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Oscillospira - a candidate for the next-generation probiotics

Jingpeng Yang, Yanan Li, Zhiqiang Wen and 3 more

Gut Microbes · 2021 · Review

doi:10.1080/19490976.2021.1987783

Abstract

Oscillospira is a class of organism that often appears in high-throughput sequencing data but has not been purely cultured and is widely present in the animal and human intestines. There is a strong association between variation in Oscillospira abundance and obesity, leanness, and human health. In addition, a growing body of studies has shown that Oscillospira is also implicated in other diseases, such as gallstones and chronic constipation, and has shown some correlation with the positive or negative changes in its course. Sequencing data combined with metabolic profiling indicate that Oscillospira is likely to be a genus capable of producing short-chain fatty acids (SCFAs) such as butyrate, which is an important reference indicator for screening “next-generation probiotics “. Considering the positive effects of Oscillospira in some specific diseases, such as obesity-related metabolic diseases, it has already been characterized as one of the next-generation probiotic candidates and therefore has great potential for development and application in the future food, health care, and biopharmaceutical products.

Full text

From PubMed Central, U.S. National Library of Medicine, as current on Oct 17, 2026. Paragraph numbers are ours, so an answer can point at one.

Introduction

In the past two decades, with the continuous development of high-throughput sequencing technology, people have gained further understanding of intestinal microorganisms, and the accuracy of species resolution is also getting higher, and some mysterious “dark matter” harbored in the gut is being revealed step by step. From 16S rRNA amplicon sequencing to the widespread use of metagenomic technologies, growing data show that Oscillospira frequently appears in various gut microbiota-related studies, but so far, this organism has never been purely cultured and its metabolic and biological characteristics are still unraveled. Several studies have shown a significant positive association between Oscillospira and low fat, leanness, and human health, in addition to a strong association between this organism and a variety of diseases, especially inflammatory diseases., Gut and fecal microbiome sequencing data show that Oscillospira accounts for a high proportion of the human fecal microbiome, suggesting that this organism is likely to play an important role in human health. Meanwhile, several studies have shown that Oscillospira can produce all kinds of short-chain fatty acids (SCFAs) dominated by butyrate.,, Therefore, whether Oscillospira has potential for development as probiotics and whether it can be the most favorable next-generation probiotic candidate on par with Faecalibacterium prausnitzii, Akkermansia muciniphila, and Eubacterium hallii deserves further research.

Know features of oscillospira

Records of Oscillospira first appeared a century ago when Chatton and Pérard discovered Oscillospira guilliermondii in guinea pig cecal contents, which is the only known species within the genus Oscillospira. However, little is known about its ecological role and physiological properties in the intestine because pure cultures have not been obtained. Since O. guilliermondii is large and morphologically distinct, which facilitates its DNA isolation and 16S rRNA gene amplification and sequencing, the genus Oscillospira was classified based on flow cytometry and determined by 16S rRNA phylogenetic analysis to be a member of the family Ruminococcaceae, order Clostridiales, class Clostridia in the phylum Firmicutes., Some members of the genus Oscillospira are generally rod-shaped or ellipsoidal, 3–6 μm in diameter and 10–40 μm in length, especially O. guilliermondii cells are very large (about 5–7 μm in width, and up to 70 mm in length), and intracellularly closely spaced transverse septa could be seen under transmission electron microscopy. Some of Oscillospira have endospores (2.5 × 4 μm), arranged longitudinally in rods, refractile and variable in number, which usually contain a large number of polysaccharides and appear reddish or mauve in the presence of iodine. Since spore-like structures were observed in Oscillospira, it is speculated that this group of microorganisms may contain spore-associated genes. Gene-level analysis revealed the presence of the small acid-soluble spore protein, spore maturation proteins A and B, six stage III sporulation proteins, and the sporulation transcriptional regulators SpoIIID, and SpoVT in some members of Oscillospira, however, some have no SpoVT and other related spore proteins, suggesting that sporulation is likely a sporadically distributed feature in the Oscillibacter clade. Interestingly, sporulation genes are also present in some non-sporulating species, such as Oscillibacter valericigenes, which contain sporulation genes but do not produce spores, and these sporulation genes may play other roles, such as regulatory genes. Oscillospira is a Gram-positive bacteria with low G + C content, whose sequence is close to that of uncultured bacterial clones within the clostridial cluster IV (Collins nomenclature) obtained from the cecum of broiler chickens and rumen contents of dairy cows. Interestingly, clonal sequences from human fecal samples also belong to this cluster, suggesting that microorganisms within this cluster are widespread not only in the digestive tract of herbivores, but also in the digestive tract of omnivores.

Starting from a metagenomic and metabolic signature perspective, Gophna et al. used sequence similarity, gene neighborhood information, and artificial metabolic pathway screening to decipher key features of Oscillospira and found that this organism has a butyrate kinase-mediated pathway, from which it was inferred that Oscillospira is a butyrate producer and that at least some of these species can utilize gluconate, a common animal-derived sugar that is both produced by the human host and ingested by the host through a diet rich in animal products. On the other hand, it was further demonstrated that Oscillospira can ferment complex plant carbohydrates. Specific carbon sources are also essential for its growth, e.g. Oscillospira grows well in media containing glucose, ethanol, and lactic acid, and glucose in particular significantly promotes its growth. It has been shown that Oscillospira is difficult to culture and slow to grow, which may be related to the longer colonic transit time. Fast colonic transit times select for fast-growing microbes, and by the same token, slower transit conditions allow slower microbes to remain in the lumen and avoid being eluted, a property that the slow-growing Oscillospira seems to fit. On the other hand, the number of tRNA genes in the genome can serve as a strong predictor when microbial generations. The vast majority of fast-growing microbes have more copies of tRNA genes in their genomes, and vice versa. Previous studies have shown that there are less than 40 tRNA genes in Oscillospira, and compared to other fast-growing intestinal microbes such as Bacteroides fragilis (72–73 tRNA genes, generation time 0.63 h), Clostridioides difficile (82 tRNA genes, generation time of < 70 minutes), Oscillospira is typically a very slow-growing organism. In recent years, multiple 16S rRNA amplicon sequencing data based on the human gut microbiome have shown that Oscillospira is an abundant component of the human gut and fecal microbiota, and its gene sequence amount sometimes account for more than 10% of the entire gut microbiota, meanwhile, Oscillospira can produce butyrate, suggesting that this organism may play an important role in various aspects of human bodily functions and health, therefore, more research data are needed to reveal its properties.

Factors affecting the abundance of oscillospira

Various factors are affecting Oscillospira abundance, mainly exogenous factors (Table 1). It is known from a range of literature that probiotics, prebiotics, heavy metals, natural active products, pharmacological interventions, exercise and diet, and other factors can have an impact on the abundance of Oscillospira in the gut (Figure 1).

Probiotics and prebiotics

In poultry farming, probiotic Bacillus is often mixed with feed to achieve the ultimate goal of ensuring individual health and obtaining high-quality meat. Keerqin et al. found that Bacillus subtilis 29,784 significantly improved broilers weight gain and enhanced their gut health status, as well as increased the abundance of Oscillospira in the intestinal tract. Liu et al. added Bacillus subtilis to the diets of pullets, which was able to improve the growth performance and intestinal function and induce Oscillospira to gradually become the dominant species in the gut. Similarly, during neonatal broiler chicken rearing, the addition of probiotic bacillus preparations (Bacillus amyloliquefaciens plus Bacillus subtilis) increased the Oscillospira abundance and significantly reduced the horizontal transmission of pathogenic E. coli, and alleviated the severity of the infection. Probiotics have also performed well in animal models exploring specific disease-related conditions. Zhao et al. found that Bacillus coagulans 13002 significantly alleviated cyclophosphamide-induced intestinal damage in mice and substantially increased the abundance of beneficial microbes such as Oscillospira in the mouse gut through microbiota modulation. Tian et al. used Bifidobacterium breve ATCC 15700 (BB) to treat mice exposed to chronic alcohol intake, followed by analyzing the parameters of intestinal flora and liver injury, they found that there was a significant negative correlation between alcoholic liver disease (ALD) and Oscillospira, while ALD mice treated with BB showed remission of symptoms and a significant increase in Oscillospira abundance. Some probiotic generated proteins and products also have the similar effects. Exopolysaccharide isolated from Leuconostoc pseudomesenteroides XG5 (XG5-EPS) significantly increased the richness of mouse cecum microbiota, especially increasing the relative abundance of Oscillospira at the genus level and the relative abundance of Firmicutes at the phylum level. The effect of Tibet kefir milk (TKM) that co-fermented with lactic acid bacteria and yeast, on fat deposition in rats fed high-fat diets with human-derived flora-associated (HFA), was investigated, and it was found that TKM reduced abdominal fat deposition and the triglyceride (TG) levels in serum at the transcriptional level by regulating Lpl and Angptl4 genes, while increasing Oscillospira abundance. However, not all probiotics can directly or indirectly increase Oscillospira abundance. Gamallat et al. found that long-term supplementation with Lactobacillus rhamnosus reduced female Sprague Dawley Rats body weight, improved serum cytokines, and reduced serum lipoprotein profiles, while their gut Oscillospira abundance was significantly downregulated. Similarly, Clostridium butyricum is capable of producing butyric acid, which has been shown to limit lipid deposition in the liver, restore intestinal barrier function, and improve liver inflammation, with probiotic potential. Liu et al. found that Clostridium butyricum was used in the colitis-associated colon cancer mice and it had alleviated the intestinal inflammation and was accompanied by a decrease in the relative abundance of Oscillospira.

In addition to probiotics, prebiotics also has an important impact on the gut microbiota. Zhao et al. found that oligofructose (FOS) significantly increased the abundance of Oscillospira in the mouse gut, especially when FOS was combined with probiotics was further able to inhibit many harmful gut microbes. Fucoidan (FUC) and galactooligosaccharides (GOS) improved serum dyslipidemia, bile salt hydrolase (BSH) activity, and bile acid-related metabolic levels and promoted Oscillospira abundance in the gut of rats with a high-fat diet; meanwhile, in vitro tests it revealed that FUC and GOS stimulated BSH activity in Lactobacillus casei DM 8121. Human milk oligosaccharides are very important and have a unique and diverse structure, which can influence the development and composition of the gut microbiota of infants and children through different mechanisms. A human mouse model of infant fecal transplantation was used to study the effects of fucosyl-α1,3-GlcNAc (3FN), fucosyl-α1,6-GlcNAc, lacto-N-bioside (LNB), and galacto-N-bioside on fecal microbiota and host-bacteria interactions, and it was found that all these disaccharides significantly upregulate Oscillospira abundance. Li et al. found that pea fiber improved the health status in overweight individuals and increased their intestinal Oscillospira abundance, meanwhile, they found that the increased Oscillospira was significantly associated with the decreased deoxycholic acid (DCA) and lithocholic acid (iso-LCA) in the stool. Potato fiber is a by-product of starch production and is rich in dietary fiber such as pectin, cellulose, hemicellulose, and resistant starch, which can be utilized and metabolized by gut microbiota to produce SCFAs. One of the representatives, FiberBind 400, is a commercially available potato fiber product. In the Gastro-Intestinal Model (TIM)-2 colon model assay, the ingestion of FiberBind 400 increased the intestinal survival of exogenous Lactobacillus fermentum PCC®, Lactobacillus rhamnosus LGG®, Lactobacillus reuteri RC-14®, Lactobacillus paracasei F-19® and was also found to promote the growth of intestinal Oscillospira by cross-feeding effect. However, there were also some prebiotics and substances with prebiotic-like properties that were negatively correlated with the abundance of Oscillospira. Zhu et al. found that oat β-glucan (OG), oat resistant starch (ORS), and whole oat foods (WO) significantly improved symptoms in the type II diabetic rats and reduced their gut Oscillospira abundance. Cui et al. found that the marine-animal-derived Cereus sinensis polysaccharide (CSP-1) significantly increased thymus, spleen index, and total SCFAs production in mice and decreased Oscillospira abundance, and they hypothesized that CSP-1 might be a potential prebiotic.

Taken together, probiotics and prebiotics typically exhibit health-promoting effects in poultry farming as well as in specific disease-related animal models, where the vast majority of probiotics or prebiotics intake can directly or indirectly increase the abundance of Oscillospira in the host intestinal, whereas, a small number do the opposite, the up-or down-regulation of Oscillospira abundance appears to be associated with specific strains or specific prebiotics.

Heavy metal

Studies on the effects of heavy metals on the gut microbiota and host health represent a significant portion of the overall intestinal microbiota-related research. There is growing epidemiological evidence revealed that heavy metals may contribute to and influence the progression of various metabolic diseases whose etiology and progression are due, in part, to heavy metal-induced disorders of the gut microbiota., By studying the effects of different doses of lead (Pb) exposure on the gut microbiota and gut barrier in mice, Yu et al. found that with increasing doses of Pb, damage to mouse colonic tissue increased, while the relative abundance of Coprococcus and Oscillospira in the gut decreased linearly, while Lactobacillus increased, and Pb exposure had significant effects on the three genera in a dose-dependent manner. It has been shown that Pb and cadmium (Cd) exposure can affect the concentration of SCFAs by altering the abundance of related microbes that produce SCFAs, such as Ruminococcus, Bacteroides, Oscillospira. Several studies have shown that Oscillospira produced butyrate and propionate, increased cupped cell and mucus production, maintained the integrity of the intestinal epithelium, and reduced Pb absorption, thereby reducing colonic tissue damage and inflammation., Chi et al. found that 4-week-old C57BL/6 female mice ingested drinking water containing 100 ppb arsenic (As) for 13 weeks showed a significant decrease in the Oscillospira abundance, but this was accompanied by an increase in Akkermansia and Bifidobacterium abundance. Similarly, Gao et al. found a significant decrease in the abundance of Oscillospira in the gut of female mice that ingested drinking water containing 10 ppm Pb for 13 weeks, a phenomenon consistent with those results of the experiment by Yu et al. In addition, Oscillospira appears to be equally sensitive to other heavy metals, such as copper and silver, which can significantly affect the proportion of Oscillospira in the gut of rats., However, there were also heavy metals that positively correlated with Oscillospira abundance, such as Hg exposure that caused intestinal damage in mice and increased their intestinal Oscillospira abundance, and this phenomenon was further confirmed in another study. Notably, it has been shown that higher concentrations of lead, arsenic, copper, zinc, mercury, calcium, and magnesium in the pediatric autism spectrum disorder (ASD) population, especially As and Hg concentrations, were associated with intestinal Oscillospira abundance was highly correlated.

The effect of different heavy metals on the abundance of Oscillospira in the gut varies. The up-or down-regulation of Oscillospira abundance alone does not seem to indicate whether a specific heavy metal has a positive or negative effect on the host health. Therefore, the patterns of Oscillospira abundance under different heavy metal exposures need to be further explored, and this genus may also have the potential to be used as one of the indicators for assessing the degree of heavy metal contamination.

Natural products

The effect of natural products on the intestinal microbiota has been studied more frequently; among them, polyphenols seem to be able to play an important role on the host microbiota. Millet shell polyphenols (MSPs) extracted from the cereal husks have anti-atherosclerotic effects in vitro. Liu et al. used ApoE-/- mice fed a high-fat diet as experimental subjects to investigate the anti-atherosclerotic activity of MSPs in vivo and found that MSPs effectively inhibited the development of atherosclerotic plaques, reduced the levels of related inflammatory factors, and significantly upregulated the expression levels of tight junction proteins (ocludin, zona occludens-1 and claudin 1) at the mRNA and protein levels; also, MSPs significantly altered the structure of mouse gut microbiota, in which Oscillospira and Ruminococcus were significantly enriched. TOTUM-63 (T-63) is a polyphenol-rich plant extract that can have beneficial effects on the body weight and the insulin resistance in mice on a high-fat diet (HFD). The combination of high-intensity interval training (HIIT) and T-63 was applied to a Western diet-induced obesity rat model, and it was found that this combined modality significantly limited the weight gain and improved the blood glucose levels in the rats, while their Oscillospira abundance was also significantly increased. Green tea polyphenols (GTP) can also improve the abundance of Oscillospira in the gut of female sprague-dawley rats. However, polyphenols were also not all positively correlated with Oscillospira abundance. It has been shown that Qingzhuan tea (QZT) has significant anti-obesity, free radical scavenging, antioxidant, inhibiting the proliferation of 3 T3-L1 preadipocytes and other health effects., Feng et al. found that QZT extract ameliorated gut microbiota-mediated metabolic disorders in the high-fat mice and reduced the abundance of Oscillospira, which was significantly positively associated with the metabolic syndrome. In addition to polyphenols, some other active products have similar effects. Capsaicin (CAP) is an active ingredient in chili peppers with a variety of pharmacological activities and potential effects on psychiatric disorders. CAP was found to improve depression and serum levels of 5-hydroxytryptamine (5-HT) and tumor necrosis factor-α (TNF-α) in mice with lipopolysaccharide (LPS)-induced depressive-like behavior and to significantly upregulate the relative abundance of key microbes such as Oscillospira. Liu et al. found that Oscillospira became the dominant genus in the gut of β-patchoulene (β-PAE)-treated mice with colitis. Macleaya cordata contains many important alkaloids, including sanguinarine, chelerythrine, protopine, allocryptopine, and phenolic acids. The addition of Macleaya cordata extract (MCE) as a dietary supplement to pig feed improved their growth performance and reduced the diarrhea score., Li et al. found that MCE intake significantly increased the relative abundance of Oscillospira in the jejunum of weaned pigs. Cranberry pomace (CBP) is rich in polyphenols, complex carbohydrates, fiber and nutritional minerals. Continuous addition of CBP during the rearing of broiler chickens eventually significantly increased the abundance of Oscillospira in their gut. Blueberry malvidin-3-galactoside (Blueberry M3G) also increased the gut microbial diversity in mice and significantly increased the abundance of Oscillospira and Ruminococcus. Chen et al. found that polysaccharide was derived from pueraria lobata (PPL) not only reduced the isovaleric acid concentrations in the normal mice, but also significantly increased Oscillospira abundance and ultimately alleviated antibiotic-associated diarrhea (AAD) induced colonic pathological changes and dysbiosis of intestinal flora in mice. Gut microbiota also plays an important role in improving cognition and shaping behavior., Mailing et al. found that 5% pectin mixed with 5% cellulose improved mice learning and memory and significantly increased their gut Oscillospira abundance. Likewise, gut microbiota plays a crucial role in food allergies. In a study of changes in the gut microbiota in patients with wheat-dependent exercise-induced anaphylaxis (WDEIA), Oscillospira was positively associated with the ω-5 alcohol-soluble protein-specific immunoglobulin E (IgE), whereas Bifidobacterium was significantly negatively correlated with the total IgE levels. Another study found that Oscillospira was highly enriched in the gut of milk-tolerant infants compared to children who remained allergic after treatment with extensively hydrolyzed casein formula plus Lactobacillus rhamnosus GG (EHCF + LGG). However, there was a negative correlation between some natural products and Oscillospira abundance. Zhang et al. found that Sophora alopecuroides (Leguminosae) L.-derived alkaloids improved depression-like behaviors and depression-related indicators in the chronic unpredictable mild stress (CUMS)-induced depression model mice and decreased Oscillospira abundance. Yang et al. found that the high-fat-diet-fed mice treated with flaxseed polysaccharide (FSP) had significantly decreased their serum fasting glucose, total triglyceride and total cholesterol levels and significantly increased the proportion of beneficial Akkermansia and Bifidobacterium ratio, while decreasing the proportion of Oscillospira. Thomaz et al. found that wasabi powder significantly improved the health status of diet-induced obese rats and down-regulated their intestinal Oscillospira abundance.

Taken together, the natural products represented by polyphenols were able to significantly improve the health status of animal models for specific diseases, particularly metabolic diseases such as obesity caused by high-fat diets, and were accompanied by a significant upregulation of intestinal Oscillospira abundance. In addition, other natural active products showed beneficial effects on host health in general, but the abundance of Oscillospira under the action of different products varied considerably, and more studies are needed to explore these relationships.

Pharmacological interventions

Pharmacological interventions have an important impact on the gut microbiota., Age-related macular degeneration (AMD) is the main cause of visual impairment in the elderly. Treatment of AMD mice with etifoxine significantly reduced the abundance of Oscillospira in the gut. Etifoxine is also a therapeutic agent for obesity, which was found to down-regulate the relative abundance of Oscillospira in the obese mouse model. Hydroxychloroquine (HCQ) is a widely used antimalarial drug that is recommended for the treatment of coronavirus disease 2019 (COVID-19). Short-term high-dose HCQ stimulation in mice altered the structure of their gut microbiota, in particular the abundance of Oscillospira, but did not affect their intestinal integrity and immune response. Kong et al. found that fungicide thiram disrupted the gut microbiota of chickens, causing disruption of lipid metabolism and significantly reducing the abundance of Oscillospira. However, the intervention of some drugs can increase the relative abundance of Oscillospira. For example, trifluoromethanesulfonic acid (TFMS)-treated mice showed increased abundance of Oscillospira. Wu et al. consistently treated C57BL/6 J mice with fungicide propamocarb and found that their bile acid metabolism was disturbed and Oscillospira abundance was increased. Liu et al. found a significant positive correlation between immunoglobulin G (IgG) and Oscillospira abundance in the gut of male Brandt’s voles (Lasiopodomys brandtii), with a concomitant increase in Oscillospira abundance with increasing IgG concentration. During the pharmacological interventions, the gut and gut microbiota are the central sites of drug metabolism and drug efficacy, and the metabolic process of different drugs may have the participation of different gut microbes, while the variation of Oscillospira abundance may also vary from drug to drug.

Exercise and diet

Dietary structure and exercise patterns have been shown to influence the host health and the gut microbial composition., Plissonneau et al. found that the high-intensity interval training (HIIT) had a significant effect on the gut microbial diversity in Wistar rats and that HIIT alone only had a significant effect on their body fat mass, but when HIIT was combined with linseed oil (LO) improved the conversion of α-linolenic acid (ALA) to docosahexaenoic acid (DHA) and significantly increased the relative abundance of Oscillospira in the colonic microbiota. Notably, neither HIIT nor LO alone resulted in significant changes in the intestinal mucosa-associated flora, but when used in combination, it significantly increased Oscillospira abundance. The results of that study were similar to those of previous studies in that Oscillospira was negatively correlated with the body mass index (BMI), and positively correlated with leanness. Similarly, Maillard et al. found a significant increase in the abundance of Oscillospira in the gut microbiota of mice after their spontaneous physical activity (PA), accompanied by a significant increase in the level of SCFAs. Two animal experiments showed a strong correlation between Oscillospira abundance, lactate levels, and exercise intensity., In a population-based trial, Haro et al. found that obese people on a Mediterranean diet for one year showed a decrease in the gut Prevotella abundance and a significant increase in Oscillospira abundance. Thus, Oscillospira is considered as a possible next-generation probiotic candidate for weight loss and fat reduction. In a randomized controlled trial, short-term consumption of almonds also increased Oscillospira abundance in healthy adults. A high-fat diet has been considered a non-healthy diet. Thomaz et al. found that a high-fat diet increased Oscillospira abundance in the gut of rats, however, the opposite result was seen in another animal test, where Schots et al. found a significant decrease in Oscillospira abundance in the gut of female mice on a high-fat diet, and it is unknown whether this is due to species differences. In addition, He et al. found that fasting reduced the relative abundance of Oscillospira in the human intestine, suggesting that calorie restriction may have a negative regulatory effect on Oscillospira. Overall, appropriate exercise patterns and moderate exercise levels appear to increase the relative abundance of Oscillospira in both human and animal, while an accepted healthy dietary structure also positively regulates the increase in Oscillospira abundance.

Other factors

Oscillospira was first discovered in the rumen of animals, and feed and grazing practices have had a wide impact on this intestinal organism. Ahmad et al. found that the combination of grazing and concentrate supplement significantly increased the abundance of Oscillospira in the rumen flora of yak (Bos grunniens). The cecum microbiota plays an important role in the host food digestion and nutrient absorption, and to some extent affects feed efficiency (FE). Notably, Oscillospira showed a stronger positive correlation in the high feed efficiency group (HFE) than that in the low feed efficiency group (LFE). O. guilliermondii was detected in the rumen of several herbivorous animals, including cattle and sheep, and the abundance of this organism was significantly higher especially when the diet was fresh forage. However, in the opposite case, Yan et al. fed geese with fermented feed diets prepared by co-fermentation of Bacillus, Lactobacillus, and yeast with corn, soybean meal, and wheat bran and found a significant downregulation of Oscillospira abundance.

Heat stress also down-regulated the abundance of Oscillospira in the broilers’ intestine. Oscillospira is commonly found in the gut of herbivores in high-altitude environments, accounting for nearly 20% of the total microbiota. Host characteristics such as sex and age are closely related to the structure and function of the gut microbiota. Sequencing analysis of rhesus macaques (Macaca mulatta) fecal samples revealed that female macaques had higher levels of alpha diversity and a more distinctive microbial structure than males, and those mature individuals had a higher abundance of Oscillospira compared to immature individuals. Similarly, the abundance of Oscillospira in male and female ASD rodent models exhibited substantial differences, and these differences may be due to sex specificity., Xi et al. found that the abundance of Oscillospira in the gut of specific-pathogen-free chickens decreased with increasing age. Maron et al. found that Oscillospira was commonly found in the gut of older calves compared to younger calves.

Oscillospira-related diseases

In studies of gut microbiota and their related diseases, Oscillospira often appears in high-throughput sequencing data, and it is particularly noteworthy that Oscillospira abundance fluctuates widely in some specific diseases. Here, we give a summary of diseases positively or negatively associated with Oscillospira (Table 2).

Diseases positively associated with oscillospira

Data from animal experiments show that a high-fat diet appears to promote an increase in intestinal Oscillospira abundance. Compared to the normal group (NOR), the mice on the high-fat diet-induced obesity and showed dysbiosis of the intestinal flora, with a significantly higher abundance of Oscillospira, a result that was also seen in another high-fat diet mouse test. Oscillospira abundance in the gut of Type 2 diabetes mellitus (T2DM) rats was positively correlated with the development of diabetes and inflammation, however, in contrast, Oscillospira abundance in another trial was extremely low. In the dextran sulfate sodium (DSS)-induced ulcerative colitis in mice test, DSS was observed to increase the percentage of Oscillospira in the gut. Zhang et al. found that patients with chronic kidney disease (CKD) had a high abundance of Oscillospira in the gut. There is also a close association between central neurological and degenerative disorders and Oscillospira. Parkinson’s disease (PD) patients also had a high abundance of Oscillospira, but this result showed the opposite trend in another study. Zhai et al. sequenced and analyzed the gut microbiota of ASD children and found that Oscillospira significantly increased. In another study of CUMS-induced depression-like mice, CUMS induction resulted in increased abundance of Oscillospira, while this genus decreased after Kai-Xin-San (KXS) treatment. What can be determined is that, Oscillospira is directly associated with gallstones and this organism can be used as a biomarker for symptomatic gallstone formation. Keren et al. found that patients with gallstones had higher total fecal bile acids (BAs) concentrations and lower microbial diversity, accompanied by increased abundance of Oscillospira, which was further analyzed and found to be positively correlated with secondary BAs and negatively correlated with primary BAs. It was worth noting that slow transmission/constipation was a definite risk factor in the formation of gallstones. It has been shown that fast colonic transit times select for fast-growing microbes, while slower transit/constipation allows slower replicating organisms to remain in the lumen and avoid being eluted. Oscillospira showed high abundance in this case, most likely due to its slow growth and thus benefiting from a slow transit time in the gut. Thus, a high abundance of Oscillospira was positively correlated with constipation, especially in the female population with chronic constipation, and this correlation was very strong.

Diseases negatively associated with oscillospira

Currently, several studies have shown that inflammation is strongly associated with Oscillospira, and most of them have a negative correlation. Xu et al. found that Oscillospira abundance was negatively correlated with disease severity in patients with ulcerative colitis (UC). Lima et al. found a lower abundance of Oscillospira in the gut of children with inflammatory bowel disease (IBD). A significantly lower abundance of Oscillospira was also found in the gut of Crohn’s disease (CD) patients and pediatric nonalcoholic fatty liver disease (NALD) patients., Aging is a low-grade chronic inflammation characterized by elevated circulating levels of inflammatory mediators. This chronic inflammation occurs in the absence of obvious infection is called inflammation and is a risk factor for morbidity and mortality in the elderly population. In addition, the important role of gut microbiota perturbation with aging has been revealed, and a growing body of literature suggests that age-related gut microbiota dysbiosis contributes to the overall inflammatory status of older adults. Among them, Oscillospira showed a strong negative correlation with pro-inflammatory monocyte chemoattractant protein-1 (MCP-1). Childhood obesity is a global health problem, and gut microbiota plays an extremely important role in obesity. Chen et al. found a significant decrease in the abundance of Oscillospira in the overweight children gut. Similarly, Verdam et al. found a significant decrease in Oscillospira abundance in the gut of obesity-associated diabetic patients, while O. guillermondii was significantly decreased in obese patients with local and systemic inflammation. Fragile X syndrome (FXS) is a neurodevelopmental disorder that is considered to be the most common cause of genetic intellectual disability and one of the major predisposing factors for autism., Altimiras et al. found that Oscillospira abundance was significantly downregulated in the gut of FXS mouse models. A strong correlation between Oscillospira and several depression-related indicators was also previously confirmed in another trial. This relationship appears to be further supported by data from a population-based experiment, where Johnson et al. found that social competence (a composite measure of participants’ extraversion, social skills, and communication ability) was highly positively correlated with Akkermansia, Lactococcus, and Oscillospira, among them, Oscillospira was more abundant in individuals with higher sociality scores. Tian et al. studied mice exposed to chronic alcohol intake by analyzing gut microbiota and liver injury parameters and found that the development of ALD was accompanied by a significant decrease in Oscillospira abundance. Clinically, Oscillospira abundance was also negatively correlated with hepatic fat; the abundance of Oscillospira in the gut of pediatric nonalcoholic fatty liver disease (NAFLD) and nonalcoholic steatohepatitis (NASH) patients was similarly reduced. Currently, reduced Oscillospira accompanied by increased 2-butanone has been identified as a gut microbiota signature of NAFLD onset. Lung cancer pathogenesis was accompanied by a significant decrease in Oscillospira abundance, with a negative correlation between the two. A study of gut microbiota and stool softness/hardness in European adults showed that Oscillospira abundance was positively correlated with harder stools and negatively correlated with loose stools.

Potential applications of oscillospira

Oscillospira is currently described only in high-throughput sequencing data related to the gut microbiota. Pure cultures of this organism have not been obtained and therefore, the actual biology, function, and specific role of Oscillospira in the gut microbiota and human health have not been conclusively established. The current description of Oscillospira is mainly reflected in the variation of its abundance in different environments. Through multiple studies in Table 2, we found that Oscillospira is highly associated with obesity and obesity-related chronic inflammatory and metabolic diseases and that Oscillospira abundance is significantly decreased in this category of disease. In addition, several studies have confirmed that Oscillospira is strongly associated with leanness or lower BMI in children and adults, and shows a high degree of heritability.,,, Numerous evidences suggest that Oscillospira abundance plays an important role in the metabolic activities associated with obesity in humans. Oscillospira may be a next-generation probiotic candidate with weight loss, lipid-lowering, slimming, and metabolic syndrome-relieving effects, and it has great potential for health applications. In addition, there is an association between Oscillospira and central nervous system disorders and degenerative diseases, but more studies are needed to reveal the underlying mechanisms as the evidence is scarce and the causality has not been confirmed. It is noteworthy that Oscillospira is more abundant in people with gallstones and chronic constipation, and it is not known what role this organism play can either foster health or contribute to disease in the development of such diseases. It should be seen that Oscillospira plays an important role in the gut microbiota and its abundance is closely related to the host health. External interventions such as probiotics, prebiotics, polyphenols, diet, and exercise can significantly influence the abundance of Oscillospira in the gut, which opens up the possibility of targeted interventions for the prevention, mitigation, and treatment of specific diseases mediated by intestinal flora, such as obesity and obesity-related diabetes. In the future, microecological formulations with Oscillospira as the core may bring new options for food, nutraceuticals, and biopharmaceuticals for consumption or medicinal use.

Conclusions

Overall, Oscillospira exhibited beneficial microbial traits. In particular, Oscillospira directly or indirectly exhibits positive regulatory effects in areas related to obesity and chronic inflammation. Therefore, Oscillospira has the potential to be developed as the next generation of probiotics. In the future, more preclinical and clinical studies are needed to confirm the efficacy of Oscillospira in different diseases, and until then, if the pure culture technology of this organism can be overcome, then it will greatly accelerate its development and application process.

References 149

  1. 1.

    Renwick S, Ganobis CM, Elder RA, Gianetto-Hill C, Higgins G, Robinson AV,Vancuren SJ, Wilde J, Allen-Vercoe E. Culturing human gut microbiomes in the laboratory. Annu Rev Microbiol. 2021;75(1). doi:.

    Not in our library10.1146/annurev-micro-031021-084116

  2. 2.

    Konikoff T, Gophna U. Oscillospira: a central, enigmatic component of the human gut microbiota. Trends Microbiol. 2016;24(7):523–18. doi:.

    Not in our library10.1016/j.tim.2016.02.015

  3. 3.

    Gophna U, Konikoff T, Nielsen HB. Oscillospira and related bacteria - From metagenomic species to metabolic features. Environ Microbiol. 2017;19(3):835–841. doi:.

    Not in our library10.1111/1462-2920.13658

  4. 4.

    Keren N, Konikoff FM, Paitan Y, Gabay G, Reshef L, Naftali T,Gophna U. Interactions between the intestinal microbiota and bile acids in gallstones patients. Env Microbial Rep. 2015;7(6):874–880. doi:.

    Not in our library10.1111/1758-2229.12319

  5. 5.

    Louis P, Hold GL, Flint HJ. The gut microbiota, bacterial metabolites and colorectal cancer. Nat Rev Microbial. 2014;12(10):661–672. doi:.

    Not in our library10.1038/nrmicro3344

  6. 6.

    Almeida D, Machado D, Andrade JC, Mendo S, Gomes AM, Freitas AC. Evolving trends in next-generation probiotics: a 5W1H perspective. Crit Rev Food Sci Nutr. 2019;1–14. doi:.

    Not in our library10.1080/10408398.2019.1599812

  7. 7.

    Kamagata Y. Oscillospira bergey’s manual of systematics of archaea and bacteria, 2015:1–6.

    Not in our library

  8. 8.

    Yanagita K, Manome A, Meng XY, Hanada S, Kanagawa T, Tsuchida T,Mackie RI, Kamagata Y. Flow cytometric sorting, phylogenetic analysis and in situ detection of Oscillospira guillermondii, a large, morphologically conspicuous but uncultured ruminal bacterium. Int J Syst Evol Micr. 2003;53(5):1609–1614. doi:.

    Not in our library10.1099/ijs.0.02541-0

  9. 9.

    Mackie RI, Aminov RI, Hu WP, Klieve AV, Ouwerkerk D, Sundset MA,Kamagata Y. Ecology of uncultivated oscillospira species in the rumen of cattle, sheep, and reindeer as assessed by microscopy and molecular approaches. Applied and Environmental Microbiology. 2003;69(11):15–13145. doi:.

    Not in our library10.1073/pnas.1412008111

  10. 10.

    Katano Y, Fujinami S, Kawakoshi A, Nakazawa H, Oji S, Iino T, Oguchi A, Ankai A, Fukui S, Terui Y, et al. Complete genome sequence of Oscillibacter valericigenes Sjm18-20(T) (=NBRC 101213(T)). Stand Genomic Sci. 2012;6(3):406–414. doi:.

    Not in our library10.4056/sigs.2826118

  11. 11.

    Farhadfar N, Gharaibeh RZ, Dahl WJ, Mead L, Newsome R, IrrizayGatell V, Weaver MT, Al-Mansour Z, Jobin C, Lyon D, et al. Gut microbiota dysbiosis associated with persistent fatigue in hematopoietic cell transplantation survivors. Tran Cellul Ther. 2021; doi:.

    Not in our library10.1016/j.jtct.2021.02.017

  12. 12.

    Ji M, Du H, Xu Y. Structural and metabolic performance of p-cresol producing microbiota in different carbon sources. Food Research International. 2020;132:109049. doi:.

    Not in our library10.1016/j.foodres.2020.109049

  13. 13.

    Vandeputte D, Falony G, Vieira-Silva S, Tito RY, Joossens M, Raes J. Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates. Gut. 2016;65(1):57–62. doi:.

    Not in our library10.1136/gutjnl-2015-309618

  14. 14.
  15. 15.

    Zhao S, Peng X, Zhou Q-Y, Huang Y, Rao X, Tu J-L, Xiao H-Y, Liu D-M. Bacillus coagulans 13002 and fructo-oligosaccharides improve the immunity of mice with immunosuppression induced by cyclophosphamide through modulating intestinal-derived and fecal microbiota. Food Res Int. 2021;140. doi:.

    Not in our library10.1016/j.foodres.2020.109793

  16. 16.

    Keerqin C, Rhayat L, Zhang ZH, Gharib-Naseri K, Kheravii SK, Devillard E, Crowley TM, Wu SB. Probiotic Bacillus subtilis 29,784 improved weight gain and enhanced gut health status of broilers under necrotic enteritis condition. Poult Sci. 2021;100(4):100981. doi:.

    Not in our library10.1016/j.psj.2021.01.004

  17. 17.

    Arreguin-Nava MA, Graham BD, Adhikari B, Agnello M, Selby CM, Hernandez-Velasco X, Vuong CN, Solis-Cruz B, Hernandez-Patlan D, Latorre JD, et al. Evaluation of in ovo Bacillus spp based probiotic administration on horizontal transmission of virulent Escherichia coli in neonatal broiler chickens. Poult Sci. 2019;98(12):6483–6491. doi:.

    Not in our library10.3382/ps/pez544

  18. 18.

    Tian X, Li R, Jiang Y, Zhao F, Yu Z, Wang Y,Dong Z, Liu P, Li X. Bifidobacterium breve ATCC15700 pretreatment prevents alcoholic liver disease through modulating gut microbiota in mice exposed to chronic alcohol intake. J Funct Foods. 2020;72. doi:.

    Not in our library10.1016/j.jff.2020.104045

  19. 19.

    Pan L, Han Y, Zhou Z. In vitro prebiotic activities of exopolysaccharide from Leuconostoc pseudomesenteroides XG5 and its effect on the gut microbiota of mice. J Funct Foods. 2020;67. doi:.

    Not in our library10.1016/j.jff.2020.103853

  20. 20.

    Gao J, Ding G, Li Q, Gong L, Huang J, Sang Y. Tibet kefir milk decreases fat deposition by regulating the gut microbiota and gene expression of Lpl and Angptl4 in high fat diet-fed rats. Food Res Int. 2019;121:278–287. doi:.

    Not in our library10.1016/j.foodres.2019.03.029

  21. 21.

    Gamallat Y, Ren X, Meyiah A, Li M, Ren X, Jamalat Y, Song S, Xie L, Ahmad B, Shopit A, et al. The immune-modulation and gut microbiome structure modification associated with long-term dietary supplementation of Lactobacillus rhamnosus using 16S rRNA sequencing analysis. Journal of Functional Foods. 2019;53:227–236. doi:.

    Not in our library10.1016/j.jff.2018.12.029

  22. 22.

    Liu M, Xie W, Wan X, Deng T. Clostridium butyricum modulates gut microbiota and reduces colitis associated colon cancer in mice. International Immunopharmacology. 2020;88:106862. doi:.

    Not in our library10.1016/j.intimp.2020.106862

  23. 23.

    Chen Q, Liu M, Zhang P, Fan S, Huang J, Yu S, Zhang C, Li H. Fucoidan and galactooligosaccharides ameliorate high-fat diet-induced dyslipidemia in rats by modulating the gut microbiota and bile acid metabolism. Nutrition. 2019;65:50–59. doi:.

    Not in our library10.1016/j.nut.2019.03.001

  24. 24.

    Rubio-Del-Campo A, Gozalbo-Rovira R, Moya-Gonzalvez EM, Alberola J, Rodriguez-Diaz J, Yebra MJ. Infant gut microbiota modulation by human milk disaccharides in humanized microbiome mice. Gut Microbes. 2021;13(1):1–20. doi:.

    Not in our library10.1080/19490976.2021.1914377

  25. 25.

    Li R, Andreu-Sanchez S, Kuipers F, Fu J. Gut microbiome and bile acids in obesity-related diseases. Best Pract Res Cl En. 2021;35. doi:.

    Not in our library10.1016/j.beem.2021.101493

  26. 26.

    Larsen N, de Souza CB, Krych L, Kot W, Leser TD, Sorensen OB, Blennow A, Venema K, Jespersen L. Effect of potato fiber on survival of Lactobacillus species at simulated gastric conditions and composition of the gut microbiota in vitro. Food Res Int. 2019;125:108644. doi:.

    Not in our library10.1016/j.foodres.2019.108644

  27. 27.

    Zhu Y, Dong L, Huang L, Shi Z, Dong J, Yao Y,Shen R. Effects of oat β-glucan, oat resistant starch, and the whole oat flour on insulin resistance, inflammation, and gut microbiota in high-fat-diet-induced type 2 diabetic rats. J Funct Foods. 2020;69. doi:.

    Not in our library10.1016/j.jff.2020.103939

  28. 28.

    Cui M, Zhang M, Wu J, Han P, Lv M, Dong L, Liu K. Marine polysaccharides from gelidium pacificum okamura and cereus sinensis reveal prebiotic functions. Int J Biol Macromol. 2020;164:4381–4390. doi:.

    Not in our library10.1016/j.ijbiomac.2020.08.255

  29. 29.

    Yu L, Yu Y, Yin R, Duan H, Qu D, Tian F, Narbad A, Chen W, Zhai Q. Dose-dependent effects of lead induced gut injuries: an in vitro and in vivo study. Chemosphere. 2021;266:129130. doi:.

    Not in our library10.1016/j.chemosphere.2020.129130

  30. 30.

    Duan H, Yu L, Tian F, Zhai Q, Fan L, Chen W. Gut microbiota: a target for heavy metal toxicity and a probiotic protective strategy. Sci Total Environ. 2020;742:140429. doi:.

    Not in our library10.1016/j.scitotenv.2020.140429

  31. 31.

    Gao B, Chi L, Mahbub R, Bian X, Tu P, Ru H, Lu K. Multi-omits reveals that lead exposure disturbs gut microbiome development, key metabolites, and metabolic pathways. Chem Res Toxicol. 2017;30(4):996–1005. doi:.

    Not in our library10.1021/acs.chemrestox.6b00401

  32. 32.

    Chi L, Bian X, Gao B, Tu P, Ru H, Lu K. The effects of an environmentally relevant level of arsenic on the gut microbiome and its functional metagenome. Toxicological Sciences. 2017;160(2):193–204. doi:.

    Not in our library10.1016/j.foodres.2019.03.029

  33. 33.

    Meng X-L, Li S, Qin C-B, Zhu Z-X, Hu W-P, Yang L-P, Lu R-H, Li W-J, Nie G-X. Intestinal microbiota and lipid metabolism responses in the common carp (Cyprinus carpio L.) following copper exposure. Ecotox Environ Safe. 2018;160:77–83. doi:.

    Not in our library10.1016/j.ecoenv.2018.05.050

  34. 34.

    Javurek AB, Suresh D, Spollen WG, Hart ML, Hansen SA, Ellersieck MR, Bivens NJ, Givan SA, Upendran A, Kannan R, et al. Gut Dysbiosis and neurobehavioral alterations in rats exposed to silver nanoparticles. Sci Rep-UK. 2017;7. doi:.

    Not in our library10.1038/s41598-017-02880-0

  35. 35.

    Zhao Y, Zhou C, Wu C, Guo X, Hu G, Wu Q, Xu Z, Li G, Cao H, Li L, et al. Subchronic oral mercury caused intestinal injury and changed gut microbiota in mice. Sci Total Environ. 2020;721:137639. doi:.

    Not in our library10.1016/j.scitotenv.2020.137639

  36. 36.

    Ruan Y, Wu C, Guo X, Xu Z, Xing C, Cao H, Zhang C, Hu G, Liu P. High doses of copper and mercury changed cecal microbiota in female mice. Biological Trace Element Research. 2019;189(1):134–144. doi:.

    Not in our library10.1007/s12011-018-1456-1

  37. 37.

    Liu F, Shan S, Li H, Shi J, Hao R, Yang R, Li Z. Millet shell polyphenols prevent atherosclerosis by protecting the gut barrier and remodeling the gut microbiota in ApoE-/- mice. Food Funct. 2021; doi:.

    Not in our library10.1039/d1fo00991e

  38. 38.

    Dupuit M, Chavanelle V, Chassaing B, Perriere F, Etienne M, Plissonneau C, Boscaro A, Barnich N, Pialoux V, Maugard T, et al. The TOTUM-63 supplement and high-intensity interval training combination limits weight gain, improves glycemic control, and influences the composition of gut mucosa-associated bacteria in rats on a high fat diet. Nutrients. 2021;13. doi:.

    Not in our library10.3390/nu13051569

  39. 39.

    Wang J, Tang L, Zhou H, Zhou J, Glenn TC, Shen C-L, Wang JS. Long-term treatment with green tea polyphenols modifies the gut microbiome of female sprague-dawley rats. The Journal of Nutritional Biochemistry. 2018;56:55–64. doi:.

    Not in our library10.1038/nrmicro3344

  40. 40.

    Feng L, Zhou J, Zhang L, Liu P, Zheng P, Gao S, Song C, Yu Y, Gong Z, Wan X. Gut microbiota-mediated improvement of metabolic disorders by Qingzhuan tea in high fat diet-fed mice. J Funct Foods. 2021;78. doi:.

    Not in our library10.1016/j.jff.2021.104366

  41. 41.

    Xia J, Gu L, Guo Y, Feng H, Chen S, Jurat J, Fu W, Zhang D. Gut microbiota mediates the preventive effects of dietary capsaicin against depression-like behavior induced by lipopolysaccharide in mice. Front Cell Infect Mi. 2021;11. doi:.

    Not in our library10.3389/fcimb.2021.627608

  42. 42.

    Liu Y, Wu J, Chen L, Wu X, Gan Y, Xu N, Li M, Luo H, Guan F, Su Z, et al. beta-patchoulene simultaneously ameliorated dextran sulfate sodium-induced colitis and secondary liver injury in mice via suppressing colonic leakage and flora imbalance. Biochem Pharmacol. 2020;182:114260. doi:.

    Not in our library10.1016/j.bcp.2020.114260

  43. 43.

    Li Y, Xu F, Tong X, Chen R, Shen C, Liang T, Chu Q, Zhou B. Effects of Macleaya cordata extract on small intestinal morphology and gastrointestinal microbiota diversity of weaned pigs. Livest Sci. 2020;237. doi:.

    Not in our library10.1016/j.livsci.2020.104040

  44. 44.

    Islam MR, Hassan YI, Das Q, Lepp D, Hernandez M, Godfrey DV, Orban S, Ross K, Delaquis P, Diarra MS, et al. Dietary organic cranberry pomace influences multiple blood biochemical parameters and cecal microbiota in pasture-raised broiler chickens. J Funct Foods. 2020;72. doi:.

    Not in our library10.1016/j.jff.2020.104053

  45. 45.

    Cheng Z, Lin J, Gao N, Sun X, Meng X, Liu R, Liu Y, Wang W, Li B, Wang Y, et al. Blueberry malvidin-3-galactoside modulated gut microbial dysbiosis and microbial TCA cycle KEGG pathway disrupted in a liver cancer model induced by HepG2 cells. Food Science and Human Wellness. 2020;9(3):245–255. doi:.

    Not in our library10.1016/j.fshw.2020.04.006

  46. 46.

    Chen R, Liu B, Wang X, Chen K, Zhang K, Zhang L, Fei C, Wang C, Yingchun L, Xue F. Effects of polysaccharide from Pueraria lobata on gut microbiota in mice. Int J Biol Macromol. 2020; doi:.

    Not in our library10.1016/j.ijbiomac.2020.04.201

  47. 47.

    Mailing LJ, Allen JM, Pence BD, Rytych J, Sun Y, Bhattacharya TK, Park P, Cross TL, McCusker RH, Swanson KS, et al. Behavioral response to fiber feedingis cohort-dependent and associated with gut microbiota composition in mice. Behav Brain Res. 2019;359:731–736. doi:.

    Not in our library10.1016/j.bbr.2018.09.012

  48. 48.
  49. 49.

    Zhang M, Li AQ, Yang QF, Li JY, Wang LH, Liu XX, Huang YX, Liu L. Beneficial Effect of Alkaloids From Sophora alopecuroides L on CUMS-induced depression model mice via modulating gut microbiota. Front Cell Infect Mi. 2021;11:14. doi:.

    Not in our library10.3389/fcimb.2021.665159

  50. 50.

    Yang C, Xu Z, Deng Q, Huang Q, Wang X, Huang F. Beneficial effects of flaxseed polysaccharides on metabolic syndrome via gut microbiota in high-fat diet fed mice. Food Res Int. 2020;131:108994. doi:.

    Not in our library10.1016/j.foodres.2020.108994

  51. 51.

    Thomaz FS, Tomsett KI, Panchal SK, Worrall S, Dekker Nitert M. Wasabi supplementation alters the composition of the gut microbiota of diet-induced obese rats. J Funct Foods. 2020;67. doi:.

    Not in our library10.1016/j.jff.2020.103868

  52. 52.

    Biswas L, Ibrahim KS, Li X, Zhou X, Zeng Z, Craft J,Shu X. Effect of a TSPO ligand on retinal pigment epithelial cholesterol homeostasis in high-fat fed mice, implication for age-related macular degeneration. Exp Eye Res. 2021;208:108625. doi:.

    Not in our library10.1016/j.exer.2021.108625

  53. 53.

    Ibrahim KS, Craft JA, Biswas L, Spencer J, Shu X. Etifoxine reverses weight gain and alters the colonic bacterial community in a mouse model of obesity. Biochemical Pharmacology. 2020;180:114151. doi:.

    Not in our library10.1152/japplphysiol.00038.2018

  54. 54.

    Pan ZY, Chang YX, Han N, Hou FY, Lee BJY, Zhi FC, Yang RF, Bi YJ. Short-term high-dose gavage of hydroxychloroquine changes gut microbiota but not the intestinal integrity and immunological responses in mice. Life Sci. 2021;264:118450. doi:.

    Not in our library10.1016/j.lfs.2020.118450

  55. 55.

    Kong A, Zhang C, Cao Y, Cao Q, Liu F, Yang Y, Tong Z, Rehman MU, Wang X, Huang S. The fungicide thiram perturbs gut microbiota community and causes lipid metabolism disorder in chickens. Ecotoxicology and Environmental Safety. 2020;206:111400. doi:.

    Not in our library10.1080/15538362.2017.1285264

  56. 56.

    Zhou J, Shu R, Yu C, Xiong Z, Xiao Q, Li Z, Xie X, Fu Z. Exposure to low concentration of trifluoromethanesulfonic acid induces the disorders of liver lipid metabolism and gut microbiota in mice. Chemosphere. 2020;258:127255. doi:.

    Not in our library10.1016/j.chemosphere.2020.127255

  57. 57.

    Wu S, Luo T, Wang S, Zhou J, Ni Y, Fu Z, Jin Y. Chronic exposure to fungicide propamocarb induces bile acid metabolic disorder and increases trimethylamine in C57BL/6J mice. Sci Total Environ. 2018;642:341–348. doi:.

    Not in our library10.1016/j.scitotenv.2018.06.084

  58. 58.

    Liu J, Huang S, Li G, Zhao J, Lu W, Zhang Z. High housing density increases stress hormone- or disease-associated fecal microbiota in male Brandt’s voles (Lasiopodomys brandtii).. Hormones and Behavior. 2020;126:104838. doi:.

    Not in our library10.1001/jama.2020.12839

  59. 59.

    Plissonneau C, Capel F, Chassaing B, Dupuit M, Maillard F, Wawrzyniak I, Combaret L, Dutheil F, Etienne M, Mairesse G, et al. High-intensity interval training and alpha-linolenic acid supplementation improve DHA conversion and increase the abundance of gut mucosa-associated oscillospira bacteria. Nutrients. 2021;13. doi:.

    Not in our library10.3390/nu13030788

  60. 60.

    Maillard F, Vazeille E, Sauvanet P, Sirvent P, Bonnet R, Combaret L, Chausse P, Chevarin C, Otero YF, Delcros G, et al. preventive effect of spontaneous physical activity on the gut-adipose tissue in a mouse model that mimics crohn’s disease susceptibility. Cells. 2019;8. doi:.

    Not in our library10.3390/cells8010033

  61. 61.

    Haro C, Montes-Borrego M, Rangel-Zuniga OA, Alcala-Diaz JF, Gomez-Delgado F, Perez-Martinez P, Delgado-Lista J, Quintana-Navarro GM, Tinahones FJ, et al. Two healthy diets modulate gut microbial community improving insulin sensitivity in a human obese population. J Clin Endocr Metab. 2016;101(1):233–242. doi:.

    Not in our library10.1210/jc.2015-3351

  62. 62.

    Choo JM, Tran CD, Luscombe-Marsh ND, Stonehouse W, Bowen J, Johnson N, Thompson CH, Watson EJ, Brinkworth GD, Rogers GB. Almond consumption affects fecal microbiota composition, stool pH, and stool moisture in overweight and obese adults with elevated fasting blood glucose: a randomized controlled trial. Nutr Res. 2021;85:47–59. doi:.

    Not in our library10.1016/j.nutres.2020.11.005

  63. 63.

    Schots PC, Jansen KM, Mrazek J, Pedersen AM, Olsen RL, Larsen TS. Obesity-induced alterations in the gut microbiome in female mice fed a high-fat diet are antagonized by dietary supplementation with a novel, wax ester–rich, marine oil. Nutrition Research. 2020;83:94–107. doi:.

    Not in our library10.1016/j.nutres.2020.09.002

  64. 64.

    He Y, Yin J, Lei J, Liu F, Zheng H, Wang S, Wu S, Sheng H, McGovern E, Zhou H. Fasting challenges human gut microbiome resilience and reduces Fusobacterium. Medicine in Microecology. 2019;1–2. doi:.

    Not in our library10.1016/j.medmic.2019.100003

  65. 65.

    Ahmad AA, Zhang JB, Liang Z, Yang C, Kalwar Q, Shah T, Du M, Muhammad I, Zheng J, Yan P, Ding X-Z, et al. Dynamics of rumen bacterial composition of yak (Bos grunniens) in response to dietary supplements during the cold season. PeerJ. 2021;9:e11520–e. doi:.

    Not in our library10.7717/peerj.11520

  66. 66.
  67. 67.

    Mackie RI, Aminov RI, Hu W, Klieve AV, Ouwerkerk D, Sundset MA, Kamagata Y. Ecology of uncultivated oscillospira species in the rumen of cattle, sheep, and reindeer as assessed by microscopy and molecular approaches.. Applied and Environmental Microbiology. 2003;69(11):6808–6815. doi:.

    Not in our library10.1128/aem.69.11.6808-6815.2003

  68. 68.

    Ma Y, Ma S, Chang L, Wang H, Ga Q, Ma L,Bai Z, Shen Y, Ge RL. Gut microbiota adaptation to high altitude in indigenous animals. Biochem Biophys Res Commun. 2019;516(1):120–126. doi:.

    Not in our library10.1016/j.bbrc.2019.05.085

  69. 69.

    Yan J, Zhou B, Xi Y, Huan H, Li M, Yu J, Zhu H, Dai Z, Ying S, Zhou W, et al. Fermented feed regulates growth performance and the cecal microbiota community in geese. Poult Sci. 2019;98(10):4673–4684. doi:.

    Not in our library10.3382/ps/pez169

  70. 70.

    Shi D, Bai L, Qu Q, Zhou S, Yang M, Guo S, Li Q, Liu C. Impact of gut microbiota structure in heat-stressed broilers. Poult Sci. 2019;98(6):2405–2413. doi:.

    Not in our library10.3382/ps/pez026

  71. 71.

    Gallucci A, Patterson KC, Weit AR, Van Der Pol WJ, Dubois LG, Percy AK, Morrow CD, Campbell SL, Olsen ML. Microbial community changes in a female rat model of Rett syndrome. Prog Neuropsychopharmacol Biol Psychiatry. 2021;109:110259. doi:.

    Not in our library10.1016/j.pnpbp.2021.110259

  72. 72.
  73. 73.

    Maron CF, Kohl KD, Chirife A, Di Martino M, Fons MP, Navarro MA, Beingesser J, McAloose D, Uzal FA, Dearing MD, et al. Symbiotic microbes and potential pathogens in the intestine of dead southern right whale (Eubalaena australis) calves. Anaerobe. 2019;57:107–114. doi:.

    Not in our library10.1016/j.anaerobe.2019.04.003

  74. 74.

    Xi Y, Shuling N, Kunyuan T, Qiuyang Z, Hewen D, ChenCheng G, Tianhe Y, Liancheng L, Xin F. Characteristics of the intestinal flora of specific pathogen free chickens with age. Microbial Pathogenesis. 2019;132:325–334. doi:.

    Not in our library10.1016/j.micpath.2019.05.014

  75. 75.

    Li Y, Chen T, Li Y, Tang Y, Huang Z. Gut microbiota are associated with sex and age of host: evidence from semi-provisioned rhesus macaques in southwest Guangxi, China. Ecol Evol. 2021;11(12):8096–8122. doi:.

    Not in our library10.1002/ece3.7643

  76. 76.

    Liu YL, Yan T, Li XY, Duan YL, Yang X, Yang XJ. Effects of Bacillus subtilis and antibiotic growth promoters on the growth performance, intestinal function and gut microbiota of pullets from 0 to 6 weeks. Animal. 2020;1–10. doi:.

    Not in our library10.1017/s1751731120000191

  77. 77.

    Chen D, Jin D, Huang S, Wu J, Xu M, Liu T, Dong W, Liu X, Wang S, Zhong W, et al. Clostridium butyricum, a butyrate-producing probiotic, inhibits intestinal tumor development through modulating Wnt signaling and gut microbiota. Cancer Lett. 2020;469:456–467. doi:.

    Not in our library10.1016/j.canlet.2019.11.019

  78. 78.
  79. 79.

    Craft KM, Townsend SD. The human milk glycome as a defense against infectious diseases: rationale, challenges, and opportunities. ACS Infectious Diseases. 2018;4(2):77–83. doi:.

    Not in our library10.1021/acsinfecdis.7b00209

  80. 80.

    Lockyer S, Nugent AP. Health effects of resistant starch. Nutr Bull. 2017;42(1):10–41. doi:.

    Not in our library10.1111/nbu.12244

  81. 81.

    Jin Y, Wu S, Zeng Z, Fu Z. Effects of environmental pollutants on gut microbiota. Environ Pollut. 2017;222:1–9. doi:.

    Not in our library10.1016/j.envpol.2016.11.045

  82. 82.
  83. 83.

    Duan H, Yu L, Tian F, Zhai Q, Fan L, Chen W. Gut microbiota: a target for heavy metal toxicity and a probiotic protective strategy. Sci Total Environ. 2020;742. doi:.

    Not in our library10.1016/j.scitotenv.2020.140429

  84. 84.

    Duncan SH, Barcenilla A, Stewart CS, Pryde SE, Flint HJ. Acetate utilization and butyryl coenzyme A (CoA): acetate-CoA transferase in butyrate-producing bacteria from the human large intestine. Appl Environ Microb. 2002;68(10):E607–E615. doi:.

    Not in our library10.1128/aem.68.10.5186-5190.2002

  85. 85.

    Scott KP, Martin JC, Campbell G, Mayer C-D, Flint HJ. Whole-genome transcription profiling reveals genes up-regulated by growth on fucose in the human gut bacterium “roseburia inulinivorans”. J Bacteriol. 2006;188(12):540–542. doi:.

    Not in our library10.1128/jb.00137-06

  86. 86.

    Piekarska J, Mista D, Houszka M, Kroliczewska B, Zawadzki W, Gorczykowski M. Trichinella spiralis: the influence of short chain fatty acids on the proliferation of lymphocytes, the goblet cell count and apoptosis in the mouse intestine. Exp Parasitol. 2011;128:419–426. doi:.

    Not in our library10.1016/j.exppara.2011.05.019

  87. 87.

    Chen R, Wu P, Cai Z, Fang Y, Zhou H, Lasanajak Y, Tang L, Ye L, Hou C, Zhao J. Puerariae Lobatae Radix with chuanxiong Rhizoma for treatment of cerebral ischemic stroke by remodeling gut microbiota to regulate the brain-gut barriers. J Nutr Biochem. 2019;65:101–114. doi:.

    Not in our library10.1016/j.jnutbio.2018.12.004

  88. 88.

    Zhai Q, Cen S, Jiang J, Zhao J, Zhang H, Chen W. Disturbance of trace element and gut microbiota profiles as indicators of autism spectrum disorder: a pilot study of Chinese children. Environ Res. 2019;171:5186–5189. doi:.

    Not in our library10.1016/j.envres.2019.01.060

  89. 89.

    Anhe FF, Roy D, Pilon G, Dudonne S, Matamoros S, Varin TV, Garofalo C, Moine Q, Desjardins Y, Levy E, et al. A polyphenol-rich cranberry extract protects from diet-induced obesity, insulin resistance and intestinal inflammation in association with increased Akkermansia spp population in the gut microbiota of mice. Gut. 2015;64:872–883. doi:.

    Not in our library10.1136/gutjnl-2014-307142

  90. 90.

    Khare P, Maurya R, Bhatia R, Mangal P, Singh J, Podili K, Bishnoi M, Kondepudi KK. Polyphenol rich extracts of finger millet and kodo millet ameliorate high fat diet-induced metabolic alterations. Food Funct. 2020;11(11):9833–9847. doi:.

    Not in our library10.1039/d0fo01643h

  91. 91.

    Shi J, Shan S, Li H, Song G, Li Z. Anti-inflammatory effects of millet bran derived-bound polyphenols in LPS-induced HT-29 cell via ROS/miR-149/Akt/NF-kappa B signaling pathway. Oncotarget. 2017;8(43):193–204. doi:.

    Not in our library10.18632/oncotarget.20216

  92. 92.

    Pradeep PM, Sreerama YN. Phenolic antioxidants of foxtail and little millet cultivars and their inhibitory effects on alpha-amylase and alpha-glucosidase activities. Food Chem. 2018;247:46–55. doi:.

    Not in our library10.1016/j.foodchem.2017.11.103

  93. 93.

    Zhang L, Zhang Z-Z, Zhou Y-B, Ling T-J, Wan X-C. Chinese dark teas: postfermentation, chemistry and biological activities. Food Res Int. 2013;53(2):74582–74587. doi:.

    Not in our library10.1016/j.foodres.2013.01.016

  94. 94.

    Zheng W-J, Wan X-C, Bao G-H. Brick dark tea: a review of the manufacture, chemical constituents and bioconversion of the major chemical components during fermentation. Phytochem Rev. 2015;14(3):499–523. doi:.

    Not in our library10.1007/s11101-015-9402-8

  95. 95.

    Vianna LC, Fernandes IA, Barbosa TC, Teixeira AL, Nobrega ACL. Capsaicin-based analgesic balm attenuates the skeletal muscle metaboreflex in healthy humans. J Appl Physiol. 2018;125(2):362–368. doi:.

    Not in our library10.1152/japplphysiol.00038.2018

  96. 96.

    Sanchez BG, Bort A, Mateos-Gomez PA, Rodriguez-Henche N, Diaz-Laviada I. Combination of the natural product capsaicin and docetaxel synergistically kills human prostate cancer cells through the metabolic regulator AMP-activated kinase. Cancer Cell Int. 2019;19. doi:.

    Not in our library10.1186/s12935-019-0769-2

  97. 97.

    Segawa Y, Hashimoto H, Maruyama S, Shintani M, Ohno H, Nakai Y, Osera T, Kurihara N. Dietary capsaicin-mediated attenuation of hypertension in a rat model of renovascular hypertension. Clin Exp Hypertens. 2020;42(4):352–359. doi:.

    Not in our library10.1080/10641963.2019.1665676

  98. 98.

    Chen Y-Z, Liu G-Z, Shen Y, Chen B, Zeng J-G. Analysis of alkaloids in macleaya cordata (Willd.) R. Br. using high-performance liquid chromatography with diode array detection and electrospray ionization mass spectrometry. J Chromatogr A. 2009;1216(11):2104–2110. doi:.

    Not in our library10.1016/j.chroma.2008.08.066

  99. 99.

    Kantas D, Papatsiros VG, Tassis PD, Athanasiou LV, Tzika ED. The effect of a natural feed additive (Macleaya cordata), containing sanguinarine, on the performance and health status of weaning pigs. Anim Sci J. 2015;86(1):92–98. doi:.

    Not in our library10.1111/asj.12240

  100. 100.

    Ni H, Martinez Y, Guan G, Rodriguez R, Mas D, Peng H, Valdivie Navarro M, Liu G. Analysis of the impact of isoquinoline alkaloids, derived from macleaya cordata extract, on the development and innate immune response in swine and poultry. Biomed Res Int. 2016;2016. doi:.

    Not in our library10.1155/2016/1352146

  101. 101.

    Ross KA, Ehret D, Godfrey D, Fukumoto L, Diarra M. Characterization of pilot scale processed canadian organic cranberry (vaccinium macrocarpon) and blueberry (vaccinium angustifolium) juice pressing residues and phenolic-enriched extractives. Int J Fruit Sci. 2017;17(2):202–232. doi:.

    Not in our library10.1080/15538362.2017.1285264

  102. 102.

    Schroeder FA, Lin CL, Crusio WE, Akbarian S. Antidepressant-like effects of the histone deacetylase inhibitor, sodium butyrate, in the mouse. Biol Psychiat. 2007;62(1):55–64. doi:.

    Not in our library10.1016/j.biopsych.2006.06.036

  103. 103.

    Cox MA, Jackson J, Stanton M, Rojas-Triana A, Bober L, Laverty M, Yang X, Zhu F, Liu J, Wang S, et al. Short-chain fatty acids act as antiinflammatory mediators by regulating prostaglandin E-2 and cytokines. World J Gastroentero. 2009;15(44):5549–5557. doi:.

    Not in our library10.3748/wjg.15.5549

  104. 104.

    Stefka AT, Feehley T, Tripathi P, Qiu J, McCoy K, Mazmanian SK, Tjota MY, Seo G-Y, Cao S, Theriault BR, et al. Commensal bacteria protect against food allergen sensitization. Proceedings of the National Academy of Sciences. 2014;111(36):13145–13150. doi:.

    Not in our library10.1073/pnas.1412008111

  105. 105.

    Du Z, Gao X, Yin J. Gut microbiome alterations in patients with wheat-dependent exercise-induced anaphylaxis. Int Immunopharmacol. 2020;84:106557. doi:.

    Not in our library10.1016/j.intimp.2020.106557

  106. 106.

    Feng WW, Liu J, Ao H, Yue SJ, Peng C. Targeting gut microbiota for precision medicine: focusing on the efficacy and toxicity of drugs. Theranostics. 2020;10(24):11278–11301. doi:.

    Not in our library10.7150/thno.47289

  107. 107.

    Noh K, Kang YR, Nepal MR, Shakya R, Kang MJ, Kang W,Lee S, Jeong HG, Jeong TC. Impact of gut microbiota on drug metabolism: an update for safe and effective use of drugs. Arch Pharm Res. 2017;40(12):1345–1355. doi:.

    Not in our library10.1007/s12272-017-0986-y

  108. 108.

    Wiersinga WJ, Rhodes A, Cheng AC, Peacock SJ, Prescott HC. Pathophysiology, transmission,diagnosis, and treatment of coronavirus disease 2019 (COVID-19) A review. JAMA-J Am Med Assoc. 2020;324(8):114260–114293. doi:.

    Not in our library10.1001/jama.2020.12839

  109. 109.

    Belkaid Y, Hand TW. Role of the Microbiota in Immunity and Inflammation. Cell. 2014;157(1):121–141. doi:.

    Not in our library10.1016/j.cell.2014.03.011

  110. 110.

    David LA, Maurice CF, Carmody RN, Gootenberg DB, Button JE, Wolfe BE, Ling AV, Devlin AS, Varma Y, Fischbach MA, et al. Diet rapidly and reproducibly alters the human gut microbiome. Nature. 2014;505(7484):559-+. doi:.

    Not in our library10.1038/nature12820

  111. 111.

    Motiani KK, Collado MC, Eskelinen J-J, Virtanen KA, Loyttyniemi E, Salminen S, Nuutila P, Kalliokoski KK, Hannukainen JC. Exercise training modulates gut microbiota profile and improves endotoxemia. Med Sci Sport Exer. 2020;52(1):94–104. doi:.

    Not in our library10.1249/mss.0000000000002112

  112. 112.

    Tims S, Derom C, Jonkers DM, Vlietinck R, Saris WH, Kleerebezem M, de Vos WM, Zoetendal EG. Microbiota conservation and BMI signatures in adult monozygotic twins. ISME J. 2013;7(4):707–717. doi:.

    Not in our library10.1038/ismej.2012.146

  113. 113.
  114. 114.
  115. 115.
  116. 116.

    Allen JM, Miller MEB, Pence BD, Whitlock K, Nehra V, Gaskins HR, White BA, Fryer JD, Woods JA Voluntary and forced exercise differentially alters the gut microbiome in C57BL/6J mice. J Appl Physiol. 2015;118(8):1059–1066. doi:.

    Not in our library10.1152/japplphysiol.01077.2014

  117. 117.

    Mueller S, Saunier K, Hanisch C, Norin E, Alm L, Midtvedt T, Cresci A, Silvi S, Orpianesi C, Verdenelli MC, et al. Differences in fecal microbiota in different European study populations in relation to age, gender, and country: a cross-sectional study. Appl Environ Microbiol. 2006;72(2):1027–1033. doi:.

    Not in our library10.1128/aem.72.2.1027-1033.2006

  118. 118.

    Wei B, Wang S, Wang Y, Ke S, Jin W, Chen J, Zhang H, Sun J, Henning SM, Wang J, et al. Gut microbiota-mediated xanthine metabolism is associated with resistance to high-fat diet-induced obesity. The Journal of Nutritional Biochemistry. 2021;88:108533. doi:.

    Not in our library10.1016/j.jnutbio.2020.108533

  119. 119.

    Xu N, Bai X, Cao X, Yue W, Jiang W, Yu Z. Changes in intestinal microbiota and correlation with TLRs in ulcerative colitis in the coastal area of northern China. Microb Pathog. 2021;150:104707. doi:.

    Not in our library10.1016/j.micpath.2020.104707

  120. 120.

    Lima S, Longman RS. A diamond in the rough: iga-seq signatures stratify new onset IBD. Cell Host Microbe. 2021;29(1):10–12. doi:.

    Not in our library10.1016/j.chom.2020.12.014

  121. 121.

    Liu GM, Liang L, Yu GY, Li QH. Pumpkin polysaccharide modifies the gut microbiota during alleviation of type 2 diabetes in rats. Int J Biol Macromol. 2018;115:711–717. doi:.

    Not in our library10.1016/j.ijbiomac.2018.04.127

  122. 122.

    Hua YL, Jia YQ, Zhang XS, Yuan ZW, Ji P, Hu JJ, Wei YM. Baitouweng Tang ameliorates DSS-induced ulcerative colitis through the regulation of the gut microbiota and bile acids via pathways involving FXR and TGR5. Biomed Pharmacother. 2021;137:111320. doi:.

    Not in our library10.1016/j.biopha.2021.111320

  123. 123.
  124. 124.

    Del Chierico F, Nobili V, Vernocchi P, Russo A, De Stefanis C, Gnani D, Furlanello C, Alessandro ZA, Paci P, Capuani G. Gut microbiota profiling of pediatric nonalcoholic fatty liver disease and obese patients unveiled by an integrated meta-omics-based approach. Hepatology. 2017;65(2):451–464. doi:.

    Not in our library10.1002/hep.28572

  125. 125.

    Zhang J, Luo D, Lin Z, Zhou W, Rao J, Li Y, Wu J, Peng H, Lou T. Dysbiosis of gut microbiota in adult idiopathic membranous nephropathy with nephrotic syndrome. Microbial Pathogenesis. 2020;147:104359. doi:.

    Not in our library10.1016/j.micpath.2020.104359

  126. 126.

    Shintouo CM, Mets T, Beckwee D, Bautmans I, Ghogomu SM, Souopgui J, Leemans L, Meriki HD, Njemini R. Is inflammageing influenced by the microbiota in the aged gut? A systematic review. Exp Gerontol. 2020;141:111079. doi:.

    Not in our library10.1016/j.exger.2020.111079

  127. 127.

    Zhang F, Yue L, Fang X, Wang G, Li C, Sun X, Jia X, Yang J, Song J, Zhang Y, et al. Altered gut microbiota in Parkinson’s disease patients/healthy spouses and its association with clinical features. Parkinsonism Relat Disord. 2020;81:84–88. doi:.

    Not in our library10.1016/j.parkreldis.2020.10.034

  128. 128.

    Vascellari S, Melis M, Cossu G, Melis M, Serra A, Palmas V, Perra D, Oppo V, Fiorini M, Cusano R, et al. Genetic variants of TAS2R38 bitter taste receptor associate with distinct gut microbiota traits in Parkinson’s disease: a pilot study.. International Journal of Biological Macromolecules. 2020;165:665–674. doi:.

    Not in our library10.1016/j.ijbiomac.2020.09.056

  129. 129.

    Zhai Q, Cen S, Jiang J, Zhao J, Zhang H, Chen W. Disturbance of trace element and gut microbiota profiles as indicators of autism spectrum disorder: a pilot study of Chinese children. Environ Res. 2019;171:501–509. doi:.

    Not in our library10.1016/j.envres.2019.01.060

  130. 130.

    Chen X, Zhang D, Sun H, Jiang F, Shen Y, Wei P, Shen X. Characterization of the gut microbiota in Chinese children with overweight and obesity using 16S rRNA gene sequencing. Peerj. 2021;9. doi:.

    Not in our library10.7717/peerj.11439

  131. 131.

    Cao C, Liu M, Qu S, Huang R, Qi M, Zhu Z, Zheng J, Chen Z, Wang Z, Han Z, et al. Chinese medicine formula kai-xin-san ameliorates depression-like behaviours in chronic unpredictable mild stressed mice by regulating gut microbiota-inflammation-stress system. Journal of Ethnopharmacology. 2020;261:113055. doi:.

    Not in our library10.1016/j.jep.2020.113055

  132. 132.

    Verdam FJ, Fuentes S, de Jonge C, Zoetendal EG, Erbil R, Greve JW, Buurman WA, de Vos WM, Rensen SS. Human intestinal microbiota composition is associated with local and systemic inflammation in obesity. Obesity (Silver Spring). 2013;21(12):E607–15. doi:.

    Not in our library10.1002/oby.20466

  133. 133.

    Keren N, Konikoff FM, Paitan Y, Gabay G, Reshef L, Naftali T, Gophna U. Interactions between the intestinal microbiota and bile acids in gallstones patients. Environ Microbiol Rep. 2015;7(6):874–880. doi:.

    Not in our library10.1111/1758-2229.12319

  134. 134.

    Altimiras F, Garcia JA, Palacios-Garcia I, Hurley MJ, Deacon R, Gonzalez B, Cogram P. Altered gut microbiota in a fragile X syndrome mouse model. Front Neurosci. 2021;15. doi:.

    Not in our library10.3389/fnins.2021.653120

  135. 135.

    Parthasarathy G, Chen J, Chen X, Chia N, O’Connor HM, Wolf PG, Gaskins HR, Bharucha AE. Relationship between microbiota of the colonic mucosa vs feces and symptoms, colonic transit, and methane production in female patients with chronic constipation. Gastroenterology. 2016;150(2):367-+. doi:.

    Not in our library10.1053/j.gastro.2015.10.005

  136. 136.
  137. 137.

    Stanislawski MA, Lozupone CA, Wagner BD, Eggesbo M, Sontag MK, Nusbacher NM, Martinez M, Dabelea D. Gut microbiota in adolescents and the association with fatty liver: the EPOCH study.. Pediatric Research. 2018;84(2):219–227. doi:.

    Not in our library10.1038/pr.2018.32

  138. 138.

    Wang L, Wan YY. The role of gut microbiota in liver disease development and treatment. Liver Res. 2019;3(1):3–18. doi:.

    Not in our library10.1016/j.livres.2019.02.001

  139. 139.

    Zhou H, Liu J, Shen J, Fang W, Zhang L. Gut microbiota and lung cancer: a mendelian randomization study. JTO Clinical and Research Reports. 2020;1. doi:.

    Not in our library10.1016/j.jtocrr.2020.100042

  140. 140.

    Tigchelaar EF, Bonder MJ, Jankipersadsing A, Fu J, Wijmenga C, Zhernakova A. Gut microbiota composition associated with stool consistency. Gut. 2016;65(3):540–542. doi:.

    Not in our library10.1136/gutjnl-2015-310328

  141. 141.

    Hofmann AF. Increased deoxycholic acid absorption and gall stones in acromegalic patients treated with octreotide: more evidence for a connection between slow transit constipation and gall stones. Gut. 2005;54(5):575–578. doi:.

    Not in our library10.1136/gut.2004.048074

  142. 142.
  143. 143.

    De Martinis M, Di Benedetto MC, Mengoli LP, Ginaldi L. Senile osteoporosis: is it an immune-mediated disease? Inflamm Res. 2006;55(10):399–404. doi:.

    Not in our library10.1007/s00011-006-6034-x

  144. 144.
  145. 145.

    Ng M, Fleming T, Robinson M, Thomson B, Graetz N, Margono C, Mullany EC, Biryukov S, Abbafati C, Abera SF, et al. Global, regional, and national prevalence of overweight and obesity in children and adults during 1980–2013: a systematic analysis for the global burden of disease study 2013. The Lancet. 2014;384(9945):766–781. doi:.

    Not in our library10.1016/s0140-6736(14)60460-8

  146. 146.

    Hagerman RJ, Berry-Kravis E, Kaufmann WE, Ono MY, Tartaglia N, Lachiewicz A, Kronk R, Delahunty C, Hessl D, Visootsak J, et al. Advances in the treatment of fragile X syndrome. Pediatrics. 2009;123(1):378–390. doi:.

    Not in our library10.1542/peds.2008-0317

  147. 147.

    Banerjee A, Ifrim MF, Valdez AN, Raj N, Bassell GJ. Aberrant RNA translation in fragile X syndrome: from FMRP mechanisms to emerging therapeutic strategies. Brain Res. 2018;1693:24–36. doi:.

    Not in our library10.1016/j.brainres.2018.04.008

  148. 148.

    Goodrich JK, Waters JL, Poole AC, Sutter JL, Koren O, Blekhman R, Beaumont M, Van Treuren W, Knight R, Bell JT, et al. Human genetics shape the gut microbiome. Cell. 2014;159(4):789–799. doi:.

    Not in our library10.1016/j.cell.2014.09.053

  149. 149.

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