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RNA modifications in cellular metabolism: implications for metabolism-targeted therapy and immunotherapy
Wei-Wei Liu, Si-Qing Zheng, Tian Li and 6 more
Signal Transduction and Targeted Therapy · 2024 · Review · CC BY
doi:10.1038/s41392-024-01777-5
Abstract
Cellular metabolism is an intricate network satisfying bioenergetic and biosynthesis requirements of cells. Relevant studies have been constantly making inroads in our understanding of pathophysiology, and inspiring development of therapeutics. As a crucial component of epigenetics at post-transcription level, RNA modification significantly determines RNA fates, further affecting various biological processes and cellular phenotypes. To be noted, immunometabolism defines the metabolic alterations occur on immune cells in different stages and immunological contexts. In this review, we characterize the distribution features, modifying mechanisms and biological functions of 8 RNA modifications, including N6-methyladenosine (m6A), N6,2′-O-dimethyladenosine (m6Am), N1-methyladenosine (m1A), 5-methylcytosine (m5C), N4-acetylcytosine (ac4C), N7-methylguanosine (m7G), Pseudouridine (Ψ), adenosine-to-inosine (A-to-I) editing, which are relatively the most studied types. Then regulatory roles of these RNA modification on metabolism in diverse health and disease contexts are comprehensively described, categorized as glucose, lipid, amino acid, and mitochondrial metabolism. And we highlight the regulation of RNA modifications on immunometabolism, further influencing immune responses. Above all, we provide a thorough discussion about clinical implications of RNA modification in metabolism-targeted therapy and immunotherapy, progression of RNA modification-targeted agents, and its potential in RNA-targeted therapeutics. Eventually, we give legitimate perspectives for future researches in this field from methodological requirements, mechanistic insights, to therapeutic applications.
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Lin SB, et al. Mettl1/Wdr4-mediated m7G tRNA methylome is required for normal mRNA translation and embryonic stem cell self-renewal and differentiation. Mol. Cell. 2018;71:244.
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Jack K, et al. rRNA pseudouridylation defects affect ribosomal ligand binding and translational fidelity from yeast to human cells. Mol. Cell. 2011;44:660-666.
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Zhao X, Yu YT. Pseudouridines in and near the branch site recognition region of U2 snRNA are required for snRNP biogenesis and pre-mRNA splicing in Xenopus oocytes. RNA. 2004;10:681-690.
Not in our library10.1261/rna.5159504
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Yang C, McPheeters DS, Yu YT. Psi35 in the branch site recognition region of U2 small nuclear RNA is important for pre-mRNA splicing in Saccharomyces cerevisiae. J. Biol. Chem. 2005;280:6655-6662.
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Yang WD, et al. Modulation of microRNA processing and expression through RNA editing by ADAR deaminases. Nat. Struct. Mol. Biol. 2006;13:13-21.
Not in our library10.1038/nsmb1041
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Nishikura K, et al. Substrate specificity of the dsRNA unwinding/modifying activity. EMBO J. 1991;10:3523-3532.
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Chandel NS. Glycolysis. Cold Spring Harb. Perspect. Biol. 2021;13:5.
Not in our library10.1101/cshperspect.a040535
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Grochowski LL, Xu H, White RH. Ribose-5-phosphate biosynthesis in Methanocaldococcus jannaschii occurs in the absence of a pentose-phosphate pathway. J. Bacteriol. 2005;187:7382-7389.
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Han HS, et al. Regulation of glucose metabolism from a liver-centric perspective. Exp. Mol. Med. 2016;48:e218.
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Sun J, et al. PARP1 is upregulated by hyperglycemia Via N6-methyladenosine modification and promotes diabetic retinopathy. Discov. Med. 2022;34:115-129.
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De Jesus DF, et al. m6A mRNA methylation regulates human β-cell biology in physiological states and in type 2 diabetes. Nat. Metab. 2019;1:765-774.
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Wang YQ, et al. m6A mRNA methylation controls functional maturation in neonatal murine β-cells. Diabetes. 2020;69:1708-1722.
Not in our library10.2337/db19-0906
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Regue L, et al. RNA m6A reader IMP2/IGF2BP2 promotes pancreatic beta-cell proliferation and insulin secretion by enhancing PDX1 expression. Mol. Metab. 2021;48:101209.
Not in our library10.1016/j.molmet.2021.101209
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Peng T, et al. LncRNA Airn alleviates diabetic cardiac fibrosis by inhibiting activation of cardiac fibroblasts via a m6A-IMP2-p53 axis. Biol. Direct. 2022;17:32.
Not in our library10.1186/s13062-022-00346-6
- 201.
- 202.
Khoshi A, et al. Association of Omentin rs2274907 and FTO rs9939609 gene polymorphisms with insulin resistance in Iranian individuals with newly diagnosed type 2 diabetes. Lipids Health Dis. 2019;18:142.
Not in our library10.1186/s12944-019-1085-5
- 203.
Hjort R, et al. Interaction between overweight and genotypes of HLA, TCF7L2, and FTO in relation to the risk of latent autoimmune diabetes in adults and type 2 diabetes. J. Clin. Endocr. Metab. 2019;104:4815-4826.
Not in our library10.1210/jc.2019-00183
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Nasser FA, et al. The association of the common fat mass and obesity associated gene polymorphisms with type 2 diabetes in obese Iraqi population. Diabetes Metab. Synd. 2019;13:2451-2455.
Not in our library10.1016/j.dsx.2019.06.024
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Yang Y, et al. Glucose is involved in the dynamic regulation of m6a in patients with type 2 diabetes. J. Clin. Endocr. Metab. 2019;104:665-673.
Not in our library10.1210/jc.2018-00619
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Peng SM, et al. Identification of entacapone as a chemical inhibitor of FTO mediating metabolic regulation through FOXO1. Sci. Transl. Med. 2019;11:eaau7116.
Not in our library10.1126/scitranslmed.aau7116
- 207.
Zhou J, et al. Methyladenosine guides mRNA alternative translation during integrated stress response. Mol. Cell. 2018;69:636.
Not in our library10.1016/j.molcel.2018.01.019
- 208.
Li K, et al. MicroRNA-214 suppresses gluconeogenesis by targeting activating transcriptional factor 4. J. Biol. Chem. 2015;290:8185-8195.
Not in our library10.1074/jbc.m114.633990
- 209.
Hu F, et al. MiR-495 regulates macrophage M1/M2 polarization and insulin resistance in high-fat diet-fed mice via targeting FTO. Pflug. Arch. 2019;471:1529-1537.
Not in our library10.1007/s00424-019-02316-w
- 210.
- 211.
- 212.
Ma L, et al. The essential roles of m(6)A RNA modification to stimulate ENO1-dependent glycolysis and tumorigenesis in lung adenocarcinoma. J. Exp. Clin. Cancer Res. 2022;41:36.
Not in our library10.1186/s13046-021-02200-5
- 213.
- 214.
Chen HR, et al. RNA N-6-methyladenosine methyltransferase METTL3 facilitates colorectal cancer by activating the m(6)A-GLUT1-mTORC1 axis and is a therapeutic target. Gastroenterology. 2021;160:1284.
Not in our library10.1053/j.gastro.2020.11.013
- 215.
Liu XS, et al. Overexpression of METTL3 associated with the metabolic status on (18)F-FDG PET/CT in patients with Esophageal Carcinoma. J. Cancer. 2020;11:4851-4860.
Not in our library10.7150/jca.44754
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Li FJ, et al. Glutamate from nerve cells promotes perineural invasion in pancreatic cancer by regulating tumor glycolysis through HK2 mRNA-m6A modification. Pharmacol. Res. 2023;187:106555.
Not in our library10.1016/j.phrs.2022.106555
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Zhang K, et al. N-6-methyladenosine-mediated LDHA induction potentiates chemoresistance of colorectal cancer cells through metabolic reprogramming. Theranostics. 2022;12:4802-4817.
Not in our library10.7150/thno.73746
- 218.
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Wang Q, et al. METTL3-mediated m(6)A modification of HDGF mRNA promotes gastric cancer progression and has prognostic significance. Gut. 2020;69:1193-1205.
Not in our library10.1136/gutjnl-2019-319639
- 220.
Zhang Q, et al. METTL3-induced DLGAP1-AS2 promotes non-small cell lung cancer tumorigenesis through m(6)A/c-Myc-dependent aerobic glycolysis. Cell Cycle. 2022;21:2602-2614.
Not in our library10.1080/15384101.2022.2105885
- 221.
- 222.
Yang N, et al. HBXIP drives metabolic reprogramming in hepatocellular carcinoma cells via METTL3-mediated m6A modification of HIF-1alpha. J. Cell Physiol. 2021;236:3863-3880.
Not in our library10.1002/jcp.30128
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Xu Y, et al. The N6-methyladenosine METTL3 regulates tumorigenesis and glycolysis by mediating m6A methylation of the tumor suppressor LATS1 in breast cancer. J. Exp. Clin. Cancer Res. 2023;42:10.
Not in our library10.1186/s13046-022-02581-1
- 224.
Xu W, et al. m6A RNA methylation-mediated NDUFA4 promotes cell proliferation and metabolism in gastric cancer. Cell Death Dis. 2022;13:715.
Not in our library10.1038/s41419-022-05132-w
- 225.
Cai J, et al. METTL3 promotes glycolysis and cholangiocarcinoma progression by mediating the m6A modification of AKR1B10. Cancer Cell Int. 2022;22:385.
Not in our library10.1186/s12935-022-02809-2
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Chen Z, et al. Non-SMC condensin I complex subunit H participates in anti-programmed cell death-1 resistance of clear cell renal cell carcinomas. Cell Prolif. 2023;56:e13400.
Not in our library10.1111/cpr.13400
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Xue L, et al. m(6)A transferase METTL3-induced lncRNA ABHD11-AS1 promotes the Warburg effect of non-small-cell lung cancer. J. Cell Physiol. 2021;236:2649-2658.
Not in our library10.1002/jcp.30023
- 228.
Liu J, Yuan JF, Wang YZ. METTL3-stabilized lncRNA SNHG7 accelerates glycolysis in prostate cancer via SRSF1/c-Myc axis. Exp. Cell Res. 2022;416:113149.
Not in our library10.1016/j.yexcr.2022.113149
- 229.
Liu ZH, et al. N6-methyladenosine-modified circular RNA QSOX1 promotes colorectal cancer resistance to anti-CTLA-4 therapy through induction of intratumoral regulatory T cells. Drug Resist. Update. 2022;65:100886.
Not in our library10.1016/j.drup.2022.100886
- 230.
He Y, et al. Linc-UROD stabilizes ENO1 and PKM to strengthen glycolysis, proliferation and migration of pancreatic cancer cells. Transl. Oncol. 2023;27:101583.
Not in our library10.1016/j.tranon.2022.101583
- 231.
Hou Y, et al. METTL14 modulates glycolysis to inhibit colorectal tumorigenesis in p53-wild-type cells. EMBO Rep. 2023;24:e56325.
Not in our library10.15252/embr.202256325
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Du L, et al. USP48 is upregulated by Mettl14 to attenuate hepatocellular carcinoma via regulating SIRT6 stabilization. Cancer Res. 2021;81:3822-3834.
Not in our library10.1158/0008-5472.can-20-4163
- 233.
- 234.
Lin JX, et al. m6A methylation mediates LHPP acetylation as a tumour aerobic glycolysis suppressor to improve the prognosis of gastric cancer. Cell Death Dis. 2022;13:463.
Not in our library10.1038/s41419-022-04859-w
- 235.
Yu H, et al. N-6-methyladenosine (m(6)A) methyltransferase WTAP accelerates the Warburg effect of gastric cancer through regulating HK2 stability. Biomed. Pharmacother. 2021;133:111075.
Not in our library10.1016/j.biopha.2020.111075
- 236.
Lyu YY, et al. HIF-1 alpha Regulated WTAP overexpression promoting the Warburg effect of ovarian cancer by m6A-dependent manner. J. Immunol. Res. 2022;2022:6130806.
Not in our library10.1155/2022/6130806
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Ou BC, et al. C5aR1-positive neutrophils promote breast cancer glycolysis through WTAP-dependent m6A methylation of ENO1. Cell Death Dis. 2021;12:737.
Not in our library10.1038/s41419-021-04028-5
- 238.
Zhang Y, et al. WTAP mediates FOXP3 mRNA stability to promote SMARCE1 expression and augment glycolysis in colon adenocarcinoma. Mamm. Genome. 2022;33:654-671.
Not in our library10.1007/s00335-022-09962-z
- 239.
Li H, Li C, Zhang B, Jiang H. Lactoferrin suppresses the progression of colon cancer under hyperglycemia by targeting WTAP/m(6)A/NT5DC3/HKDC1 axis. J. Transl. Med. 2023;21:156.
Not in our library10.1186/s12967-023-03983-1
- 240.
Li Y, et al. N(6)-methyladenosine methyltransferase KIAA1429 elevates colorectal cancer aerobic glycolysis via HK2-dependent manner. Bioengineered. 2022;13:11923-11932.
Not in our library10.1080/21655979.2022.2065952
- 241.
Yang DS, et al. m(6)A transferase KIAA1429-stabilized LINC00958 accelerates gastric cancer aerobic glycolysis through targeting GLUT1. IUBMB Life. 2021;73:1325-1333.
Not in our library10.1002/iub.2545
- 242.
Yang F, et al. Circ-CTNNB1 drives aerobic glycolysis and osteosarcoma progression via m6A modification through interacting with RBM15. Cell Proliferat. 2023;56:1.
Not in our library10.1111/cpr.13344
- 243.
Wang QB, et al. ZC3H13 inhibits the progression of hepatocellular carcinoma through m(6)A-PKM2-mediated glycolysis and enhances chemosensitivity. J Oncol. 2021;2021:1328444.
Not in our library10.1155/2021/1328444
- 244.
Li J, et al. m6A demethylase FTO promotes hepatocellular carcinoma tumorigenesis via mediating PKM2 demethylation. Am. J. Transl. Res. 2019;11:6084-6092.
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- 245.
Li XD, et al. Long noncoding RNA just proximal to X-inactive specific transcript facilitates aerobic glycolysis and temozolomide chemoresistance by promoting stability of PDK1 mRNA in an m6A-dependent manner in glioblastoma multiforme cells. Cancer Sci. 2021;112:4543-4552.
Not in our library10.1111/cas.15072
- 246.
Yanar S, et al. Proteomics analysis of meclofenamic acid-treated small cell lung carcinoma cells revealed changes in cellular energy metabolism for cancer cell survival. J. Biochem. Mol. Toxic. 2023;37:4.
Not in our library10.1002/jbt.23289
- 247.
Qing Y, et al. R-2-hydroxyglutarate attenuates aerobic glycolysis in leukemia by targeting the FTO/m(6)A/PFKP/LDHB axis. Mol. Cell. 2021;81:922.
Not in our library10.1016/j.molcel.2020.12.026
- 248.
Liu Y, et al. Tumors exploit FTO-mediated regulation of glycolytic metabolism to evade immune surveillance. Cell Metab. 2021;33:1221.
Not in our library10.1016/j.cmet.2021.04.001
- 249.
Liu CY, et al. E6E7 regulates the HK2 expression in cervical cancer via GSK3B/FTO signal. Arch. Biochem. Biophys. 2022;729:109389.
Not in our library10.1016/j.abb.2022.109389
- 250.
- 251.
- 252.
Liu Z, Chen Y, Wang L, Ji S. ALKBH5 promotes the proliferation of glioma cells via enhancing the mRNA stability of G6PD. Neurochem. Res. 2021;46:3003-3011.
Not in our library10.1007/s11064-021-03408-9
- 253.
Liu H, et al. ALKBH5-mediated m6A demethylation of GLUT4 mRNA promotes glycolysis and resistance to HER2-targeted therapy in breast cancer. Cancer Res. 2022;82:3974-3986.
Not in our library10.1158/0008-5472.can-22-0800
- 254.
Ji X, et al. ALKBH5-induced circular RNA NRIP1 promotes glycolysis in thyroid cancer cells by targeting PKM2. Cancer Sci. 2023;114:2318-2334.
Not in our library10.1111/cas.15772
- 255.
Zhao L, et al. UBR7 inhibits HCC tumorigenesis by targeting Keap1/Nrf2/Bach1/HK2 and glycolysis. J. Exp. Clin. Cancer Res. 2022;41:330.
Not in our library10.1186/s13046-022-02528-6
- 256.
Wang YQ, et al. HLA complex P5 upregulation is correlated with poor prognosis and tumor progression in esophageal squamous cell carcinoma. Bioengineered. 2022;13:9301-9311.
Not in our library10.1080/21655979.2022.2051854
- 257.
Sheng H, et al. YTH domain family 2 promotes lung cancer cell growth by facilitating 6-phosphogluconate dehydrogenase mRNA translation. Carcinogenesis. 2020;41:541-550.
Not in our library10.1093/carcin/bgz152
- 258.
Chen BX, et al. N6-methyladenosine modification of circ_0003215 suppresses the pentose phosphate pathway and malignancy of colorectal cancer through the miR-663b/DLG4/G6PD axis. Cell Death Dis. 2022;13:804.
Not in our library10.1038/s41419-022-05245-2
- 259.
Li HY. Downregulation of microRNA-6125 promotes colorectal cancer growth through YTHDF2-dependent recognition of N6-methyladenosine-modified GSK3 beta. Clin. Transl. Med. 2022;12:e1085.
Not in our library10.1002/ctm2.602
- 260.
- 261.
Zhou R, et al. A functional loop between YTH domain family protein YTHDF3 mediated m(6)A modification and phosphofructokinase PFKL in glycolysis of hepatocellular carcinoma. J. Exp. Clin. Cancer Res. 2022;41:334.
Not in our library10.1186/s13046-022-02538-4
- 262.
- 263.
Liu DY, et al. N-6-methyladenosine reader YTHDF3 contributes to the aerobic glycolysis of osteosarcoma through stabilizing PGK1 stability. J. Cancer Res. Clin. 2022;149:4601-4610.
Not in our library10.1007/s00432-022-04337-y
- 264.
Luo F, Lin K. N-6-methyladenosine (m(6)A) reader IGF2BP1 accelerates gastric cancer aerobic glycolysis in c-Myc-dependent manner. Exp. Cell Res. 2022;417:113176.
Not in our library10.1016/j.yexcr.2022.113176
- 265.
Yuan B, Zhou J. N6-methyladenosine (m6A) reader IGF2BP1 facilitates clear-cell renal cell carcinoma aerobic glycolysis. PeerJ. 2023;11:e14591.
Not in our library10.7717/peerj.14591
- 266.
Xu K, Dai XJ, Wu JK, Wen K. N-6-methyladenosine (m(6)A) reader IGF2BP2 stabilizes HK2 stability to accelerate the Warburg effect of oral squamous cell carcinoma progression. J. Cancer Res. Clin. 2022;148:3375-3384.
Not in our library10.1007/s00432-022-04093-z
- 267.
- 268.
Ye Y, et al. lncRNA miR4458HG modulates hepatocellular carcinoma progression by activating m6A-dependent glycolysis and promoting the polarization of tumor-associated macrophages. Cell Mol. Life Sci. 2023;80:99.
Not in our library10.1007/s00018-023-04741-8
- 269.
Cui YM, et al. m(6)A-modified circFOXK2 targets GLUT1 to accelerate oral squamous cell carcinoma aerobic glycolysis. Cancer Gene Ther. 2023;30:163-171.
Not in our library10.1038/s41417-022-00526-6
- 270.
Xu TP, et al. LOC101929709 promotes gastric cancer progression by aiding LIN28B to stabilize c-MYC mRNA. Gastr. Cancer. 2023;26:169-186.
Not in our library10.1007/s10120-022-01348-z
- 271.
Wu YM, et al. RNA m(1)A methylation regulates glycolysis of cancer cells through modulating ATP5D. Proc. Natl Acad. Sci. USA. 2022;119:e2119038119.
Not in our library10.1073/pnas.2119038119
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Wang JZ, et al. The role of the HIF-1 alpha/ALYREF/PKM2 axis in glycolysis and tumorigenesis of bladder cancer. Cancer Commun. 2021;41:560-575.
Not in our library10.1002/cac2.12158
- 273.
Xu FS, et al. N7-methylguanosine regulatory genes well represented by METTL1 define vastly different prognostic, immune and therapy landscapes in adrenocortical carcinoma. Am. J. Cancer Res. 2023;13:538.
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- 274.
Zhang BJ, et al. m6A demethylase FTO attenuates cardiac dysfunction by regulating glucose uptake and glycolysis in mice with pressure overload-induced heart failure. Signal Transduct. Tar. 2021;6:377.
Not in our library10.1038/s41392-021-00699-w
- 275.
Zhou Y, et al. METTL3 boosts glycolysis and cardiac fibroblast proliferation by increasing AR methylation. Int. J. Biol. Macromol. 2022;223:899-915.
Not in our library10.1016/j.ijbiomac.2022.11.042
- 276.
Cai W, et al. METTL3-dependent glycolysis regulates dental pulp stem cell differentiation. J. Dent. Res. 2022;101:580-589.
Not in our library10.1177/00220345211051594
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Jiao Y, Williams A, Wei N. Quercetin ameliorated insulin resistance via regulating METTL3-mediated N6-methyladenosine modification of PRKD2 mRNA in skeletal muscle and C2C12 myocyte cell line. Nutr. Metab. Cardiovasc. 2022;32:2655-2668.
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Fahy E, et al. Update of the LIPID MAPS comprehensive classification system for lipids. J. Lipid Res. 2009;50:S9-14,.
Not in our library10.1194/jlr.r800095-jlr200
- 279.
Ahmed MH, Byrne CD. Modulation of sterol regulatory element binding proteins (SREBPs) as potential treatments for non-alcoholic fatty liver disease (NAFLD). Drug Discov. Today. 2007;12:740-747.
Not in our library10.1016/j.drudis.2007.07.009
- 280.
Li L, et al. Differential requirement for de novo lipogenesis in cholangiocarcinoma and hepatocellular carcinoma of mice and humans. Hepatology. 2016;63:1900-1913.
Not in our library10.1002/hep.28508
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Luo J, Yang H, Song BL. Mechanisms and regulation of cholesterol homeostasis. Nat. Rev. Mol. Cell Biol. 2020;21:225-245.
Not in our library10.1038/s41580-019-0190-7
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Xie W, et al. METTL3 inhibits hepatic insulin sensitivity via N6-methyladenosine modification of Fasn mRNA and promoting fatty acid metabolism. Biochem. Biophys. Res. Commun. 2019;518:120-126.
Not in our library10.1016/j.bbrc.2019.08.018
- 285.
Liu Q, et al. ZFP217 regulates adipogenesis by controlling mitotic clonal expansion in a METTL3-m(6)A dependent manner. RNA Biol. 2019;16:1785-1793.
Not in our library10.1080/15476286.2019.1658508
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Ningombam SS, et al. Differential distribution and association of FTO gene polymorphism with obesity: a cross-sectional study among two tribal populations of India with East-Asian ancestry. Gene. 2018;647:198-204.
Not in our library10.1016/j.gene.2018.01.009
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Hebbar P, et al. Variant rs1421085 associates with increased body weight, soft lean mass, and total body water through interaction with ghrelin and apolipoproteins in Arab population. Front. Genet. 2020;10:1411.
Not in our library10.3389/fgene.2019.01411
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Zhao X, et al. FTO-dependent demethylation of N6-methyladenosine regulates mRNA splicing and is required for adipogenesis. Cell Res. 2014;24:1403-1419.
Not in our library10.1038/cr.2014.151
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Wu R, et al. FTO regulates adipogenesis by controlling cell cycle progression via m(6)A-YTHDF2 dependent mechanism. Biochim. Biophys. Acta Mol. Cell Biol. Lipids. 2018;1863:1323-1330.
Not in our library10.1016/j.bbalip.2018.08.008
- 290.
Wu R, et al. Epigallocatechin gallate targets FTO and inhibits adipogenesis in an mRNA m(6)A-YTHDF2-dependent manner. Int. J. Obes. 2018;42:1378-1388.
Not in our library10.1038/s41366-018-0082-5
- 291.
Song T, et al. Zfp217 mediates m6A mRNA methylation to orchestrate transcriptional and post-transcriptional regulation to promote adipogenic differentiation. Nucleic Acids Res. 2019;47:6130-6144.
Not in our library10.1093/nar/gkz312
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Shen GS, et al. The GDF11-FTO-PPARγ axis controls the shift of osteoporotic MSC fate to adipocyte and inhibits bone formation during osteoporosis. BBA-Mol. Basis Dis. 2018;1864:3644-3654.
Not in our library10.1016/j.bbadis.2018.09.015
- 293.
Kruger N, et al. Loss of endothelial FTO antagonizes obesity-induced metabolic and vascular dysfunction. Circ. Res. 2020;126:232-242.
Not in our library10.1161/circresaha.119.315531
- 294.
Wu WC, et al. AMPK regulates lipid accumulation in skeletal muscle cells through FTO-dependent demethylation of N6-methyladenosine. Sci. Rep. 2017;7:41606.
Not in our library10.1038/srep41606
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Zhou XH, et al. The beneficial effects of betaine on dysfunctional adipose tissue and N6-methyladenosine mRNA methylation requires the AMP-activated protein kinase α1 subunit. J. Nutr. Biochem. 2015;26:1678-1684.
Not in our library10.1016/j.jnutbio.2015.08.014
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Jiang Q, et al. promotes adipogenesis in intramuscular preadipocytes an m6A-YTHDF1-dependent mechanism. FASEB J. 2019;33:2971-2981.
Not in our library10.1096/fj.201801393rrr
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Liu Q, et al. ZFP217 regulates adipogenesis by controlling mitotic clonal expansion in a METTL3-m6A dependent manner. RNA Biol. 2019;16:1785-1793.
Not in our library10.1080/15476286.2019.1658508
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Liu W, et al. ‘Micro-managers’ of hepatic lipid metabolism and NAFLD. Wiley Interdiscip. Rev. Rna. 2015;6:581-593.
Not in our library10.1002/wrna.1295
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Yang Y, et al. Dysregulated m6A modification promotes lipogenesis and development of non-alcoholic fatty liver disease and hepatocellular carcinoma. Mol. Ther. 2022;30:2342-2353.
Not in our library10.1016/j.ymthe.2022.02.021
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Peng Z, et al. METTL3-m(6)A-Rubicon axis inhibits autophagy in nonalcoholic fatty liver disease. Mol. Ther. 2022;30:932-946.
Not in our library10.1016/j.ymthe.2021.09.016
- 301.
Chen J, et al. FTO-dependent function of N6-methyladenosine is involved in the hepatoprotective effects of betaine on adolescent mice. J. Physiol. Biochem. 2015;71:405-413.
Not in our library10.1007/s13105-015-0420-1
- 302.
Guo J, et al. Fat mass and obesity-associated gene enhances oxidative stress and lipogenesis in nonalcoholic fatty liver disease. Dig. Dis. Sci. 2013;58:1004-1009.
Not in our library10.1007/s10620-012-2516-6
- 303.
Hu Y, et al. GR-mediated FTO transactivation induces lipid accumulation in hepatocytes via demethylation of m(6)A on lipogenic mRNAs. RNA Biol. 2020;17:930-942.
Not in our library10.1080/15476286.2020.1736868
- 304.
Sun LM, et al. Differential mechanisms regarding triclosan vs. bisphenol A and fluorene-9-bisphenol induced zebrafish lipid-metabolism disorders by RNA-seq. Chemosphere. 2020;251:126318.
Not in our library10.1016/j.chemosphere.2020.126318
- 305.
Hu Y, et al. GR-mediated FTO transactivation induces lipid accumulation in hepatocytes via demethylation of m6A on lipogenic mRNAs. RNA Biol. 2020;17:930-942.
Not in our library10.1080/15476286.2020.1736868
- 306.
Li S, et al. Exenatide ameliorates hepatic steatosis and attenuates fat mass and gene expression through PI3K signaling pathway in nonalcoholic fatty liver disease. Braz. J. Med. Biol. Res. 2018;51:e7299.
Not in our library10.1590/1414-431x20187299
- 307.
Gan X, et al. FTO promotes liver inflammation by suppressing m6A mRNA methylation of IL-17RA. Front. Oncol. 2022;12:989353.
Not in our library10.3389/fonc.2022.989353
- 308.
Wang HQ, et al. LINC01468 drives NAFLD-HCC progression through CUL4A-linked degradation of SHIP2. Cell Death Discov. 2022;8:499.
Not in our library10.1038/s41420-022-01234-8
- 309.
Yang JJ, et al. ALKBH5 ameliorated liver fibrosis and suppressed HSCs activation via triggering PTCH1 activation in an m6A dependent manner. Eur. J. Pharmacol. 2022;922:174900.
Not in our library10.1016/j.ejphar.2022.174900
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Sun RM, et al. The m6A reader YTHDF3-mediated PRDX3 translation alleviates liver fibrosis. Redox Biol. 2022;54:102378.
Not in our library10.1016/j.redox.2022.102378
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Libby P, Ridker PM, Hansson GK. Progress and challenges in translating the biology of atherosclerosis. Nature. 2011;473:317-325.
Not in our library10.1038/nature10146
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Back M, et al. Inflammation and its resolution in atherosclerosis: mediators and therapeutic opportunities. Nat. Rev. Cardiol. 2019;16:389-406.
Not in our library10.1038/s41569-019-0169-2
- 313.
Chen J, et al. Silencing METTL3 stabilizes atherosclerotic plaques by regulating the phenotypic transformation of vascular smooth muscle cells via the miR-375-3p/PDK1 axis. Cardiovasc. Drugs Ther. 2023;37:471-486.
Not in our library10.1007/s10557-022-07348-6
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Liu Y, et al. Methyltransferase-like 14 silencing relieves the development of atherosclerosis via m(6)A modification of p65 mRNA. Bioengineered. 2022;13:11832-11843.
Not in our library10.1080/21655979.2022.2031409
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Gong C, Fan Y, Liu J. METTL14 mediated m6A modification to LncRNA ZFAS1/ RAB22A: A novel therapeutic target for atherosclerosis. Int. J. Cardiol. 2021;328:177.
Not in our library10.1016/j.ijcard.2020.12.002
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Mo C, et al. Fat mass and obesity-associated protein attenuates lipid accumulation in macrophage foam cells and alleviates atherosclerosis in apolipoprotein E-deficient mice. J. Hypertens. 2017;35:810-821.
Not in our library10.1097/hjh.0000000000001255
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Yang Z, et al. Critical roles of FTO-mediated mRNA m6A demethylation in regulating adipogenesis and lipid metabolism: implications in lipid metabolic disorders. Genes Dis. 2022;9:51-61.
Not in our library10.1016/j.gendis.2021.01.005
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Ladanyi A, et al. Adipocyte-induced CD36 expression drives ovarian cancer progression and metastasis. Oncogene. 2018;37:2285-2301.
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Doll S, et al. ACSL4 dictates ferroptosis sensitivity by shaping cellular lipid composition. Nat. Chem. Biol. 2017;13:91-98.
Not in our library10.1038/nchembio.2239
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Hisano Y, Hla T. Bioactive lysolipids in cancer and angiogenesis. Pharm. Ther. 2019;193:91-98.
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Liu PH, et al. m(6)A-induced lncDBET promotes the malignant progression of bladder cancer through FABP5-mediated lipid metabolism. Theranostics. 2022;12:6291-6307.
Not in our library10.7150/thno.71456
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Zhong X, et al. Circadian clock regulation of hepatic lipid metabolism by modulation of m(6)A mRNA methylation. Cell Rep. 2018;25:1816-1828 e1814.
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Chen ZJ, et al. N6-methyladenosine-induced ERR. triggers chemoresistance of cancer cells through upregulation of ABCB1 and metabolic reprogramming. Theranostics. 2020;10:3382-3396.
Not in our library10.7150/thno.40144
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Peng H, et al. N(6)-methyladenosine (m(6)A) in 18S rRNA promotes fatty acid metabolism and oncogenic transformation. Nat. Metab. 2022;4:1041-1054.
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Sun DL, et al. Fat mass and obesity-associated protein regulates lipogenesis via m(6)A modification in fatty acid synthase mRNA. Cell Biol. Int. 2021;45:334-344.
Not in our library10.1002/cbin.11490
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Duan XR, et al. m6A demethylase FTO promotes tumor progression via regulation of lipid metabolism in esophageal cancer. Cell Biosci. 2022;12:60.
Not in our library10.1186/s13578-022-00798-3
- 327.
Zhen L, Pan WY. ALKBH5 inhibits the SIRT3/ACC1 axis to regulate fatty acid metabolism via an m6A-IGF2BP1-dependent manner in cervical squamous cell carcinoma. Clin. Exp. Pharm. Pract. 2023;50:380-392.
Not in our library10.1111/1440-1681.13754
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Zhou B, et al. N-6-methyladenosine reader protein YT521-B homology domain-containing 2 suppresses liver steatosis by regulation of mRNA stability of lipogenic genes. Hepatology. 2021;73:91-103.
Not in our library10.1002/hep.31220
- 329.
- 330.
Guo W, et al. M6A methylation of DEGS2, a key ceramide-synthesizing enzyme, is involved in colorectal cancer progression through ceramide synthesis. Oncogene. 2021;40:5913-5924.
Not in our library10.1038/s41388-021-01987-z
- 331.
Cheng Y, et al. Decoding m(6)A RNA methylome identifies PRMT6-regulated lipid transport promoting AML stem cell maintenance. Cell Stem Cell. 2023;30:69-85 e67.
Not in our library10.1016/j.stem.2022.12.003
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Jia YX, et al. Long non-coding RNA NEAT1 mediated RPRD1B stability facilitates fatty acid metabolism and lymph node metastasis via c-Jun/c-Fos/SREBP1 axis in gastric cancer. J. Exp. Clin. Cancer Res. 2022;41:287.
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- 333.
Guo HM, et al. m(6)A Reader HNRNPA2B1 promotes esophageal cancer progression via up-regulation of ACLY and ACC1. Front. Oncol. 2020;10:553045.
Not in our library10.3389/fonc.2020.553045
- 334.
Liu Y, et al. mRNA m(5)C inhibits adipogenesis and promotes myogenesis by respectively facilitating YBX2 and SMO mRNA export in ALYREF-m(5)C manner. Cell Mol. Life Sci. 2022;79:481.
Not in our library10.1007/s00018-022-04474-0
- 335.
Yang M, et al. NSUN2 promotes osteosarcoma progression by enhancing the stability of FABP5 mRNA via m(5)C methylation. Cell Death Dis. 2023;14:125.
Not in our library10.1038/s41419-023-05646-x
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Xu J, et al. RNA 5-methylcytosine regulators contribute to metabolism heterogeneity and predict prognosis in ovarian cancer. Front. Cell Dev. Biol. 2022;10:807786.
Not in our library10.3389/fcell.2022.807786
- 337.
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Courtney KD, et al. Isotope tracing of human clear cell renal cell carcinomas demonstrates suppressed glucose oxidation in vivo. Cell Metab. 2018;28:793-800.e792.
Not in our library10.1016/j.cmet.2018.07.020
- 339.
- 340.
Zhang X, et al. The m(6)A methyltransferase METTL3 modifies PGC-1alpha mRNA promoting mitochondrial dysfunction and oxLDL-induced inflammation in monocytes. J. Biol. Chem. 2021;297:101058.
Not in our library10.1016/j.jbc.2021.101058
- 341.
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Liu XC, et al. Adenylate kinase 4 modulates the resistance of breast cancer cells to tamoxifen through an m(6)A-based epitranscriptomic mechanism. Mol. Ther. 2020;28:2593-2604.
Not in our library10.1016/j.ymthe.2020.09.007
- 344.
Hou HY. METTL3 promotes the proliferation and invasion of esophageal cancer cells partly through AKT signaling pathway. Pathol. Res. Pract. 2020;216:153087.
Not in our library10.1016/j.prp.2020.153087
- 345.
Sun KY, et al. METTL14-dependent maturation of pri-miR-17 regulates mitochondrial homeostasis and induces chemoresistance in colorectal cancer. Cell Death Dis. 2023;14:148.
Not in our library10.1038/s41419-023-05670-x
- 346.
Deng P, et al. Long-term cadmium exposure impairs cognitive function by activating lnc-Gm10532/m6A/FIS1 axis-mediated mitochondrial fission and dysfunction. Sci. Total Environ. 2023;858:159950.
Not in our library10.1016/j.scitotenv.2022.159950
- 347.
Du YD, et al. N6-methyladenosine demethylase FTO impairs hepatic ischemia-reperfusion injury via inhibiting Drp1-mediated mitochondrial fragmentation. Cell Death Dis. 2021;12:442.
Not in our library10.1038/s41419-021-03622-x
- 348.
Li N, et al. Gene characteristics and prognostic values of m(6)A RNA methylation regulators in nonsmall cell lung cancer. J. Health. Eng. 2021;2021:2257066.
Not in our library10.1155/2021/2257066
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Wang ZS, et al. Expression and prognostic potential of ribosome 18S RNA m(6)A methyltransferase METTL5 in gastric cancer. Cancer Cell Int. 2021;21:569.
Not in our library10.1186/s12935-021-02274-3
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Wang C, et al. Crosstalk of oxidative phosphorylation-related subtypes, establishment of a prognostic signature and immune infiltration characteristics in colorectal adenocarcinoma. Cancers. 2022;14:4503.
Not in our library10.3390/cancers14184503
- 351.
Yin R, et al. Differential m(6)A RNA landscapes across hematopoiesis reveal a role for IGF2BP2 in preserving hematopoietic stem cell function. Cell Stem Cell. 2022;29:149-159.e147.
Not in our library10.1016/j.stem.2021.09.014
- 352.
Sun L, et al. RNA-binding protein RALY reprogrammes mitochondrial metabolism via mediating miRNA processing in colorectal cancer. Gut. 2021;70:1698-1712.
Not in our library10.1136/gutjnl-2020-320652
- 353.
Li GW, Lu XF, Xu QQ, Jin YP. The FDX1 methylation regulatory mechanism in the malignant phenotype of glioma. Genomics. 2023;115:110601.
Not in our library10.1016/j.ygeno.2023.110601
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Jia C, et al. HNRNPA2B1-mediated m6A modification of TLR4 mRNA promotes progression of multiple myeloma. J. Transl. Med. 2022;20:537.
Not in our library10.1186/s12967-022-03750-8
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Curi R, et al. Molecular mechanisms of glutamine action. J. Cell Physiol. 2005;204:392-401.
Not in our library10.1002/jcp.20339
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Xiao YR, et al. The m(6)A RNA demethylase FTO is a HIF-independent synthetic lethal partner with the VHL tumor suppressor. Proc. Natl Acad. Sci. USA. 2020;117:21441-21449.
Not in our library10.1073/pnas.2000516117
- 358.
Han ST, et al. Targeting ATF4-dependent pro-survival autophagy to synergize glutaminolysis inhibition. Theranostics. 2021;11:8464-8479.
Not in our library10.7150/thno.60028
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Zhou J, et al. N(6)-methyladenosine guides mRNA alternative translation during integrated stress response. Mol. Cell. 2018;69:636-647.e637.
Not in our library10.1016/j.molcel.2018.01.019
- 360.
Chen P, et al. Targeting YTHDF1 effectively re-sensitizes cisplatin-resistant colon cancer cells by modulating GLS-mediated glutamine metabolism. Mol. Ther.Oncol. 2021;20:228-239.
Not in our library10.1016/j.omto.2021.01.001
- 361.
Weng HY, et al. The m(6)A reader IGF2BP2 regulates glutamine metabolism and represents a therapeutic target in acute myeloid leukemia. Cancer Cell. 2022;40:1566.
Not in our library10.1016/j.ccell.2022.10.004
- 362.
Chen T, et al. WZ35 inhibits gastric cancer cell metastasis by depleting glutathione to promote cellular metabolic remodeling. Cancer Lett. 2023;555:216044.
Not in our library10.1016/j.canlet.2022.216044
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Han L, et al. METTL16 drives leukemogenesis and leukemia stem cell self-renewal by reprogramming BCAA metabolism. Cell Stem Cell. 2023;30:52.
Not in our library10.1016/j.stem.2022.12.006
- 364.
- 365.
Zhu YY, et al. The E3 ligase VHL promotes follicular helper T cell differentiation via glycolytic-epigenetic control. J. Exp. Med. 2019;216:1664-1681.
Not in our library10.1084/jem.20190337
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Chang CH, et al. Metabolic competition in the tumor microenvironment is a driver of cancer progression. Cell. 2015;162:1229-1241.
Not in our library10.1016/j.cell.2015.08.016
- 367.
Zhu X, Tang H, Yang M, Yin K. N6-methyladenosine in macrophage function: a novel target for metabolic diseases. Trends Endocrinol. Metab. 2023;34:66-84.
Not in our library10.1016/j.tem.2022.12.006
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Ning HF, et al. RBM4 regulates M1 macrophages polarization through targeting STAT1-mediated glycolysis. Int. Immunopharmacol. 2020;83:106432.
Not in our library10.1016/j.intimp.2020.106432
- 369.
Bian Y, et al. Cancer SLC43A2 alters T cell methionine metabolism and histone methylation. Nature. 2020;585:277-282.
Not in our library10.1038/s41586-020-2682-1
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Brand A, et al. LDHA-associated lactic acid production blunts tumor immunosurveillance by T and NK cells. Cell Metab. 2016;24:657-671.
Not in our library10.1016/j.cmet.2016.08.011
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Reinfeld BI, et al. Cell-programmed nutrient partitioning in the tumour microenvironment. Nature. 2021;593:282.
Not in our library10.1038/s41586-021-03442-1
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Gou YL, et al. Ectopic endometriotic stromal cells-derived lactate induces M2 macrophage polarization via Mettl3/Trib1/ERK/STAT3 signalling pathway in endometriosis. Immunology. 2023;168:389-402.
Not in our library10.1111/imm.13574
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Zhao W, et al. RNA helicase DDX5 participates in oxLDL-induced macrophage scavenger receptor 1 expression by suppressing mRNA degradation. Exp. Cell Res. 2018;366:114-120.
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Kumagai S, et al. An oncogenic alteration creates a microenvironment that promotes tumor progression by conferring a metabolic advantage to regulatory T cells. Immunity. 2020;53:187.
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Cao W, et al. Oxidized lipids block antigen cross-presentation by dendritic cells in cancer. J. Immunol. 2014;192:2920-2931.
Not in our library10.4049/jimmunol.1302801
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Herber DL, et al. Lipid accumulation and dendritic cell dysfunction in cancer. Nat. Med. 2010;16:880-U857.
Not in our library10.1038/nm.2172
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Gokhale NS, Horner SM. RNA modifications go viral. Plos Pathog. 2017;13:e1006188.
Not in our library10.1371/journal.ppat.1006188
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Xue MG, et al. Viral RNA N6-methyladenosine modification modulates both innate and adaptive immune responses of human respiratory syncytial virus. PloS Pathog. 2021;17:e1010142.
Not in our library10.1371/journal.ppat.1010142
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Rubio RM, et al. RNA m(6) A modification enzymes shape innate responses to DNA by regulating interferon beta. Genes Dev. 2018;32:1472-1484.
Not in our library10.1101/gad.319475.118
- 381.
Xu J, et al. The RNA helicase DDX5 promotes viral infection via regulating N6-methyladenosine levels on the DHX58 and NFkappaB transcripts to dampen antiviral innate immunity. Plos Pathog. 2021;17:e1009530.
Not in our library10.1371/journal.ppat.1009530
- 382.
Liu Y, et al. N (6)-methyladenosine RNA modification-mediated cellular metabolism rewiring inhibits viral replication. Science. 2019;365:1171-1176.
Not in our library10.1126/science.aax4468
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Medzhitov R, Horng T. Transcriptional control of the inflammatory response. Nat. Rev. Immunol. 2009;9:692-703.
Not in our library10.1038/nri2634
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Hawiger J, Zienkiewicz J. Decoding inflammation, its causes, genomic responses, and emerging countermeasures. Scand. J. Immunol. 2019;90:e12812.
Not in our library10.1111/sji.12812
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- 386.
Guo G, et al. Disease activity-associated alteration of mRNA m(5) C methylation in CD4(+) T cells of systemic lupus erythematosus. Front Cell Dev. Biol. 2020;8:430.
Not in our library10.3389/fcell.2020.00430
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Liu J, et al. CCR7 chemokine receptor-inducible lnc-Dpf3 restrains dendritic cell migration by inhibiting HIF-1alpha-mediated glycolysis. Immunity. 2019;50:600-615.e615.
Not in our library10.1016/j.immuni.2019.01.021
- 388.
Zheng LB, et al. RNA-m6A modification of HDGF mediated by Mettl3 aggravates the progression of atherosclerosis by regulating macrophages polarization via energy metabolism reprogramming. Biochem. Biophys. Res. Commun. 2022;635:120-127.
Not in our library10.1016/j.bbrc.2022.10.032
- 389.
Pan S, et al. N6-methyladenosine upregulates miR-181d-5p in exosomes derived from cancer-associated fibroblasts to inhibit 5-FU sensitivity by targeting NCALD in colorectal cancer. Int. J. Oncol. 2022;60:14.
Not in our library10.3892/ijo.2022.5304
- 390.
- 391.
Uddin MB, et al. An N(6)-methyladenosine at the transited codon 273 of p53 pre-mRNA promotes the expression of R273H mutant protein and drug resistance of cancer cells. Biochem Pharm. 2019;160:134-145.
Not in our library10.1016/j.bcp.2018.12.014
- 392.
- 393.
Jiang Z, et al. Circular RNA protein tyrosine kinase 2 (circPTK2) promotes colorectal cancer proliferation, migration, invasion and chemoresistance. Bioengineered. 2022;13:810-823.
Not in our library10.1080/21655979.2021.2012952
- 394.
Ye X, et al. Increased m(6)A modification of lncRNA DBH-AS1 suppresses pancreatic cancer growth and gemcitabine resistance via the miR-3163/USP44 axis. Ann. Transl. Med. 2022;10:304.
Not in our library10.21037/atm-22-556
- 395.
Zhang C, et al. m(6)A methyltransferase METTL14-mediated upregulation of cytidine deaminase promoting gemcitabine resistance in pancreatic cancer. Front Oncol. 2021;11:696371.
Not in our library10.3389/fonc.2021.696371
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