No retraction, correction or concern found when last checked on Oct 25, 2026.
Deep learning for photoacoustic tomography from sparse data
Stephan Antholzer, Markus Haltmeier, Johannes Schwab
Inverse Problems in Science and Engineering · 2018 · CC BY
doi:10.1080/17415977.2018.1518444
Abstract
The development of fast and accurate image reconstruction algorithms is a central aspect of computed tomography. In this paper, we investigate this issue for the sparse data problem in photoacoustic tomography (PAT). We develop a direct and highly efficient reconstruction algorithm based on deep learning. In our approach, image reconstruction is performed with a deep convolutional neural network (CNN), whose weights are adjusted prior to the actual image reconstruction based on a set of training data. The proposed reconstruction approach can be interpreted as a network that uses the PAT filtered backprojection algorithm for the first layer, followed by the U-net architecture for the remaining layers. Actual image reconstruction with deep learning consists in one evaluation of the trained CNN, which does not require time-consuming solution of the forward and adjoint problems. At the same time, our numerical results demonstrate that the proposed deep learning approach reconstructs images with a quality comparable to state of the art iterative approaches for PAT from sparse data.
Full text
Its licence does not allow us to show the full text. Read it at PubMed Central:
Read at PubMed CentralReferences 80
- 1.
Goodfellow I, Bengio Y, Courville A. Deep learning. Cambridge (MA): MIT Press; 2016.
Not in our library
- 2.
- 3.
Bahdanau D, Cho K, Bengio Y. Neural machine translation by jointly learning to align and translate. arXiv:1409.0473; 2014.
Not in our library
- 4.
Collobert R, Weston J, Bottou L, et al Natural language processing (almost) from scratch. J Mach Learn Res. 2011;12:2493–2537.
Not in our library
- 5.
Greenspan H, van Ginneken B, Summers RM. Guest editorial deep learning in medical imaging: overview and future promise of an exciting new technique. IEEE Trans Med Imaging. 2016;35(5):1153–1159
Not in our library10.1109/tmi.2016.2553401
- 6.
Ioffe S, Szegedy C. Batch normalization: accelerating deep network training by reducing internal covariate shift. arXiv:1502.03167; 2015.
Not in our library
- 7.
Krizhevsky A, Sutskever I, Hinton GE. Imagenet classification with deep convolutional neural networks. Adv Neural Inf Process Syst. 2012;25:1097–1105.
Not in our library
- 8.
Litjens G, Kooi T, Ehteshami Bejnordi B, et al A survey on deep learning in medical image analysis. Med Image Anal 2017;41:60–88.
Not in our library10.1016/j.media.2017.07.005
- 9.
Ma J, Sheridan RP, Liaw A, et al Deep neural nets as a method for quantitative structure–activity relationships. J Chem Inf Model. 2015;55(2):263–274
Not in our library10.1021/ci500747n
- 10.
Wu R, Yan S, Shan Y, et al Deep image: scaling up image recognition. arXiv:1501.02876; 2015.
Not in our library
- 11.
Chen H, Zhang Y, Zhang W, et al Low-dose CT via convolutional neural network. Biomed Opt Express. 2017;8(2):679–694
Not in our library10.1364/boe.8.000679
- 12.
Han Y, Yoo JJ, Ye JC. Deep residual learning for compressed sensing CT reconstruction via persistent homology analysis. Available from: arXiv:1611.06391; 2016.
Not in our library
- 13.
Jin KH, McCann MT, Froustey E, et al Deep convolutional neural network for inverse problems in imaging. arXiv:1611.03679; 2016.
Not in our library10.1109/tip.2017.2713099
- 14.
Wang G. A perspective on deep imaging. IEEE Access. 2016;4:8914–8924
Not in our library10.1109/access.2016.2624938
- 15.
Wang S, Su Z, Ying L, et al Accelerating magnetic resonance imaging via deep learning. IEEE 13th international symposium on biomedical Imaging (ISBI); 2016. p. 514–517.
Not in our library10.1109/isbi.2016.7493320
- 16.
Würfl T, Ghesu FC, Christlein V. Deep learning computed tomography. International conference on medical image computing and computer-assisted intervention; Springer: 2016. p. 432–440.
Not in our library
- 17.
Zhang H, Li L, Qiao K, et al Image prediction for limited-angle tomography via deep learning with convolutional neural network. arXiv:1607.08707; 2016.
Not in our library
- 18.
Beard P. Biomedical photoacoustic imaging. Interface Focus. 2011;1(4):602–631
Not in our library10.1098/rsfs.2011.0028
- 19.
Kruger RA, Lui P, Fang YR, et al Photoacoustic ultrasound (paus) – reconstruction tomography. Med Phys. 1995;22(10):1605–1609
Not in our library10.1118/1.597429
- 20.
Paltauf G, Nuster R, Haltmeier M, et al Photoacoustic tomography using a Mach-Zehnder interferometer as an acoustic line detector. Appl Opt. 2007;46(16):3352–3358
Not in our library10.1364/ao.46.003352
- 21.
Wang LV. Multiscale photoacoustic microscopy and computed tomography. Nat Photon. 2009;3(9):503–509
Not in our library10.1038/nphoton.2009.157
- 22.
Haltmeier M. Sampling conditions for the circular radon transform. IEEE Trans Image Process. 2016;25(6):2910–2919
Not in our library10.1109/tip.2016.2551364
- 23.
Natterer F. The mathematics of computerized tomographytte, volume 32 of Classics in applied mathematics. Philadelphia: SIAM; 2001.
Not in our library
- 24.
Arridge S, Beard P, Betcke M, et al Accelerated high-resolution photoacoustic tomography via compressed sensing. Phys Med Biol. 2016;61(24):8908
Not in our library10.1088/1361-6560/61/24/8908
- 25.
Bauer-Marschallinger J, Felbermayer K, Bouchal K-D, et al Photoacoustic projection imaging using a 64-channel fiber optic detector array. Proc. San Francisco (CA): SPIE; 2015. p. 9323.
Not in our library
- 26.
Gratt S, Nuster R, Wurzinger G, et al 64-line-sensor array: fast imaging system for photoacoustic tomography. Proc SPIE. 2014;8943:894365.
Not in our library
- 27.
Guo Z, Li C, Song L, et al Compressed sensing in photoacoustic tomography in vivo. J Biomed Opt. 2010;15(2):021311–021311
Not in our library10.1117/1.3381187
- 28.
Rosenthal A, Ntziachristos V, Razansky D. Acoustic inversion in optoacoustic tomography: a review. Curr Med Imaging Rev. 2013;9(4):318–336
Not in our library10.2174/15734056113096660006
- 29.
Sandbichler M, Krahmer F, Berer T, et al A novel compressed sensing scheme for photoacoustic tomography. SIAM J Appl Math. 2015;75(6):2475–2494
Not in our library10.1137/141001408
- 30.
Arridge SR, Betcke MM, Cox BT, et al On the adjoint operator in photoacoustic tomography. Inverse Problems. 2016;32(11):115012 (19pp)
Not in our library10.1088/0266-5611/32/11/115012
- 31.
Belhachmi Z, Glatz T, Scherzer O. A direct method for photoacoustic tomography with inhomogeneous sound speed. Inverse Problems. 2016;32(4):045005
Not in our library10.1088/0266-5611/32/4/045005
- 32.
Haltmeier M, Nguyen LV. Analysis of iterative methods in photoacoustic tomography with variable sound speed. SIAM J Imaging Sci. 2017;10(2):751–781
Not in our library10.1137/16m1104822
- 33.
Huang C, Wang K, Nie L, et al Full-wave iterative image reconstruction in photoacoustic tomography with acoustically inhomogeneous media. IEEE Trans Med Imaging. 2013;32(6):1097–1110
Not in our library10.1109/tmi.2013.2254496
- 34.
Javaherian A, Holman S. A multi-grid iterative method for photoacoustic tomography. IEEE Trans Med Imaging. 2017;36(3):696–706
Not in our library10.1109/tmi.2016.2625272
- 35.
Schwab J, Pereverzyev Jr S, Haltmeier M. A Galerkin least squares approach for photoacoustic tomography. arXiv:1612.08094; 2016.
Not in our library
- 36.
Wang K, Su R, Oraevsky AA, et al Investigation of iterative image reconstruction in three-dimensional optoacoustic tomography. Phys Med Biol. 2012;57(17):5399
Not in our library10.1088/0031-9155/57/17/5399
- 37.
Acar R, Vogel CR. Analysis of bounded variation penalty methods for ill-posed problems. Inverse Problems. 1994;10(6):1217–1229
Not in our library10.1088/0266-5611/10/6/003
- 38.
Daubechies I, Defrise M, De Mol C. An iterative thresholding algorithm for linear inverse problems with a sparsity constraint. Comm Pure Appl Math. 2004;57(11):1413–1457
Not in our library10.1002/cpa.20042
- 39.
Frikel J, Haltmeier M. Efficient regularization with wavelet sparsity constraints in photoacoustic tomography. Inverse Prob. 2018; 34:024006(28pp).
Not in our library
- 40.
Grasmair M, Haltmeier M, Scherzer O. Sparsity in inverse geophysical problems. In Freeden W, Nashed MZ, Sonar T, editors. Handbook of geomathematics. Berlin, Heidelberg: Springer; 2010. p. 763–784.
Not in our library
Cited by papers we hold 5
- Fast iterative reconstruction for photoacoustic tomography using learned physical model: Theoretical validation · 2023Not checked
- Deep learning for biomedical photoacoustic imaging: A review · 2021No notice
- Review of cost reduction methods in photoacoustic computed tomography · 2019Not checked
- Model-Based Learning for Accelerated, Limited-View 3-D Photoacoustic Tomography · 2018No notice
- Phase recovery and holographic image reconstruction using deep learning in neural networks · 2017No notice
Reads
Read by people on this page
None yet.
Checked or read by AI through naulon
None yet.
A person counts once a day per paper. We keep no cookie and no address: a reader is a hash that changes every day. Any month under five reads shows no number.
Are you an author?
Is this your paper?
Claim it to add your note and be paid when agents cite it. Free.