Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms

Cited by papers we hold 63

• An ANI gap within bacterial species that advances the definitions of intra-species units · 2024
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• Next Generation and Other Sequencing Technologies in Diagnostic Microbiology and Infectious Diseases · 2022
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• Prokaryotic taxonomy and nomenclature in the age of big sequence data · 2021
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• Typing methods based on whole genome sequencing data · 2020
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• Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0 · 2020
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• Genomics in Bacterial Taxonomy: Impact on the Genus Pseudomonas · 2020
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• Comparative Analysis of the Two Acinetobacter baumannii Multilocus Sequence Typing (MLST) Schemes · 2019
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• The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity · 2019
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• Fast and flexible bacterial genomic epidemiology with PopPUNK · 2019
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• Urban metagenomics uncover antibiotic resistance reservoirs in coastal beach and sewage waters · 2019
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• Application of Machine Learning in Microbiology · 2019
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• chewBBACA: A complete suite for gene-by-gene schema creation and strain identification · 2018
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• Host-microbiome interactions and recent progress into understanding the biology of acne vulgaris · 2018
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• Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications · 2018
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• A genomic overview of the population structure of Salmonella · 2018
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• Comparative analysis of core genome MLST and SNP typing within a European Salmonella serovar Enteritidis outbreak · 2018
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• An Update on Candida tropicalis Based on Basic and Clinical Approaches · 2017
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• Development and evaluation of a core genome multilocus typing scheme for whole-genome sequence-based typing of Acinetobacter baumannii · 2017
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• Metagenomic Sequencing with Strain-Level Resolution Implicates Uropathogenic E. coli in Necrotizing Enterocolitis and Mortality in Preterm Infants · 2016
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• BPGA- an ultra-fast pan-genome analysis pipeline · 2016
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and 43 more

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