Native protein sequences are close to optimal for their structures

• Protein sequence design with a learned potential · 2022

• Recent advances in de novo protein design: Principles, methods, and applications · 2021

• Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and Dynamics · 2016

• Staphylococcal Bap Proteins Build Amyloid Scaffold Biofilm Matrices in Response to Environmental Signals · 2016

• Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently · 2015

• RosettaScripts: A Scripting Language Interface to the Rosetta Macromolecular Modeling Suite · 2011

• Modeling Symmetric Macromolecular Structures in Rosetta3 · 2011

• Rosetta FlexPepDock ab-initio: Simultaneous Folding, Docking and Refinement of Peptides onto Their Receptors · 2011

• SnugDock: Paratope Structural Optimization during Antibody-Antigen Docking Compensates for Errors in Antibody Homology Models · 2010

• Emergence of Protein Fold Families through Rational Design · 2006

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