The use of gene clusters to infer functional coupling

Cited by papers we hold 24

• Unraveling the functional dark matter through global metagenomics · 2023
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• FlaGs and webFlaGs: discovering novel biology through the analysis of gene neighbourhood conservation · 2020
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• Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation · 2019
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• The chromosomal organization of horizontal gene transfer in bacteria · 2017
  Corrected
• Homoeologs: What Are They and How Do We Infer Them? · 2016
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• HGTector: an automated method facilitating genome-wide discovery of putative horizontal gene transfers · 2014
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• Protein-Protein Interaction Detection: Methods and Analysis · 2014
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• MacSyFinder: A Program to Mine Genomes for Molecular Systems with an Application to CRISPR-Cas Systems · 2014
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• Inferring Hierarchical Orthologous Groups from Orthologous Gene Pairs · 2013
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• The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) · 2013
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• SEED Servers: High-Performance Access to the SEED Genomes, Annotations, and Metabolic Models · 2012
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• Genomic and Proteomic Analyses of the Fungus Arthrobotrys oligospora Provide Insights into Nematode-Trap Formation · 2011
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• Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins · 2009
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• Methylobacterium Genome Sequences: A Reference Blueprint to Investigate Microbial Metabolism of C1 Compounds from Natural and Industrial Sources · 2009
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• Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods · 2009
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• A subset of the diverse COG0523 family of putative metal chaperones is linked to zinc homeostasis in all kingdoms of life · 2009
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• Annotation Error in Public Databases: Misannotation of Molecular Function in Enzyme Superfamilies · 2009
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• Comparative Analysis of Acinetobacters: Three Genomes for Three Lifestyles · 2008
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• Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners · 2007
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• An Improved, Bias-Reduced Probabilistic Functional Gene Network of Baker's Yeast, Saccharomyces cerevisiae · 2007
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and 4 more

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