Global Distribution and Diversity of Prevalent Sewage Water Plasmidomes

Antimicrobial resistance is a global threat to human health, as it inhibits our ability to treat infectious diseases. This study utilizes sewage water plasmidomes to identify plasmid-derived features and highlights antimicrobial resistance genes, particularly macrolide resistance genes, as abundant in sewage water plasmidomes in Firmicutes and Acinetobacter hosts.

Abstract licence: CC BY

1. 17.

   Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement · 2014

2. 21.

   ForceAtlas2, a Continuous Graph Layout Algorithm for Handy Network Visualization Designed for the Gephi Software · 2014

3. 27.

   The antibiotic resistance “mobilome”: searching for the link between environment and clinic · 2013

4. 42.

   BLAST+: architecture and applications · 2009

5. 43.

   Prodigal: prokaryotic gene recognition and translation initiation site identification · 2010

6. 45.

   Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing · 2013

7. 47.

   nhmmer: DNA homology search with profile HMMs · 2013

8. 48.

   Gene regulatory networks and their applications: understanding biological and medical problems in terms of networks · 2014

9. 53.

   Ancient DNA and the rewriting of human history: be sparing with Occam’s razor · 2016

10. 54.

    Dissemination of Antimicrobial Resistance in Microbial Ecosystems through Horizontal Gene Transfer · 2016

11. 57.

    Microreact: visualizing and sharing data for genomic epidemiology and phylogeography · 2016

12. 63.

    Rapid and precise alignment of raw reads against redundant databases with KMA · 2018

13. 67.

    Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage · 2019

14. 68.

    PPR-Meta: a tool for identifying phages and plasmids from metagenomic fragments using deep learning · 2019

15. 69.

    Mash: fast genome and metagenome distance estimation using MinHash · 2016

16. 71.

    CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database · 2019

17. 75.

    Pathways for horizontal gene transfer in bacteria revealed by a global map of their plasmids · 2020

18. 79.

    Pfam: The protein families database in 2021 · 2020

19. 88.

    Lactiplantibacillus plantarum–Nomad and Ideal Probiotic · 2021

20. 90.

    A Review on Occurrence and Spread of Antibiotic Resistance in Wastewaters and in Wastewater Treatment Plants: Mechanisms and Perspectives · 2021

21. 91.

    PLSDB: advancing a comprehensive database of bacterial plasmids · 2021

22. 95.

    Emergence of methicillin resistance predates the clinical use of antibiotics · 2022

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