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RNAcentral: a comprehensive database of non-coding RNA sequences

The RNAcentral Consortium, Anton I Petrov, Simon J E Kay and 50 more

Nucleic Acids Research · 2016

Abstract

RNAcentral is a database of non-coding RNA (ncRNA) sequences that aggregates data from specialised ncRNA resources and provides a single entry point for accessing ncRNA sequences of all ncRNA types from all organisms. Since its launch in 2014, RNAcentral has integrated twelve new resources, taking the total number of collaborating database to 22, and began importing new types of data, such as modified nucleotides from MODOMICS and PDB. We created new species-specific identifiers that refer to unique RNA sequences within a context of single species. The website has been subject to continuous improvements focusing on text and sequence similarity searches as well as genome browsing functionality. All RNAcentral data is provided for free and is available for browsing, bulk downloads, and programmatic access at http://rnacentral.org/.

Shown for reading. Its publisher allows quoting it, not republishing it.

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Cited by papers we hold 11

Informative RNA base embedding for RNA structural alignment and clustering by deep representation learning · 2022
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Hepatocyte-specific IL11 cis-signaling drives lipotoxicity and underlies the transition from NAFLD to NASH · 2021
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The architecture of the SARS-CoV-2 RNA genome inside virion · 2021
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RMVar: an updated database of functional variants involved in RNA modifications · 2020
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RNA secondary structure prediction using an ensemble of two-dimensional deep neural networks and transfer learning · 2019
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miRBase: from microRNA sequences to function · 2018
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RNAcentral: a hub of information for non-coding RNA sequences · 2018
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