Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks

• Joint analysis of transcriptome and metabolome on the accumulation mechanism of flavonoids in quinoa seedlings under flooding stress · 2025

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• Role of Ocrelizumab in modulating gene and microRNA expression in multiple sclerosis · 2025

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• Machine learning-based proteomics profiling of ALS identifies downregulation of RPS29 that maintains protein homeostasis and STMN2 level · 2025

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• Transcriptomic insights into the synergistic effects of darkness and mechanical stimulation on peanut pod development · 2025

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• CCDC138 overexpression predicts poor prognosis and highlights ciliopathy-linked mechanisms in uterine corpus endometrial carcinoma · 2025

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• Pathogenic variants of TUBB8 cause oocyte spindle defects by disrupting with EB1/CAKP5 interactions and potential treatment targeting microtubule acetylation through HDAC6 inhibition · 2025

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• Identification of telomere maintenance related biomarkers and regulatory mechanisms in chronic obstructive pulmonary disease by machine learning algorithm · 2025

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• Protein phosphorylation networks in Baylisascaris procyonis revealed by phosphoproteomic analysis · 2025

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• Identifying pyroptosis- and inflammation-related genes in spinal cord injury based on bioinformatics analysis · 2025

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• Discovery of novel non-retroviral endogenous viral elements reveals their long-term integration history in spiders · 2025

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• Long COVID manifests with T cell dysregulation, inflammation and an uncoordinated adaptive immune response to SARS-CoV-2 · 2024

• Resistant starch intake facilitates weight loss in humans by reshaping the gut microbiota · 2024

• Evolution and host-specific adaptation of Pseudomonas aeruginosa · 2024

• LIANA+ provides an all-in-one framework for cell–cell communication inference · 2024

• Spatially organized cellular communities form the developing human heart · 2024

• Rapid expansion and international spread of M1UK in the post-pandemic UK upsurge of Streptococcus pyogenes · 2024

• Deep phenotyping of post-infectious myalgic encephalomyelitis/chronic fatigue syndrome · 2024

• Integrating Molecular Perspectives: Strategies for Comprehensive Multi-Omics Integrative Data Analysis and Machine Learning Applications in Transcriptomics, Proteomics, and Metabolomics · 2024

• Comparative Toxicogenomics Database’s 20th anniversary: update 2025 · 2024

• Defining blood-induced microglia functions in neurodegeneration through multiomic profiling · 2023

and 1,625 more

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