antigen-primed B cell, with subsequent differentiation of the B cells into Ig-producing plasma cells. In the germinal area, they are involved in the development of long-live B memory cells. According to the predominant cytokine secreted, Tfh cells have been classified into Tfh1, Tfh2, and Tfh10. Tfh1 by secreting IFNγ promotes IgG2a production. Tfh2 secretes IL4, which favors the production of IgG1 and IgE. Tfh10 through the secretion of IL10, promotes IgA secretion.

6. Conclusion

Clearly the CD4+T cells represent a unique branch of the adaptive immune system that is crucial in achieving a regulated effective immune response to pathogens, and their proper functioning is vital for survival. Through their distinct phenotypes with their respective cytokine profile, they modulate the functions of the innate immune cells as well as the members of the adaptive immune system. During the recent years, subsets with more specialized and more defined properties have been identified, such as the Tfh and Th9, thereby reinforcing their control over the immune system. Thanks to new technologies, more will be learned about the epigenetic modifications that occur during the differentiation process, and hence we will gain more insights in their development, which will prove useful for later clinical use. Once considered terminally differentiated after antigen-mediated activation, recent studies have been showing the plasticity of the different subsets, particularly the Treg and Th17 cells. This plasticity makes the potential use of Treg risky in autoimmune diseases and organ transplant, since the Treg cells can reprogram into proinflammatory phenotypes in the presence of relevant cytokine milieu and cause more harm. Moreover, aberrantly functioning CD4+ cells are associated with the development of multiple autoimmune and allergic pathologies. More research will bring new insights about the epigenetic program of the current and probably novel subsets of CD4+T cells and their mechanism and means of functioning, thus subsequently becoming a valuable asset, which clinicians can use against immune-mediated diseases.

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    Not in our library10.1034/j.1600-065x.2003.00077.x

  3. 3.

    Takahama Y. Journey through the thymus: stromal guides for T-cell development and selection. Nature Reviews Immunology. 2006;6(2):127-135.

    Not in our library10.1038/nri1781

  4. 4.

    Daniels MA, Teixeiro E, Gill J, et al. Thymic selection threshold defined by compartmentalization of Ras/MAPK signalling. Nature. 2006;444(7120):724-729.

    Not in our library10.1038/nature05269

  5. 5.

    Rudolph MG, Stanfield RL, Wilson IA. How TCRs bind MHCs, peptides, and coreceptors. Annual Review of Immunology. 2006;24:419-466.

    Not in our library10.1146/annurev.immunol.23.021704.115658

  6. 6.

    Starr TK, Jameson SC, Hogquist KA. Positive and negative selection of T cells. Annual Review of Immunology. 2003;21:139-176.

    Not in our library10.1146/annurev.immunol.21.120601.141107

  7. 7.

    Cabaniols JP, Fazilleau N, Casrouge A, Kourilsky P, Kanellopoulos JM. Most α/β T cell receptor diversity is due to terminal deoxynucleotidyl transferase. Journal of Experimental Medicine. 2001;194(9):1385-1390.

    Not in our library10.1084/jem.194.9.1385

  8. 8.

    Rock EP, Sibbald PR, Davis MM, Chien YH. CDR3 length in antigen-specific immune receptors. Journal of Experimental Medicine. 1994;179(1):323-328.

    Not in our library10.1084/jem.179.1.323

  9. 9.

    Treiner E, Lantz O. CD1d- and MR1-restricted invariant T cells: of mice and men. Current Opinion in Immunology. 2006;18(5):519-526.

    Not in our library10.1016/j.coi.2006.07.001

  10. 10.

    Drayton DL, Liao S, Mounzer RH, Ruddle NH. Lymphoid organ development: from ontogeny to neogenesis. Nature Immunology. 2006;7(4):344-353.

    Not in our library10.1038/ni1330

  11. 11.

    Ashkar S, Weber GF, Panoutsakopoulou V, et al. Eta-1 (osteopontin): an early component of type-1 (cell-mediated) immunity. Science. 2000;287(5454):860-864.

    Not in our library10.1126/science.287.5454.860

  12. 12.

    Tao X, Constant S, Jorritsma P, Bottomly K. Strength of TCR Signal Determines the Costimulatory Requirements for Th1 and Th2 CD4+ T Cell Differentiation. Journal of Immunology. 1997;159(12):5956-5963.

    Not in our library

  13. 13.

    Jenkins MK, Khoruts A, Ingulli E, et al. In vivo activation of antigen-specific CD4 T cells. Annual Review of Immunology. 2001;19:23-45.

    Not in our library10.1146/annurev.immunol.19.1.23

  14. 14.

    Steinman RM, Hawiger D, Nussenzweig MC. Tolerogenic dendritic cells. Annual Review of Immunology. 2003;21:685-711.

    Not in our library10.1146/annurev.immunol.21.120601.141040

  15. 15.

    Iwasaki A, Medzhitov R. Toll-like receptor control of the adaptive immune responses. Nature Immunology. 2004;5(10):987-995.

    Not in our library10.1038/ni1112

  16. 16.

    Kohu K, Ohmori H, Wong WF, et al. The Runx3 transcription factor augments Th1 and down-modulates Th2 Phenotypes by interacting with and attenuating GATA3. Journal of Immunology. 2009;183(12):7817-7824.

    Not in our library10.4049/jimmunol.0802527

  17. 17.

    Greenwald RJ, Freeman GJ, Sharpe AH. The B7 family revisited. Annual Review of Immunology. 2005;23:515-548.

    Not in our library10.1146/annurev.immunol.23.021704.115611

  18. 18.

    Croft M. The role of TNF superfamily members in T-cell function and diseases. Nature Reviews Immunology. 2009;9(4):271-285.

    Not in our library10.1038/nri2526

  19. 19.

    Trinchieri G, Pflanz S, Kastelein RA. The IL-12 family of heterodimeric cytokines: new players in the regulation of T cell responses. Immunity. 2003;19(5):641-644.

    Not in our library10.1016/s1074-7613(03)00296-6

  20. 20.

    Trinchieri G, Sher A. Cooperation of Toll-like receptor signals in innate immune defence. Nature Reviews Immunology. 2007;7(3):179-190.

    Not in our library10.1038/nri2038

  21. 21.

    Afkarian M, Sedy JR, Yang J, et al. T-bet is a STATI-induced regulator for IL-12R expression in naïve CD4+ T cells. Nature Immunology. 2002;3(6):549-557.

    Not in our library10.1038/ni794

  22. 22.

    Lugo-Villarino G, Maldonado-López R, Possemato R, Peñaranda C, Glimcher LH. T-bet is required for optimal production of IFN-γ and antigen-specific T cell activation by dendritic cells. Proceedings of the National Academy of Sciences of the United States of America. 2003;100(13):7749-7754.

    Not in our library10.1073/pnas.1332767100

  23. 23.

    Lazarevic V, Chen X, Shim JH, et al. T-bet represses TH 17 differentiation by preventing Runx1-mediated activation of the gene encoding RORγt. Nature Immunology. 2011;12(1):96-104.

    Not in our library10.1038/ni.1969

  24. 24.

    Lighvani AA, Frucht DM, Jankovic D, et al. T-bet is rapidly induced by interferon-γ in lymphoid and myeloid cells. Proceedings of the National Academy of Sciences of the United States of America. 2001;98(26):15137-15142.

    Not in our library10.1073/pnas.261570598

  25. 25.

    Djuretic IM, Levanon D, Negreanu V, Groner Y, Rao A, Ansel KM. Transcription factors T-bet and Runx3 cooperate to activate Ifng and silence Il4 in T helper type 1 cells. Nature Immunology. 2007;8(2):145-153.

    Not in our library10.1038/ni1424

  26. 26.

    Hwang ES, Szabo SJ, Schwartzberg PL, Glimcher LH. T helper cell fate specified by kinase-mediated interaction of T-bet with GATA-3. Science. 2005;307(5708):430-433.

    Not in our library10.1126/science.1103336

  27. 27.

    Thierfelder WE, Van Deursen JM, Yamamoto K, et al. Requirement for Stat4 in interleukin-12-mediated responses of natural killer and T cells. Nature. 1996;382(6587):171-174.

    Not in our library10.1038/382171a0

  28. 28.

    Aune TM, Collins PL, Chang S. Epigenetics and T helper 1 differentiation. Immunology. 2009;126(3):299-305.

    Not in our library10.1111/j.1365-2567.2008.03026.x

  29. 29.

    Thieu VT, Yu Q, Chang HC, et al. Signal transducer and activator of transcription 4 is required for the transcription factor T-bet to promote T helper 1 cell-fate determination. Immunity. 2008;29(5):679-690.

    Not in our library10.1016/j.immuni.2008.08.017

  30. 30.

    Komine O, Hayashi K, Natsume W, et al. The Runx1 transcription factor inhibits the differentiation of naive CD4+ T cells into the Th2 lineage by repressing GATA3 expression. Journal of Experimental Medicine. 2003;198(1):51-61.

    Not in our library10.1084/jem.20021200

  31. 31.

    Oestreich KJ, Huang AC, Weinmann AS. The lineage-defining factors T-bet and Bcl-6 collaborate to regulate Th1 gene expression patterns. Journal of Experimental Medicine. 2011;208(5):1001-1013.

    Not in our library10.1084/jem.20102144

  32. 32.

    Fujio K, Okamura T, Yamamoto K. The family of IL-10-secreting CD4+ T cells. Advances in Immunology. 2010;105(C):99-130.

    Not in our library10.1016/s0065-2776(10)05004-2

  33. 33.

    Mullen AC, Hutchins AS, High FA, et al. Hlx is induced by and genetically interacts with T-bet to promote heritable THI gene induction. Nature Immunology. 2002;3(7):652-658.

    Not in our library10.1038/ni807

  34. 34.

    Kaplan MH, Schindler U, Smiley ST, Grusby MJ. Stat6 is required for mediating responses to IL-4 and for the development of Th2 cells. Immunity. 1996;4(3):313-319.

    Not in our library10.1016/s1074-7613(00)80439-2

  35. 35.

    Glimcher LH, Murphy KM. Lineage commitment in the immune system: the T helper lymphocyte grows up. Genes and Development. 2000;14(14):1693-1711.

    Not in our library

  36. 36.

    Zhu J, Guo L, Watson CJ, Hu-Li J, Paul WE. Stat6 is necessary and sufficient for IL-4’s role in TH2 differentiation and cell expansion. Journal of Immunology. 2001;166(12):7276-7281.

    Not in our library10.4049/jimmunol.166.12.7276

  37. 37.

    Zhu J, Yamane H, Cote-Sierra J, Guo L, Paul WE. GATA-3 promotes Th2 responses through three different mechanisms: induction of Th2 cytokine production, selective growth of Th2 cells and inhibition of Th1 cell-specific factors. Cell Research. 2006;16(1):3-10.

    Not in our library10.1038/sj.cr.7310002

  38. 38.

    Usui T, Nishikomori R, Kitani A, Strober W. GATA-3 suppresses Th1 development by downregulation of Stat4 and not through effects on IL-12Rβ2 chain or T-bet. Immunity. 2003;18(3):415-428.

    Not in our library10.1016/s1074-7613(03)00057-8

  39. 39.

    Zhu J, Min B, Hu-Li J, et al. Conditional deletion of Gata3 shows its essential function in TH1-TH2 responses. Nature Immunology. 2004;5(11):1157-1165.

    Not in our library10.1038/ni1128

  40. 40.

    Pai SY, Truitt ML, Ho IC. GATA-3 deficiency abrogates the development and maintenance of T helper type 2 cells. Proceedings of the National Academy of Sciences of the United States of America. 2004;101(7):1993-1998.

    Not in our library10.1073/pnas.0308697100

  41. 41.

    Horiuchi S, Onodera A, Hosokawa H, et al. Genome-wide analysis reveals unique regulation of transcription of Th2-specific genes by GATA3. Journal of Immunology. 2011;186(11):6378-6389.

    Not in our library10.4049/jimmunol.1100179

  42. 42.

    Boehm U, Klamp T, Groot M, Howard JC. Cellular responses to interferon-γ. Annual Review of Immunology. 1997;15:749-795.

    Not in our library10.1146/annurev.immunol.15.1.749

  43. 43.

    Halonen SK, Taylor GA, Weiss LM. Gamma interferon-induced inhibition of Toxoplasma gondii in astrocytes is mediated by IGTP. Infection and Immunity. 2001;69(9):5573-5576.

    Not in our library10.1128/iai.69.9.5573-5576.2001

  44. 44.

    Cote-Sierra J, Foucras G, Guo L, et al. Interleukin 2 plays a central role in Th2 differentiation. Proceedings of the National Academy of Sciences of the United States of America. 2004;101(11):3880-3885.

    Not in our library10.1073/pnas.0400339101

  45. 45.

    Zhu J, Cote-Sierra J, Guo L, Paul WE. Stat5 activation plays a critical role in Th2 differentiation. Immunity. 2003;19(5):739-748.

    Not in our library10.1016/s1074-7613(03)00292-9

  46. 46.

    Kim JI, Ho IC, Grusby MJ, Glimcher LH. The transcription factor c-Maf controls the production of interleukin-4 but not other Th2 cytokines. Immunity. 1999;10(6):745-751.

    Not in our library10.1016/s1074-7613(00)80073-4

  47. 47.

    Stritesky GL, Muthukrishnan R, Sehra S, et al. The transcription factor STAT3 is required for T helper 2 cell development. Immunity. 2011;34(1):39-49.

    Not in our library10.1016/j.immuni.2010.12.013

  48. 48.

    Stritesky GL, Kaplan MH. Changing the STATus quo in T helper cells. Transcription. 2011;2(4):179-182.

    Not in our library10.4161/trns.2.4.16614

  49. 49.

    Diehl S, Rincón M. The two faces of IL-6 on Th1/Th2 differentiation. Molecular Immunology. 2002;39(9):531-536.

    Not in our library10.1016/s0161-5890(02)00210-9

  50. 50.

    Diehl S, Anguita J, Hoffmeyer A, et al. Inhibition of Th1 differentiation by IL-6 is mediated by SOCS1. Immunity. 2000;13(6):805-815.

    Not in our library10.1016/s1074-7613(00)00078-9

  51. 51.

    Zhu J, Jankovic D, Grinberg A, Guo L, Paul WE. Gfi-1 plays an important role in IL-2-mediated Th2 cell expansion. Proceedings of the National Academy of Sciences of the United States of America. 2006;103(48):18214-18219.

    Not in our library10.1073/pnas.0608981103

  52. 52.

    Zhu J, Guo L, Min B, et al. Growth factor independent-1 induced by IL-4 regulates Th2 cell proliferation. Immunity. 2002;16(5):733-744.

    Not in our library10.1016/s1074-7613(02)00317-5

  53. 53.

    Ho IC, Lo D, Glimcher LH. c-maf Promotes T helper cell type 2 (Th2) and attenuates Th1 differentiation by both interleukin 4-dependent and -independent mechanisms. Journal of Experimental Medicine. 1998;188(10):1859-1866.

    Not in our library10.1084/jem.188.10.1859

  54. 54.

    Rengarajan J, Mowen KA, McBride KD, Smith ED, Singh H, Glimcher LH. Interferon regulatory factor 4 (IRF4) interacts with NFATc2 to modulate interleukin 4 gene expression. Journal of Experimental Medicine. 2002;195(8):1003-1012.

    Not in our library10.1084/jem.20011128

  55. 55.

    Lohoff M, Mittrücker HW, Prechtl S, et al. Dysregulated T helper cell differentiation in the absence of interferon regulatory factor 4. Proceedings of the National Academy of Sciences of the United States of America. 2002;99(18):11808-11812.

    Not in our library10.1073/pnas.182425099

  56. 56.

    Veldhoen M, Uyttenhove C, van Snick J, et al. Transforming growth factor-β “reprograms” the differentiation of T helper 2 cells and promotes an interleukin 9-producing subset. Nature Immunology. 2008;9(12):1341-1346.

    Not in our library10.1038/ni.1659

  57. 57.

    Staudt V, Bothur E, Klein M, et al. Interferon-regulatory factor 4 is essential for the developmental program of T helper 9 cells. Immunity. 2010;33(2):192-202.

    Not in our library10.1016/j.immuni.2010.07.014

  58. 58.

    Veldhoen M, Hocking RJ, Atkins CJ, Locksley RM, Stockinger B. TGFβ in the context of an inflammatory cytokine milieu supports de novo differentiation of IL-17-producing T cells. Immunity. 2006;24(2):179-189.

    Not in our library10.1016/j.immuni.2006.01.001

  59. 59.

    Mangan PR, Harrington LE, O’Quinn DB, et al. Transforming growth factor-β induces development of the T H17 lineage. Nature. 2006;441(7090):231-234.

    Not in our library10.1038/nature04754

  60. 60.

    Bettelli E, Carrier Y, Gao W, et al. Reciprocal developmental pathways for the generation of pathogenic effector TH17 and regulatory T cells. Nature. 2006;441(7090):235-238.

    Not in our library10.1038/nature04753

  61. 61.

    Manel N, Unutmaz D, Littman DR. The differentiation of human TH-17 cells requires transforming growth factor-β and induction of the nuclear receptor RORγt. Nature Immunology. 2008;9(6):641-649.

    Not in our library10.1038/ni.1610

  62. 62.

    Volpe E, Servant N, Zollinger R, et al. A critical function for transforming growth factor-β, interleukin 23 and proinflammatory cytokines in driving and modulating human TH-17 responses. Nature Immunology. 2008;9(6):650-657.

    Not in our library10.1038/ni.1613

  63. 63.

    Chen W, Jin W, Hardegen N, et al. Conversion of peripheral CD4+CD25- naive T cells to CD4+CD25+ regulatory T cells by TGF-β induction of transcription factor foxp3. Journal of Experimental Medicine. 2003;198(12):1875-1886.

    Not in our library10.1084/jem.20030152

  64. 64.

    Zhou L, Lopes JE, Chong MMW, et al. TGF-β-induced Foxp3 inhibits TH17 cell differentiation by antagonizing RORγt function. Nature. 2008;453(7192):236-240.

    Not in our library10.1038/nature06878

  65. 65.

    Qin H, Wang L, Feng T, et al. TGF-β promotes Th17 cell development through inhibition of SOCS3. Journal of Immunology. 2009;183(1):97-105.

    Not in our library10.4049/jimmunol.0801986

  66. 66.

    Ivanov II, McKenzie BS, Zhou L, et al. The orphan nuclear receptor RORγt directs the differentiation program of proinflammatory IL-17+ T helper cells. Cell. 2006;126(6):1121-1133.

    Not in our library10.1016/j.cell.2006.07.035

  67. 67.

    Yang XO, Pappu BP, Nurieva R, et al. T Helper 17 lineage differentiation is programmed by orphan nuclear receptors RORα and RORγ. Immunity. 2008;28(1):29-39.

    Not in our library10.1016/j.immuni.2007.11.016

  68. 68.

    Yang XO, Panopoulos AD, Nurieva R, et al. STAT3 regulates cytokine-mediated generation of inflammatory helper T cells. Journal of Biological Chemistry. 2007;282(13):9358-9363.

    Not in our library10.1074/jbc.c600321200

  69. 69.

    Chen Z, Laurence A, Kanno Y, et al. Selective regulatory function of Socs3 in the formation of IL-17-secreting T cells. Proceedings of the National Academy of Sciences of the United States of America. 2006;103(21):8137-8142.

    Not in our library10.1073/pnas.0600666103

  70. 70.

    Zhang F, Meng G, Strober W. Interactions among the transcription factors Runx1, RORγt and Foxp3 regulate the differentiation of interleukin 17-producing T cells. Nature Immunology. 2008;9(11):1297-1306.

    Not in our library10.1038/ni.1663

  71. 71.

    Lazarevic V, Chen X, Shim JH, et al. T-bet represses TH 17 differentiation by preventing Runx1-mediated activation of the gene encoding RORγt. Nature Immunology. 2011;12(1):96-104.

    Not in our library10.1038/ni.1969

  72. 72.

    Veldhoen M, Hirota K, Westendorf AM, et al. The aryl hydrocarbon receptor links TH17-cell-mediated autoimmunity to environmental toxins. Nature. 2008;453(7191):106-109.

    Not in our library10.1038/nature06881

  73. 73.

    Kimura A, Naka T, Nohara K, Fujii-Kuriyama Y, Kishimoto T. Aryl hydrocarbon receptor regulates Stat1 activation and participates in the development of Th17 cells. Proceedings of the National Academy of Sciences of the United States of America. 2008;105(28):9721-9726.

    Not in our library10.1073/pnas.0804231105

  74. 74.

    Schraml BU, Hildner K, Ise W, et al. The AP-1 transcription factor Batf controls T H 17 differentiation. Nature. 2009;460(7253):405-409.

    Not in our library10.1038/nature08114

  75. 75.

    Brüstle A, Heink S, Huber M, et al. The development of inflammatory TH-17 cells requires interferon-regulatory factor 4. Nature Immunology. 2007;8(9):958-966.

    Not in our library10.1038/ni1500

  76. 76.

    Chen Q, Yang W, Gupta S, et al. IRF-4-binding protein inhibits interleukin-17 and interleukin-21 production by controlling the activity of IRF-4 transcription factor. Immunity. 2008;29(6):899-911.

    Not in our library10.1016/j.immuni.2008.10.011

  77. 77.

    Korn T, Bettelli E, Gao W, et al. IL-21 initiates an alternative pathway to induce proinflammatory T (H)17 cells. Nature. 2007;448(7152):484-487.

    Not in our library10.1038/nature05970

  78. 78.

    Nurieva R, Yang XO, Martinez G, et al. Essential autocrine regulation by IL-21 in the generation of inflammatory T cells. Nature. 2007;448(7152):480-483.

    Not in our library10.1038/nature05969

  79. 79.

    Langrish CL, Chen Y, Blumenschein WM, et al. IL-23 drives a pathogenic T cell population that induces autoimmune inflammation. Journal of Experimental Medicine. 2005;201(2):233-240.

    Not in our library10.1084/jem.20041257

  80. 80.

    Zhou L, Ivanov II, Spolski R, et al. IL-6 programs TH-17 cell differentiation by promoting sequential engagement of the IL-21 and IL-23 pathways. Nature Immunology. 2007;8(9):967-974.

    Not in our library10.1038/ni1488

  81. 81.

    Ghoreschi K, Laurence A, Yang XP, et al. Generation of pathogenic TH 17 cells in the absence of TGF-β 2 signalling. Nature. 2010;467(7318):967-971.

    Not in our library10.1038/nature09447

  82. 82.

    Chen W, Jin W, Hardegen N, et al. Conversion of peripheral CD4+CD25- naive T cells to CD4+CD25+ regulatory T cells by TGF-β induction of transcription factor Foxp3. Journal of Experimental Medicine. 2003;198(12):1875-1886.

    Not in our library10.1084/jem.20030152

  83. 83.

    Li MO, Wan YY, Flavell RA. T Cell-Produced Transforming Growth Factor-β1 Controls T Cell Tolerance and Regulates Th1- and Th17-Cell Differentiation. Immunity. 2007;26(5):579-591.

    Not in our library10.1016/j.immuni.2007.03.014

  84. 84.

    Kriegel MA, Li MO, Sanjabi S, Wan YY, Flavell RA. Transforming growth factor-β: recent advances on its role in immune tolerance. Current Rheumatology Reports. 2006;8(2):138-144.

    Not in our library10.1007/s11926-006-0054-y

  85. 85.

    Yoshimura A, Muto G. TGF-β function in immune suppression. Current Topics in Microbiology and Immunology. 2011;350:127-147.

    Not in our library10.1007/82_2010_87

  86. 86.

    Fontenot JD, Gavin MA, Rudensky AY. Foxp3 programs the development and function of CD4+CD25+ regulatory T cells. Nature Immunology. 2003;4(4):330-336.

    Not in our library10.1038/ni904

  87. 87.

    Yagi H, Nomura T, Nakamura K, et al. Crucial role of FOXP3 in the development and function of human CD25+CD4+ regulatory T cells. International Immunology. 2004;16(11):1643-1656.

    Not in our library10.1093/intimm/dxh165

  88. 88.

    Takimoto T, Wakabayashi Y, Sekiya T, Inoue N. Smad2 and Smad3 are redundantly essential for the TGF-β-mediated regulation of regulatory T plasticity and Th1 development. Journal of Immunology. 2010;185(2):842-855.

    Not in our library10.4049/jimmunol.0904100

  89. 89.

    Tone Y, Furuuchi K, Kojima Y, Tykocinski ML, Greene MI, Tone M. Smad3 and NFAT cooperate to induce Foxp3 expression through its enhancer. Nature Immunology. 2008;9(2):194-202.

    Not in our library10.1038/ni1549

  90. 90.

    Martinez GJ, Zhang Z, Chung Y, et al. Smad3 differentially regulates the induction of regulatory and inflammatory T cell differentiation. Journal of Biological Chemistry. 2009;284(51):35283-35286.

    Not in our library10.1074/jbc.c109.078238

  91. 91.

    Laurence A, Tato CM, Davidson TS, et al. Interleukin-2 signaling via STAT5 constrains T helper 17 cell generation. Immunity. 2007;26(3):371-381.

    Not in our library10.1016/j.immuni.2007.02.009

  92. 92.

    Davidson TS, DiPaolo RJ, Andersson J, Shevach EM. Cutting edge: IL-2 is essential for TGF-β-mediated induction of Foxp3+ T regulatory cells. Journal of Immunology. 2007;178(7):4022-4026.

    Not in our library10.4049/jimmunol.178.7.4022

  93. 93.

    Burchill MA, Yang J, Vogtenhuber C, Blazar BR, Farrar MA. IL-2 receptor β-dependent STAT5 activation is required for the development of Foxp3+ regulatory T cells. Journal of Immunology. 2007;178(1):280-290.

    Not in our library10.4049/jimmunol.178.1.280

  94. 94.

    Brandenburg S, Takahashi T, de la Rosa M, et al. IL-2 induces in vivo suppression by CD4+CD25+Foxp3+ regulatory T cells. European Journal of Immunology. 2008;38(6):1643-1653.

    Not in our library10.1002/eji.200737791

  95. 95.

    Kaplan MH, Glosson NL, Stritesky GL, et al. STAT3-dependent IL-21 production from T helper cells regulates hematopoietic progenitor cell homeostasis. Blood. 2011;117(23):6198-6201.

    Not in our library10.1182/blood-2011-02-334367

  96. 96.

    Wu Y, Borde M, Heissmeyer V, et al. FOXP3 controls regulatory T cell function through cooperation with NFAT. Cell. 2006;126(2):375-387.

    Not in our library10.1016/j.cell.2006.05.042

  97. 97.

    Awasthi A, Carrier Y, Peron JPS, et al. A dominant function for interleukin 27 in generating interleukin 10-producing anti-inflammatory T cells. Nature Immunology. 2007;8(12):1380-1389.

    Not in our library10.1038/ni1541

  98. 98.

    Gregori S, Tomasoni D, Pacciani V, et al. Differentiation of type 1 T regulatory cells (Tr1) by tolerogenic DC-10 requires the IL-10-dependent ILT4/HLA-G pathway. Blood. 2010;116(6):935-944.

    Not in our library10.1182/blood-2009-07-234872

  99. 99.

    Pot C, Jin H, Awasthi A, et al. Cutting edge: IL-27 induces the transcription factor c-Maf, cytokine IL-21, and the costimulatory receptor ICOS that coordinately act together to promote differentiation of IL-10-producing Tr1 cells. Journal of Immunology. 2009;183(2):797-801.

    Not in our library10.4049/jimmunol.0901233

  100. 100.

    Apetoh L, Quintana FJ, Pot C, et al. The Aryl hydrocarbon Receptor (AhR) interacts with c-Maf to promote the differentiation of IL-27-induced regulatory type 1 (TR1) cells. Nature Immunology. 2010;11(9):854-861.

    Not in our library10.1038/ni.1912

  101. 101.

    Vinuesa CG, Tangye SG, Moser B, Mackay CR. Follicular B helper T cells in antibody responses and autoimmunity. Nature Reviews Immunology. 2005;5(11):853-865.

    Not in our library10.1038/nri1714

  102. 102.

    Breitfeld D, Ohl L, Kremmer E, et al. Follicular B helper T cells express CXC chemokine receptor 5, localize to B cell follicles, and support immunoglobulin production. Journal of Experimental Medicine. 2000;192(11):1545-1551.

    Not in our library10.1084/jem.192.11.1545

  103. 103.

    Vogelzang A, McGuire HM, Yu D, Sprent J, Mackay CR, King C. A fundamental role for interleukin-21 in the generation of T follicular helper cells. Immunity. 2008;29(1):127-137.

    Not in our library10.1016/j.immuni.2008.06.001

  104. 104.

    Nurieva RI, Chung Y, Hwang D, et al. Generation of T follicular helper cells is mediated by interleukin-21 but independent of T helper 1, 2, or 17 cell lineages. Immunity. 2008;29(1):138-149.

    Not in our library10.1016/j.immuni.2008.05.009

  105. 105.

    Halonen SK, Taylor GA, Weiss LM. Gamma interferon-induced inhibition of Toxoplasma gondii in astrocytes is mediated by IGTP. Infection and Immunity. 2001;69(9):5573-5576.

    Not in our library10.1128/iai.69.9.5573-5576.2001

  106. 106.

    Akiba H, Takeda K, Kojima Y, et al. The role of ICOS in the CXCR5+ follicular B helper T cell maintenance in vivo. Journal of Immunology. 2005;175(4):2340-2348.

    Not in our library10.4049/jimmunol.175.4.2340

  107. 107.

    Bossaller L, Burger J, Draeger R, et al. ICOS deficiency is associated with a severe reduction of CXCR5 +CD4 germinal center Th Cells. Journal of Immunology. 2006;177(7):4927-4932.

    Not in our library10.4049/jimmunol.177.7.4927

  108. 108.

    Nurieva RI, Chung Y, Martinez GJ, et al. Bcl6 mediates the development of T follicular helper cells. Science. 2009;325(5943):1001-1005.

    Not in our library10.1126/science.1176676

  109. 109.

    Bending D, De La Peña H, Veldhoen M, et al. Highly purified Th17 cells from BDC2.5NOD mice convert into Th1-like cells in NOD/SCID recipient mice. Journal of Clinical Investigation. 2009;119(3):565-572.

    Not in our library10.1172/jci37865

  110. 110.

    Lee YK, Turner H, Maynard CL, et al. Late developmental plasticity in the T helper 17 lineage. Immunity. 2009;30(1):92-107.

    Not in our library10.1016/j.immuni.2008.11.005

  111. 111.

    Xu L, Kitani A, Fuss I, Strober W. Cutting edge: regulatory T cells induce CD4+CD25 -Foxp3- T cells or are self-induced to become Th17 cells in the absence of exogenous TGF-β. Journal of Immunology. 2007;178(11):6725-6729.

    Not in our library10.4049/jimmunol.178.11.6725

  112. 112.

    Tsuji M, Komatsu N, Kawamoto S, et al. Preferential generation of follicular B helper T cells from Foxp3 + T cells in gut Peyer’s patches. Science. 2009;323(5920):1488-1492.

    Not in our library10.1126/science.1169152

  113. 113.

    Zheng Y, Chaudhry A, Kas A, et al. Regulatory T-cell suppressor program co-opts transcription factor IRF4 to control TH2 responses. Nature. 2009;458(7236):351-356.

    Not in our library10.1038/nature07674

  114. 114.

    del Prete G. Human Th1 and Th2 lymphocytes: their role in the pathophysiology of atopy. Allergy. 1992;47(5):450-455.

    Not in our library10.1111/j.1398-9995.1992.tb00662.x

  115. 115.

    Murray HW, Rubin BY, Carriero SM. Human mononuclear phagocyte antiprotozoal mechanisms: Oxygen-dependent vs oxygen-independent activity against intracellular Toxoplasma gondii. Journal of Immunology. 1985;134(3):1982-1988.

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  116. 116.

    Boehm U, Klamp T, Groot M, Howard JC. Cellular responses to interferon-γ. Annual Review of Immunology. 1997;15:749-795.

    Not in our library10.1146/annurev.immunol.15.1.749

  117. 117.

    Melzer T, Duffy A, Weiss LM, Halonen SK. The gamma interferon (IFN-γ)-inducible GTP-binding protein IGTP is necessary for Toxoplasma vacuolar disruption and induces parasite egression in IFN-γ-stimulated astrocytes. Infection and Immunity. 2008;76(11):4883-4894.

    Not in our library10.1128/iai.01288-07

  118. 118.

    Taylor GA, Feng CG, Sher A. p47 GTPases: regulators of immunity to intracellular pathogens. Nature Reviews Immunology. 2004;4(2):100-109.

    Not in our library10.1038/nri1270

  119. 119.

    Chiang EY, Kolumam GA, Yu X, et al. Targeted depletion of lymphotoxin-α-expressing T H 1 and T H 17 cells inhibits autoimmune disease. Nature Medicine. 2009;15(7):766-773.

    Not in our library10.1038/nm.1984

  120. 120.

    Suen WE, Bergman CM, Hjelmström P, Ruddle NH. A critical role for lymphotoxin in experimental allergic encephalomyelitis. Journal of Experimental Medicine. 1997;186(8):1233-1240.

    Not in our library10.1084/jem.186.8.1233

  121. 121.

    Kim HP, Imbert J, Leonard WJ. Both integrated and differential regulation of components of the IL-2/IL-2 receptor system. Cytokine and Growth Factor Reviews. 2006;17(5):349-366.

    Not in our library10.1016/j.cytogfr.2006.07.003

  122. 122.

    Gattinoni L, Klebanoff CA, Palmer DC, et al. Acquisition of full effector function in vitro paradoxically impairs the in vivo antitumor efficacy of adoptively transferred CD8+ T cells. Journal of Clinical Investigation. 2005;115(6):1616-1626.

    Not in our library10.1172/jci24480

  123. 123.

    Williams MA, Tyznik AJ, Bevan MJ. Interleukin-2 signals during priming are required for secondary expansion of CD8+ memory T cells. Nature. 2006;441(7095):890-893.

    Not in our library10.1038/nature04790

  124. 124.

    Wuest TY, Willette-Brown J, Durum SK, Hurwitz AA. The influence of IL-2 family cytokines on activation and function of naturally occurring regulatory T cells. Journal of Leukocyte Biology. 2008;84(4):973-980.

    Not in our library10.1189/jlb.1107778

  125. 125.

    Sokol CL, Chu NQ, Yu S, Nish SA, Laufer TM, Medzhitov R. Basophils function as antigen-presenting cells for an allergen-induced T helper type 2 response. Nature Immunology. 2009;10(7):713-720.

    Not in our library10.1038/ni.1738

  126. 126.

    Steinke JW, Borish L. Th2 cytokines and asthma. Interleukin-4: its role in the pathogenesis of asthma, and targeting it for asthma treatment with interleukin-4 receptor antagonists. Respiratory Research. 2001;2(2):66-70.

    Not in our library10.1186/rr40

  127. 127.

    Doucet C, Brouty-Boyé D, Pottin-Clemenceau C, Jasmin C, Canonica GW, Azzarone B. IL-4 and IL-13 specifically increase adhesion molecule and inflammatory cytokine expression in human lung fibroblasts. International Immunology. 1998;10(10):1421-1433.

    Not in our library10.1093/intimm/10.10.1421

  128. 128.

    Martinez-Moczygemba M, Huston DP. Biology of common β receptor-signaling cytokines: IL-3, IL-5, and GM-CSF. Journal of Allergy and Clinical Immunology. 2003;112(4):653-665.

    Not in our library10.1016/s0091

  129. 129.

    Little FF, Cruikshank WW, Center DM. IL-9 stimulates release of chemotactic factors from human bronchial epithelial cells. American Journal of Respiratory Cell and Molecular Biology. 2001;25(3):347-352.

    Not in our library10.1165/ajrcmb.25.3.4349

  130. 130.

    Wynn TA. IL-13 effector functions. Annual Review of Immunology. 2003;21:425-456.

    Not in our library10.1146/annurev.immunol.21.120601.141142

  131. 131.

    Couper KN, Blount DG, Riley EM. IL-10: the master regulator of immunity to infection. Journal of Immunology. 2008;180(9):5771-5777.

    Not in our library10.4049/jimmunol.180.9.5771

  132. 132.

    Fort MM, Cheung J, Yen D, et al. IL-25 Induces IL-4, IL-5, and IL-13 and Th2-associated pathologies in vivo. Immunity. 2001;15(6):985-995.

    Not in our library10.1016/s1074-7613(01)00243-6

  133. 133.

    Kleinschek MA, Owyang AM, Joyce-Shaikh B, et al. IL-25 regulates Th17 function in autoimmune inflammation. Journal of Experimental Medicine. 2007;204(1):161-170.

    Not in our library10.1084/jem.20061738

  134. 134.

    Ballantyne SJ, Barlow JL, Jolin HE, et al. Blocking IL-25 prevents airway hyperresponsiveness in allergic asthma. Journal of Allergy and Clinical Immunology. 2007;120(6):1324-1331.

    Not in our library10.1016/j.jaci.2007.07.051

  135. 135.

    Zaiss DM, Yang L, Shah PR, Kobie JJ, Urban JF, Mosmann TR. Amphiregulin, a TH2 cytokine enhancing resistance to nematodes. Science. 2006;314(5806):p. 1746.

    Not in our library10.1126/science.1133715

  136. 136.

    Xing J, Wu Y, Ni B. Th9: a new player in asthma pathogenesis? Journal of Asthma. 2011;48(2):115-125.

    Not in our library10.3109/02770903.2011.554944

  137. 137.

    Annunziato F, Cosmi L, Santarlasci V, et al. Phenotypic and functional features of human Th17 cells. Journal of Experimental Medicine. 2007;204(8):1849-1861.

    Not in our library10.1084/jem.20070663

  138. 138.

    Weaver CT, Harrington LE, Mangan PR, Gavrieli M, Murphy KM. Th17: an effector CD4 T cell lineage with regulatory T Cell ties. Immunity. 2006;24(6):677-688.

    Not in our library10.1016/j.immuni.2006.06.002

  139. 139.

    Ivanov II, McKenzie BS, Zhou L, et al. The Orphan Nuclear Receptor RORγt Directs the Differentiation Program of Proinflammatory IL-17+ T Helper Cells. Cell. 2006;126(6):1121-1133.

    Not in our library10.1016/j.cell.2006.07.035

  140. 140.

    Gaffen SL. Structure and signalling in the IL-17 receptor family. Nature Reviews Immunology. 2009;9(8):556-567.

    Not in our library10.1038/nri2586

  141. 141.

    Moseley TA, Haudenschild DR, Rose L, Reddi AH. Interleukin-17 family and IL-17 receptors. Cytokine and Growth Factor Reviews. 2003;14(2):155-174.

    Not in our library10.1016/s1359-6101(03)00002-9

  142. 142.

    Korn T, Bettelli E, Gao W, et al. IL-21 initiates an alternative pathway to induce proinflammatory T H17 cells. Nature. 2007;448(7152):484-487.

    Not in our library10.1038/nature05970

  143. 143.

    Leonard WJ, Spolski R. Interleukin-21: a modulator of lymphoid proliferation, apoptosis and differentiation. Nature Reviews Immunology. 2005;5(9):688-698.

    Not in our library10.1038/nri1688

  144. 144.

    Aujla SJ, Chan YR, Zheng M, et al. IL-22 mediates mucosal host defense against Gram-negative bacterial pneumonia. Nature Medicine. 2008;14(3):275-281.

    Not in our library10.1038/nm1710

  145. 145.

    Zenewicz LA, Yancopoulos GD, Valenzuela DM, Murphy AJ, Karow M, Flavell RA. Interleukin-22 but not interleukin-17 provides protection to hepatocytes during acute liver inflammation. Immunity. 2007;27(4):647-659.

    Not in our library10.1016/j.immuni.2007.07.023

  146. 146.

    Sakaguchi S, Ono M, Setoguchi R, et al. Foxp3+CD25+CD4+ natural regulatory T cells in dominant self-tolerance and autoimmune disease. Immunological Reviews. 2006;212:8-27.

    Not in our library10.1111/j.0105-2896.2006.00427.x

  147. 147.

    Ouyang W, Rutz S, Crellin NK, Valdez PA, Hymowitz SG. Regulation and functions of the IL-10 family of cytokines in inflammation and disease. Annual Review of Immunology. 2011;29:71-109.

    Not in our library10.1146/annurev-immunol-031210-101312

  148. 148.

    Asseman C, Mauze S, Leach MW, Coffman RL, Powrie F. An essential role for interleukin 10 in the function of regulatory T cells that inhibit intestinal inflammation. Journal of Experimental Medicine. 1999;190(7):995-1004.

    Not in our library10.1084/jem.190.7.995

  149. 149.

    Jutel M, Akdis C. T-cell regulatory mechanisms in specific immunotherapy. Chemical Immunology and Allergy. 2008;94:158-177.

    Not in our library10.1159/000155000

  150. 150.

    Li MO, Wan YY, Flavell RA. T Cell-Produced Transforming Growth Factor-β1 Controls T Cell Tolerance and Regulates Th1- and Th17-Cell Differentiation. Immunity. 2007;26(5):579-591.

    Not in our library10.1016/j.immuni.2007.03.014

  151. 151.

    Fazilleau N, Mark L, McHeyzer-Williams LJ, McHeyzer-Williams MG. Follicular helper T Cells: lineage and location. Immunity. 2009;30(3):324-335.

    Not in our library10.1016/j.immuni.2009.03.003

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