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E(3)-equivariant graph neural networks for data-efficient and accurate interatomic potentials
Simon Batzner, Albert Musaelian, Lixin Sun and 6 more
Nature Communications · 2022 · CC BY
doi:10.1038/s41467-022-29939-5
Abstract
This work presents Neural Equivariant Interatomic Potentials (NequIP), an E(3)-equivariant neural network approach for learning interatomic potentials from ab-initio calculations for molecular dynamics simulations. While most contemporary symmetry-aware models use invariant convolutions and only act on scalars, NequIP employs E(3)-equivariant convolutions for interactions of geometric tensors, resulting in a more information-rich and faithful representation of atomic environments. The method achieves state-of-the-art accuracy on a challenging and diverse set of molecules and materials while exhibiting remarkable data efficiency. NequIP outperforms existing models with up to three orders of magnitude fewer training data, challenging the widely held belief that deep neural networks require massive training sets. The high data efficiency of the method allows for the construction of accurate potentials using high-order quantum chemical level of theory as reference and enables high-fidelity molecular dynamics simulations over long time scales.
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Read at PubMed CentralReferences 62
- 1.
Richards WD, et al. Design and synthesis of the superionic conductor na 10 snp 2 s 12. Nat. Commun. 2016;7:1-8.
Not in our library10.1038/ncomms11009
- 2.
Boero M, Parrinello M, Terakura K. First principles molecular dynamics study of ziegler- natta heterogeneous catalysis. J. Am. Chem. Soc. 1998;120:2746-2752.
Not in our library10.1021/ja972367i
- 3.
Lindorff-Larsen K, Piana S, Dror RO, Shaw DE. How fast-folding proteins fold. Science. 2011;334:517-520.
Not in our library10.1126/science.1208351
- 4.
Behler J, Parrinello M. Generalized neural-network representation of high-dimensional potential-energy surfaces. Phys. Rev. Lett. 2007;98:146401.
Not in our library10.1103/physrevlett.98.146401
- 5.
Bartók AP, Payne MC, Kondor R, Csányi G. Gaussian approximation potentials: the accuracy of quantum mechanics, without the electrons. Phys. Rev. Lett. 2010;104:136403.
Not in our library10.1103/physrevlett.104.136403
- 6.
Shapeev AV. Moment tensor potentials: a class of systematically improvable interatomic potentials. Multiscale Model. Simul. 2016;14:1153-1173.
Not in our library10.1137/15m1054183
- 7.
Thompson AP, Swiler LP, Trott CR, Foiles SM, Tucker GJ. Spectral neighbor analysis method for automated generation of quantum-accurate interatomic potentials. J. Comput. Phys. 2015;285:316-330.
Not in our library10.1016/j.jcp.2014.12.018
- 8.
Vandermause J, et al. On-the-fly active learning of interpretable bayesian force fields for atomistic rare events. Npj Comput. Mater. 2020;6:1-11.
Not in our library10.1038/s41524-020-0283-z
- 9.
Schütt, K. et al. Schnet: A continuous-filter convolutional neural network for modeling quantum interactions. Adv. Neural Inf. Process. Syst.30, 991–1001 (2017).
Not in our library
- 10.
Unke OT, Meuwly M. Physnet: A neural network for predicting energies, forces, dipole moments, and partial charges. J. Chem. Theory Comput. 2019;15:3678-3693.
Not in our library10.1021/acs.jctc.9b00181
- 11.
Klicpera, J., Groß, J. & Günnemann, S. Directional message passing for molecular graphs. arXiv preprint arXiv:2003.03123 (2020).
Not in our library
- 12.
Mailoa JP, et al. A fast neural network approach for direct covariant forces prediction in complex multi-element extended systems. Nat. Mach. Intell. 2019;1:471-479.
Not in our library10.1038/s42256-019-0098-0
- 13.
Park, C. W. et al. Accurate and scalable multi-element graph neural network force field and molecular dynamics with direct force architecture. arXiv preprint arXiv:2007.14444 (2020).
Not in our library
- 14.
Artrith N, Kolpak AM. Understanding the composition and activity of electrocatalytic nanoalloys in aqueous solvents: A combination of dft and accurate neural network potentials. Nano Lett. 2014;14:2670-2676.
Not in our library10.1021/nl5005674
- 15.
Zhang L, Han J, Wang H, Car R, Weinan E. Deep potential molecular dynamics: a scalable model with the accuracy of quantum mechanics. Phys. Rev. Lett. 2018;120:143001.
Not in our library10.1103/physrevlett.120.143001
- 16.
Smith JS, Isayev O, Roitberg AE. Ani-1: an extensible neural network potential with dft accuracy at force field computational cost. Chem. Sci. 2017;8:3192-3203.
Not in our library10.1039/c6sc05720a
- 17.
Gilmer, J., Schoenholz, S. S., Riley, P. F., Vinyals, O. & Dahl, G. E. Neural message passing for quantum chemistry. arXiv preprint arXiv:1704.01212 (2017).
Not in our library
- 18.
Anderson, B., Hy, T. S. & Kondor, R. Cormorant: Covariant molecular neural networks. Adv. Neural Inf. Process. Syst. 14537–14546 (2019).
Not in our library
- 19.
Townshend, R. J., Townshend, B., Eismann, S. & Dror, R. O. Geometric prediction: Moving beyond scalars. arXiv preprint arXiv:2006.14163 (2020).
Not in our library
- 20.
Thomas, N. et al. Tensor field networks: Rotation-and translation-equivariant neural networks for 3d point clouds. arXiv preprint arXiv:1802.08219 (2018).
Not in our library
- 21.
- 22.
Schütt, K. T., Unke, O. T. & Gastegger, M. Equivariant message passing for the prediction of tensorial properties and molecular spectra. arXiv preprint arXiv:2102.03150 (2021).
Not in our library
- 23.
Haghighatlari, M. et al. Newtonnet: A newtonian message passing network for deep learning of interatomic potentials and forces. arXiv preprint arXiv:2108.02913 (2021).
Not in our library10.1039/d2dd00008c
- 24.
Klicpera, J., Becker, F. & Günnemann, S. Gemnet: Universal directional graph neural networks for molecules. arXiv preprint arXiv:2106.08903 (2021).
Not in our library
- 25.
- 26.
Qiao, Z. et al. Unite: Unitary n-body tensor equivariant network with applications to quantum chemistry. arXiv preprint arXiv:2105.14655 (2021).
Not in our library
- 27.
Grisafi, A., Wilkins, D. M., Willatt, M. J. & Ceriotti, M. Atomic-scale representation and statistical learning of tensorial properties. In Machine Learning in Chemistry: Data-Driven Algorithms, Learning Systems, and Predictions, 1–21 (ACS Publications, 2019).
Not in our library
- 28.
Weiler, M., Geiger, M., Welling, M., Boomsma, W. & Cohen, T. S. 3d steerable cnns: Learning rotationally equivariant features in volumetric data. Adv. Neural Inf. Process. Syst.31, 10381–10392 (2018).
Not in our library
- 29.
Kondor, R. N-body networks: a covariant hierarchical neural network architecture for learning atomic potentials. arXiv preprint arXiv:1803.01588 (2018).
Not in our library
- 30.
Kondor, R., Lin, Z. & Trivedi, S. Clebsch–gordan nets: a fully fourier space spherical convolutional neural network. Adv. Neural Inf. Process. Syst.31, 10117–10126 (2018).
Not in our library
- 31.
Geiger, M. et al. e3nn/e3nn: 2021-05-04 10.5281/zenodo.4735637 (2021).
Not in our library
- 32.
Hendrycks, D. & Gimpel, K. Gaussian error linear units (gelus). arXiv preprint arXiv:1606.08415 (2016).
Not in our library
- 33.
Larsen AH, et al. The atomic simulation environment—a python library for working with atoms. J. Phys. Condens. Matter. 2017;29:273002.
Not in our library10.1088/1361-648x/aa680e
- 34.
He, K., Zhang, X., Ren, S. & Sun, J. Deep residual learning for image recognition. In Proceedings of the IEEE conference on computer vision and pattern recognition, 770–778 (2016).
Not in our library
- 35.
Chmiela S, et al. Machine learning of accurate energy-conserving molecular force fields. Sci. Adv. 2017;3:e1603015.
Not in our library10.1126/sciadv.1603015
- 36.
- 37.
- 38.
Ko H-Y, et al. Isotope effects in liquid water via deep potential molecular dynamics. Mol. Phys. 2019;117:3269-3281.
Not in our library10.1080/00268976.2019.1652366
- 39.
Christensen AS, von Lilienfeld OA. On the role of gradients for machine learning of molecular energies and forces. Mach. learn.: sci. technol. 2020;1:045018.
Not in our library
- 40.
Devereux C, et al. Extending the applicability of the ani deep learning molecular potential to sulfur and halogens. J. Chem. Theory Comput. 2020;16:4192-4202.
Not in our library10.1021/acs.jctc.0c00121
- 41.
Christensen AS, Bratholm LA, Faber FA, Anatole von Lilienfeld O. Fchl revisited: Faster and more accurate quantum machine learning. J. Chem. Phys. 2020;152:044107.
Not in our library10.1063/1.5126701
- 42.
Drautz R. Atomic cluster expansion for accurate and transferable interatomic potentials. Phys. Rev. B. 2019;99:014104.
Not in our library10.1103/physrevb.99.014104
- 43.
Kovács, D. P. et al. Linear atomic cluster expansion force fields for organic molecules: beyond rmse. J. Chem. Theory Comput.17, 7696–711 (2021).
Not in our library10.1021/acs.jctc.1c00647
- 44.
Zhang, L. et al. End-to-end symmetry preserving inter-atomic potential energy model for finite and extended systems. Adv. Neural Inf. Process. Syst.31, (2018).
Not in our library
- 45.
Sim WS, Gardner P, King DA. Multiple bonding configurations of adsorbed formate on ag111. J. Phys. Chem. 1996;100:12509-12516.
Not in our library10.1021/jp9600726
- 46.
Wang G, Morikawa Y, Matsumoto T, Nakamura J. Why is formate synthesis insensitive to copper surface structures? J. Phys. Chem. B. 2006;110:9-11.
Not in our library10.1021/jp055689e
- 47.
Yu X, Bates JB, Jellison GE, Hart FX. A stable thin-film lithium electrolyte: lithium phosphorus oxynitride. J. Electrochem. Soc. 1997;144:524-532.
Not in our library10.1149/1.1837443
- 48.
Westover AS, et al. Plasma synthesis of spherical crystalline and amorphous electrolyte nanopowders for solid-state batteries. ACS Appl. Mater. Interfaces. 2020;12:11570-11578.
Not in our library10.1021/acsami.9b20812
- 49.
Li W, Ando Y, Minamitani E, Watanabe S. Study of li atom diffusion in amorphous li3po4 with neural network potential. J. Chem. Phys. 2017;147:214106.
Not in our library10.1063/1.4997242
- 50.
Cheng B, Engel EA, Behler J, Dellago C, Ceriotti M. Ab initio thermodynamics of liquid and solid water. Proceedings of the National Academy of Sciences. 2019;116:1110-1115.
Not in our library10.1073/pnas.1815117116
- 51.
Hestness, J. et al. Deep learning scaling is predictable, empirically. arXiv preprint arXiv:1712.00409 (2017).
Not in our library
- 52.
Paszke, A. et al. Pytorch: An imperative style, high-performance deep learning library. Adv. Neural Inf. Process. Syst.32, 8026–8037 (2019).
Not in our library
- 53.
Fey, M. & Lenssen, J. E. Fast graph representation learning with pytorch geometric. arXiv preprint arXiv:1903.02428 (2019).
Not in our library
- 54.
Hutter J, Iannuzzi M, Schiffmann F, VandeVondele J. cp2k: atomistic simulations of condensed matter systems. WIREs Computational Molecular Science. 2014;4:15-25.
Not in our library10.1002/wcms.1159
- 55.
Kresse G, Hafner J. Ab initiomolecular dynamics for liquid metals. Phys. Rev. B. 1993;47:558-561.
Not in our library10.1103/physrevb.47.558
- 56.
Kresse G, Furthmüller J. Efficiency of ab-initio total energy calculations for metals and semiconductors using a plane-wave basis set. Comput. Mater. Sci. 1996;6:15-50.
Not in our library10.1016/0927-0256(96)00008-0
- 57.
Kresse G, Furthmüller J. Efficient iterative schemes forab initiototal-energy calculations using a plane-wave basis set. Phys. Rev. B. 1996;54:11169-11186.
Not in our library10.1103/physrevb.54.11169
- 58.
Perdew JP, Burke K, Ernzerhof M. Generalized gradient approximation made simple. Phys. Rev. Lett. 1996;77:3865-3868.
Not in our library10.1103/physrevlett.77.3865
- 59.
Kresse G, Joubert D. From ultrasoft pseudopotentials to the projector augmented-wave method. Phys. Rev. B. 1999;59:1758-1775.
Not in our library10.1103/physrevb.59.1758
- 60.
Kingma, D. P. & Ba, J. Adam: A method for stochastic optimization. arXiv preprint arXiv:1412.6980 (2014).
Not in our library
- 61.
Loshchilov, I. & Hutter, F. Decoupled weight decay regularization. arXiv preprint arXiv:1711.05101 (2017).
Not in our library
- 62.
Reddi, S. J., Kale, S. & Kumar, S. On the convergence of adam and beyond. arXiv preprint arXiv:1904.09237 (2019).
Not in our library
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