Uniform Manifold Approximation and Projection (UMAP) Reveals Composite Patterns and Resolves Visualization Artifacts in Microbiome Data
George Armstrong, Cameron Martino, Gibraan Rahman and 4 more
mSystems · 2021
doi:10.1128/msystems.00691-21 (opens in a new tab)
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Abstract
UMAP provides an additional method to visualize microbiome data. The method is extensible to any beta diversity metric used with PCoA, and our results demonstrate that UMAP can indeed improve visualization quality and correspondence with biological and technical variables of interest.
Abstract licence: CC BY
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