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RNA modifications in cellular metabolism: implications for metabolism-targeted therapy and immunotherapy

Wei-Wei Liu, Si-Qing Zheng, Tian Li and 6 more

Signal Transduction and Targeted Therapy · 2024 · Review · CC BY

doi:10.1038/s41392-024-01777-5

Abstract

Cellular metabolism is an intricate network satisfying bioenergetic and biosynthesis requirements of cells. Relevant studies have been constantly making inroads in our understanding of pathophysiology, and inspiring development of therapeutics. As a crucial component of epigenetics at post-transcription level, RNA modification significantly determines RNA fates, further affecting various biological processes and cellular phenotypes. To be noted, immunometabolism defines the metabolic alterations occur on immune cells in different stages and immunological contexts. In this review, we characterize the distribution features, modifying mechanisms and biological functions of 8 RNA modifications, including N6-methyladenosine (m6A), N6,2′-O-dimethyladenosine (m6Am), N1-methyladenosine (m1A), 5-methylcytosine (m5C), N4-acetylcytosine (ac4C), N7-methylguanosine (m7G), Pseudouridine (Ψ), adenosine-to-inosine (A-to-I) editing, which are relatively the most studied types. Then regulatory roles of these RNA modification on metabolism in diverse health and disease contexts are comprehensively described, categorized as glucose, lipid, amino acid, and mitochondrial metabolism. And we highlight the regulation of RNA modifications on immunometabolism, further influencing immune responses. Above all, we provide a thorough discussion about clinical implications of RNA modification in metabolism-targeted therapy and immunotherapy, progression of RNA modification-targeted agents, and its potential in RNA-targeted therapeutics. Eventually, we give legitimate perspectives for future researches in this field from methodological requirements, mechanistic insights, to therapeutic applications.

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    Not in our library10.1021/ja505305z

  129. 129.

    Dominissini D, Rechavi G. 5-methylcytosine mediates nuclear export of mRNA. Cell Res. 2017;27:717-719.

    Not in our library10.1038/cr.2017.73

  130. 130.

    Dai X, et al. YTHDF2 binds to 5-methylcytosine in RNA and modulates the maturation of ribosomal RNA. Anal. Chem. 2020;92:1346-1354.

    Not in our library10.1021/acs.analchem.9b04505

  131. 131.

    Zhang X, et al. The tRNA methyltransferase NSun2 stabilizes p16INK(4) mRNA by methylating the 3′-untranslated region of p16. Nat. Commun. 2012;3:712.

    Not in our library10.1038/ncomms1692

  132. 132.

    Hussain S, et al. NSun2-mediated cytosine-5 methylation of vault noncoding Rna determines its processing into regulatory small RNAs. Cell Rep. 2013;4:255-261.

    Not in our library10.1016/j.celrep.2013.06.029

  133. 133.

    Liu YH, et al. mRNA m5C controls adipogenesis by promoting CDKN1A mRNA export and translation. RNA Biol. 2021;18:711-721.

    Not in our library10.1080/15476286.2021.1980694

  134. 134.

    Arango D, et al. Acetylation of cytidine in mRNA promotes translation efficiency. Cell. 2018;175:1872-1886.e1824.

    Not in our library10.1016/j.cell.2018.10.030

  135. 135.

    Meier J. Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping. J. Biol. Chem. 2023;299:S654-S654.

    Not in our library10.1016/j.jbc.2023.104210

  136. 136.

    Bortolin-Cavaille ML, et al. Probing small ribosomal subunit RNA helix 45 acetylation across eukaryotic evolution. Nucleic Acids Res. 2022;50:6284-6299.

    Not in our library10.1093/nar/gkac404

  137. 137.
  138. 138.
  139. 139.

    Ikeuchi Y, Kitahara K, Suzuki T. The RNA acetyltransferase driven by ATP hydrolysis synthesizes N4-acetylcytidine of tRNA anticodon. EMBO J. 2008;27:2194-2203.

    Not in our library10.1038/emboj.2008.154

  140. 140.

    Sharma S, et al. Yeast Kre33 and human NAT10 are conserved 18S rRNA cytosine acetyltransferases that modify tRNAs assisted by the adaptor Tan1/THUMPD1. Nucleic Acids Res. 2015;43:2242-2258.

    Not in our library10.1093/nar/gkv075

  141. 141.
  142. 142.

    Whipple JM, et al. The yeast rapid tRNA decay pathway primarily monitors the structural integrity of the acceptor and T-stems of mature tRNA. Genes Dev. 2011;25:1173-1184.

    Not in our library10.1101/gad.2050711

  143. 143.

    Dominissini D, Rechavi G. N(4)-acetylation of cytidine in mRNA by NAT10 regulates stability and translation. Cell. 2018;175:1725-1727.

    Not in our library10.1016/j.cell.2018.11.037

  144. 144.

    Arango D, et al. Direct epitranscriptomic regulation of mammalian translation initiation through N4-acetylcytidine. Mol. Cell. 2022;82:2797-2814.e2711.

    Not in our library10.1016/j.molcel.2022.05.016

  145. 145.

    Ramanathan A, Robb GB, Chan SH. mRNA capping: biological functions and applications. Nucleic Acids Res. 2016;44:7511-7526.

    Not in our library10.1093/nar/gkw551

  146. 146.

    Zhang LS, et al. Transcriptome-wide mapping of internal N-7-methylguanosine methylome in mammalian mRNA. Mol. Cell. 2019;74:1304.

    Not in our library10.1016/j.molcel.2019.03.036

  147. 147.

    Alexandrov A, Martzen MR, Phizicky EM. Two proteins that form a complex are required for 7-methylguanosine modification of yeast tRNA. RNA. 2002;8:1253-1266.

    Not in our library10.1017/s1355838202024019

  148. 148.

    Alexandrov A, Grayhack EJ, Phizicky EM. tRNA m(7)G methyltransferase Trm8p/Trm82p: evidence linking activity to a growth phenotype and implicating Trm82p in maintaining levels of active Trm8p. RNA. 2005;11:821-830.

    Not in our library10.1261/rna.2030705

  149. 149.

    Trotman JB, Giltmier AJ, Mukherjee C, Schoenberg DR. RNA guanine-7 methyltransferase catalyzes the methylation of cytoplasmically recapped RNAs. Nucleic Acids Res. 2017;45:10726-10739.

    Not in our library10.1093/nar/gkx801

  150. 150.

    Haag S, Kretschmer J, Bohnsack MT. WBSCR22/Merm1 is required for late nuclear pre-ribosomal RNA processing and mediates N-7-methylation of G1639 in human 18S rRNA. RNA. 2015;21:180-187.

    Not in our library10.1261/rna.047910.114

  151. 151.

    Monecke T, Dickmanns A, Ficner R. Structural basis for m7G-cap hypermethylation of small nuclear, small nucleolar and telomerase RNA by the dimethyltransferase TGS1. Nucleic Acids Res. 2009;37:3865-3877.

    Not in our library10.1093/nar/gkp249

  152. 152.

    Mars JC, Ghram M, Culjkovic-Kraljacic B, Borden KLB. The cap-binding complex CBC and the eukaryotic translation factor eIF4E: co-conspirators in cap-dependent RNA maturation and translation. Cancers. 2021;13:24.

    Not in our library10.3390/cancers13246185

  153. 153.

    Galloway A, et al. Upregulation of RNA cap methyltransferase RNMT drives ribosome biogenesis during T cell activation. Nucleic Acids Res. 2021;49:6722-6738.

    Not in our library10.1093/nar/gkab465

  154. 154.

    Zhang LS, et al. Transcriptome-wide mapping of internal N(7)-methylguanosine methylome in mammalian mRNA. Mol. Cell. 2019;74:1304-1316.e1308.

    Not in our library10.1016/j.molcel.2019.03.036

  155. 155.

    Lin SB, et al. Mettl1/Wdr4-mediated m7G tRNA methylome is required for normal mRNA translation and embryonic stem cell self-renewal and differentiation. Mol. Cell. 2018;71:244.

    Not in our library10.1016/j.molcel.2018.06.001

  156. 156.

    Figaro S, et al. Trm112 is required for Bud23-mediated methylation of the 18S rRNA at position G1575. Mol. Cell Biol. 2012;32:2254-2267.

    Not in our library10.1128/mcb.06623-11

  157. 157.
  158. 158.

    Zhao BS, He C. Pseudouridine in a new era of RNA modifications. Cell Res. 2015;25:153-154.

    Not in our library10.1038/cr.2014.143

  159. 159.

    Karijolich J, Yi CQ, Yu YT. Transcriptome-wide dynamics of RNA pseudouridylation. Nat. Rev. Mol. Cell Biol. 2015;16:581-585.

    Not in our library10.1038/nrm4040

  160. 160.

    Henras A, et al. Accumulation of H/ACA snoRNPs depends on the integrity of the conserved central domain of the RNA-binding protein Nhp2p. Nucleic Acids Res. 2001;29:2733-2746.

    Not in our library10.1093/nar/29.13.2733

  161. 161.

    Penzo M, et al. RNA pseudouridylation in physiology and medicine: for better and for worse. Genes. 2017;8:301.

    Not in our library10.3390/genes8110301

  162. 162.

    Song JH, et al. Differential roles of human PUS10 in miRNA processing and tRNA pseudouridylation. Nat. Chem. Biol. 2020;16:160.

    Not in our library10.1038/s41589-019-0420-5

  163. 163.

    Purchal MK, et al. Pseudouridine synthase 7 is an opportunistic enzyme that binds and modifies substrates with diverse sequences and structures. Proc. Natl Acad. Sci. USA. 2022;119:e2109708119.

    Not in our library10.1073/pnas.2109708119

  164. 164.
  165. 165.
  166. 166.

    Karikó K, et al. Incorporation of pseudouridine Into mRNA yields superior nonimmunogenic vector with increased translational capacity and biological stability. Mol. Ther. 2008;16:1833-1840.

    Not in our library10.1038/mt.2008.200

  167. 167.

    Carlile TM, et al. Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells. Nature. 2014;515:143-146.

    Not in our library10.1038/nature13802

  168. 168.

    King TH, Liu B, McCully RR, Fournier MJ. Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center. Mol. Cell. 2003;11:425-435.

    Not in our library10.1016/s1097-2765(03)00040-6

  169. 169.

    Jack K, et al. rRNA pseudouridylation defects affect ribosomal ligand binding and translational fidelity from yeast to human cells. Mol. Cell. 2011;44:660-666.

    Not in our library10.1016/j.molcel.2011.09.017

  170. 170.

    Zhao X, Yu YT. Pseudouridines in and near the branch site recognition region of U2 snRNA are required for snRNP biogenesis and pre-mRNA splicing in Xenopus oocytes. RNA. 2004;10:681-690.

    Not in our library10.1261/rna.5159504

  171. 171.

    Yang C, McPheeters DS, Yu YT. Psi35 in the branch site recognition region of U2 small nuclear RNA is important for pre-mRNA splicing in Saccharomyces cerevisiae. J. Biol. Chem. 2005;280:6655-6662.

    Not in our library10.1074/jbc.m413288200

  172. 172.
  173. 173.

    Benne R, et al. Major transcript of the frameshifted coxII gene from trypanosome mitochondria contains four nucleotides that are not encoded in the DNA. Cell. 1986;46:819-826.

    Not in our library10.1016/0092-8674(86)90063-2

  174. 174.
  175. 175.

    Decatur WA, Fournier MJ. RNA-guided nucleotide modification of ribosomal and other RNAs. J. Biol. Chem. 2003;278:695-698.

    Not in our library10.1074/jbc.r200023200

  176. 176.

    Choudhury Y, et al. Attenuated adenosine-to-inosine editing of microRNA-376a* promotes invasiveness of glioblastoma cells. J. Clin. Investig. 2012;122:4059-4076.

    Not in our library10.1172/jci62925

  177. 177.

    Wagner RW, Smith JE, Cooperman BS, Nishikura K. A double-stranded RNA unwinding activity introduces structural alterations by means of adenosine to inosine conversions in mammalian cells and Xenopus eggs. Proc. Natl Acad. Sci. USA. 1989;86:2647-2651.

    Not in our library10.1073/pnas.86.8.2647

  178. 178.

    Yang Y, Okada S, Sakurai M. Adenosine-to-inosine RNA editing in neurological development and disease. RNA Biol. 2021;18:999-1013.

    Not in our library10.1080/15476286.2020.1867797

  179. 179.

    Mannion NM, et al. The RNA-editing enzyme ADAR1 controls innate immune responses to RNA. Cell Rep. 2014;9:1482-1494.

    Not in our library10.1016/j.celrep.2014.10.041

  180. 180.
  181. 181.

    Yang WD, et al. Modulation of microRNA processing and expression through RNA editing by ADAR deaminases. Nat. Struct. Mol. Biol. 2006;13:13-21.

    Not in our library10.1038/nsmb1041

  182. 182.

    Nishikura K. Editor meets silencer: crosstalk between RNA editing and RNA interference. Nat. Rev. Mol. Cell Biol. 2006;7:919-931.

    Not in our library10.1038/nrm2061

  183. 183.

    Bass BL. RNA editing by adenosine deaminases that act on RNA. Annu Rev. Biochem. 2002;71:817-846.

    Not in our library10.1146/annurev.biochem.71.110601.135501

  184. 184.

    Bass BL, Weintraub H. A developmentally regulated activity that unwinds RNA duplexes. Cell. 1987;48:607-613.

    Not in our library10.1016/0092-8674(87)90239-x

  185. 185.

    Ryter JM, Schultz SC. Molecular basis of double-stranded RNA-protein interactions: structure of a dsRNA-binding domain complexed with dsRNA. EMBO J. 1998;17:7505-7513.

    Not in our library10.1093/emboj/17.24.7505

  186. 186.

    Chen CX, et al. A third member of the RNA-specific adenosine deaminase gene family, ADAR3, contains both single- and double-stranded RNA binding domains. RNA. 2000;6:755-767.

    Not in our library10.1017/s1355838200000170

  187. 187.

    Nishikura K, et al. Substrate specificity of the dsRNA unwinding/modifying activity. EMBO J. 1991;10:3523-3532.

    Not in our library10.1002/j.1460-2075.1991.tb04916.x

  188. 188.

    Vitali P, et al. ADAR2-mediated editing of RNA substrates in the nucleolus is inhibited by C/D small nucleolar RNAs. J. Cell Biol. 2005;169:745-753.

    Not in our library10.1083/jcb.200411129

  189. 189.

    Farajollahi S, Maas S. Molecular diversity through RNA editing: a balancing act. Trends Genet. 2010;26:221-230.

    Not in our library10.1016/j.tig.2010.02.001

  190. 190.

    Ota H, et al. ADAR1 forms a complex with dicer to promote MicroRNA processing and RNA-induced gene silencing. Cell. 2013;153:575-589.

    Not in our library10.1016/j.cell.2013.03.024

  191. 191.

    Chandel NS. Glycolysis. Cold Spring Harb. Perspect. Biol. 2021;13:5.

    Not in our library10.1101/cshperspect.a040535

  192. 192.

    Warburg O, Wind F, Negelein E. The metabolism of tumors in the body. J. Gen. Physiol. 1927;8:519-530.

    Not in our library10.1085/jgp.8.6.519

  193. 193.
  194. 194.

    Grochowski LL, Xu H, White RH. Ribose-5-phosphate biosynthesis in Methanocaldococcus jannaschii occurs in the absence of a pentose-phosphate pathway. J. Bacteriol. 2005;187:7382-7389.

    Not in our library10.1128/jb.187.21.7382-7389.2005

  195. 195.

    Han HS, et al. Regulation of glucose metabolism from a liver-centric perspective. Exp. Mol. Med. 2016;48:e218.

    Not in our library10.1038/emm.2015.122

  196. 196.

    Sun J, et al. PARP1 is upregulated by hyperglycemia Via N6-methyladenosine modification and promotes diabetic retinopathy. Discov. Med. 2022;34:115-129.

    Not in our library

  197. 197.

    De Jesus DF, et al. m6A mRNA methylation regulates human β-cell biology in physiological states and in type 2 diabetes. Nat. Metab. 2019;1:765-774.

    Not in our library10.1038/s42255-019-0089-9

  198. 198.

    Wang YQ, et al. m6A mRNA methylation controls functional maturation in neonatal murine β-cells. Diabetes. 2020;69:1708-1722.

    Not in our library10.2337/db19-0906

  199. 199.

    Regue L, et al. RNA m6A reader IMP2/IGF2BP2 promotes pancreatic beta-cell proliferation and insulin secretion by enhancing PDX1 expression. Mol. Metab. 2021;48:101209.

    Not in our library10.1016/j.molmet.2021.101209

  200. 200.

    Peng T, et al. LncRNA Airn alleviates diabetic cardiac fibrosis by inhibiting activation of cardiac fibroblasts via a m6A-IMP2-p53 axis. Biol. Direct. 2022;17:32.

    Not in our library10.1186/s13062-022-00346-6

  201. 201.
  202. 202.

    Khoshi A, et al. Association of Omentin rs2274907 and FTO rs9939609 gene polymorphisms with insulin resistance in Iranian individuals with newly diagnosed type 2 diabetes. Lipids Health Dis. 2019;18:142.

    Not in our library10.1186/s12944-019-1085-5

  203. 203.

    Hjort R, et al. Interaction between overweight and genotypes of HLA, TCF7L2, and FTO in relation to the risk of latent autoimmune diabetes in adults and type 2 diabetes. J. Clin. Endocr. Metab. 2019;104:4815-4826.

    Not in our library10.1210/jc.2019-00183

  204. 204.

    Nasser FA, et al. The association of the common fat mass and obesity associated gene polymorphisms with type 2 diabetes in obese Iraqi population. Diabetes Metab. Synd. 2019;13:2451-2455.

    Not in our library10.1016/j.dsx.2019.06.024

  205. 205.

    Yang Y, et al. Glucose is involved in the dynamic regulation of m6a in patients with type 2 diabetes. J. Clin. Endocr. Metab. 2019;104:665-673.

    Not in our library10.1210/jc.2018-00619

  206. 206.

    Peng SM, et al. Identification of entacapone as a chemical inhibitor of FTO mediating metabolic regulation through FOXO1. Sci. Transl. Med. 2019;11:eaau7116.

    Not in our library10.1126/scitranslmed.aau7116

  207. 207.

    Zhou J, et al. Methyladenosine guides mRNA alternative translation during integrated stress response. Mol. Cell. 2018;69:636.

    Not in our library10.1016/j.molcel.2018.01.019

  208. 208.

    Li K, et al. MicroRNA-214 suppresses gluconeogenesis by targeting activating transcriptional factor 4. J. Biol. Chem. 2015;290:8185-8195.

    Not in our library10.1074/jbc.m114.633990

  209. 209.

    Hu F, et al. MiR-495 regulates macrophage M1/M2 polarization and insulin resistance in high-fat diet-fed mice via targeting FTO. Pflug. Arch. 2019;471:1529-1537.

    Not in our library10.1007/s00424-019-02316-w

  210. 210.
  211. 211.
  212. 212.

    Ma L, et al. The essential roles of m(6)A RNA modification to stimulate ENO1-dependent glycolysis and tumorigenesis in lung adenocarcinoma. J. Exp. Clin. Cancer Res. 2022;41:36.

    Not in our library10.1186/s13046-021-02200-5

  213. 213.
  214. 214.

    Chen HR, et al. RNA N-6-methyladenosine methyltransferase METTL3 facilitates colorectal cancer by activating the m(6)A-GLUT1-mTORC1 axis and is a therapeutic target. Gastroenterology. 2021;160:1284.

    Not in our library10.1053/j.gastro.2020.11.013

  215. 215.

    Liu XS, et al. Overexpression of METTL3 associated with the metabolic status on (18)F-FDG PET/CT in patients with Esophageal Carcinoma. J. Cancer. 2020;11:4851-4860.

    Not in our library10.7150/jca.44754

  216. 216.

    Li FJ, et al. Glutamate from nerve cells promotes perineural invasion in pancreatic cancer by regulating tumor glycolysis through HK2 mRNA-m6A modification. Pharmacol. Res. 2023;187:106555.

    Not in our library10.1016/j.phrs.2022.106555

  217. 217.

    Zhang K, et al. N-6-methyladenosine-mediated LDHA induction potentiates chemoresistance of colorectal cancer cells through metabolic reprogramming. Theranostics. 2022;12:4802-4817.

    Not in our library10.7150/thno.73746

  218. 218.
  219. 219.

    Wang Q, et al. METTL3-mediated m(6)A modification of HDGF mRNA promotes gastric cancer progression and has prognostic significance. Gut. 2020;69:1193-1205.

    Not in our library10.1136/gutjnl-2019-319639

  220. 220.

    Zhang Q, et al. METTL3-induced DLGAP1-AS2 promotes non-small cell lung cancer tumorigenesis through m(6)A/c-Myc-dependent aerobic glycolysis. Cell Cycle. 2022;21:2602-2614.

    Not in our library10.1080/15384101.2022.2105885

  221. 221.
  222. 222.

    Yang N, et al. HBXIP drives metabolic reprogramming in hepatocellular carcinoma cells via METTL3-mediated m6A modification of HIF-1alpha. J. Cell Physiol. 2021;236:3863-3880.

    Not in our library10.1002/jcp.30128

  223. 223.

    Xu Y, et al. The N6-methyladenosine METTL3 regulates tumorigenesis and glycolysis by mediating m6A methylation of the tumor suppressor LATS1 in breast cancer. J. Exp. Clin. Cancer Res. 2023;42:10.

    Not in our library10.1186/s13046-022-02581-1

  224. 224.

    Xu W, et al. m6A RNA methylation-mediated NDUFA4 promotes cell proliferation and metabolism in gastric cancer. Cell Death Dis. 2022;13:715.

    Not in our library10.1038/s41419-022-05132-w

  225. 225.

    Cai J, et al. METTL3 promotes glycolysis and cholangiocarcinoma progression by mediating the m6A modification of AKR1B10. Cancer Cell Int. 2022;22:385.

    Not in our library10.1186/s12935-022-02809-2

  226. 226.

    Chen Z, et al. Non-SMC condensin I complex subunit H participates in anti-programmed cell death-1 resistance of clear cell renal cell carcinomas. Cell Prolif. 2023;56:e13400.

    Not in our library10.1111/cpr.13400

  227. 227.

    Xue L, et al. m(6)A transferase METTL3-induced lncRNA ABHD11-AS1 promotes the Warburg effect of non-small-cell lung cancer. J. Cell Physiol. 2021;236:2649-2658.

    Not in our library10.1002/jcp.30023

  228. 228.

    Liu J, Yuan JF, Wang YZ. METTL3-stabilized lncRNA SNHG7 accelerates glycolysis in prostate cancer via SRSF1/c-Myc axis. Exp. Cell Res. 2022;416:113149.

    Not in our library10.1016/j.yexcr.2022.113149

  229. 229.

    Liu ZH, et al. N6-methyladenosine-modified circular RNA QSOX1 promotes colorectal cancer resistance to anti-CTLA-4 therapy through induction of intratumoral regulatory T cells. Drug Resist. Update. 2022;65:100886.

    Not in our library10.1016/j.drup.2022.100886

  230. 230.

    He Y, et al. Linc-UROD stabilizes ENO1 and PKM to strengthen glycolysis, proliferation and migration of pancreatic cancer cells. Transl. Oncol. 2023;27:101583.

    Not in our library10.1016/j.tranon.2022.101583

  231. 231.

    Hou Y, et al. METTL14 modulates glycolysis to inhibit colorectal tumorigenesis in p53-wild-type cells. EMBO Rep. 2023;24:e56325.

    Not in our library10.15252/embr.202256325

  232. 232.

    Du L, et al. USP48 is upregulated by Mettl14 to attenuate hepatocellular carcinoma via regulating SIRT6 stabilization. Cancer Res. 2021;81:3822-3834.

    Not in our library10.1158/0008-5472.can-20-4163

  233. 233.
  234. 234.

    Lin JX, et al. m6A methylation mediates LHPP acetylation as a tumour aerobic glycolysis suppressor to improve the prognosis of gastric cancer. Cell Death Dis. 2022;13:463.

    Not in our library10.1038/s41419-022-04859-w

  235. 235.

    Yu H, et al. N-6-methyladenosine (m(6)A) methyltransferase WTAP accelerates the Warburg effect of gastric cancer through regulating HK2 stability. Biomed. Pharmacother. 2021;133:111075.

    Not in our library10.1016/j.biopha.2020.111075

  236. 236.

    Lyu YY, et al. HIF-1 alpha Regulated WTAP overexpression promoting the Warburg effect of ovarian cancer by m6A-dependent manner. J. Immunol. Res. 2022;2022:6130806.

    Not in our library10.1155/2022/6130806

  237. 237.

    Ou BC, et al. C5aR1-positive neutrophils promote breast cancer glycolysis through WTAP-dependent m6A methylation of ENO1. Cell Death Dis. 2021;12:737.

    Not in our library10.1038/s41419-021-04028-5

  238. 238.

    Zhang Y, et al. WTAP mediates FOXP3 mRNA stability to promote SMARCE1 expression and augment glycolysis in colon adenocarcinoma. Mamm. Genome. 2022;33:654-671.

    Not in our library10.1007/s00335-022-09962-z

  239. 239.

    Li H, Li C, Zhang B, Jiang H. Lactoferrin suppresses the progression of colon cancer under hyperglycemia by targeting WTAP/m(6)A/NT5DC3/HKDC1 axis. J. Transl. Med. 2023;21:156.

    Not in our library10.1186/s12967-023-03983-1

  240. 240.

    Li Y, et al. N(6)-methyladenosine methyltransferase KIAA1429 elevates colorectal cancer aerobic glycolysis via HK2-dependent manner. Bioengineered. 2022;13:11923-11932.

    Not in our library10.1080/21655979.2022.2065952

  241. 241.

    Yang DS, et al. m(6)A transferase KIAA1429-stabilized LINC00958 accelerates gastric cancer aerobic glycolysis through targeting GLUT1. IUBMB Life. 2021;73:1325-1333.

    Not in our library10.1002/iub.2545

  242. 242.

    Yang F, et al. Circ-CTNNB1 drives aerobic glycolysis and osteosarcoma progression via m6A modification through interacting with RBM15. Cell Proliferat. 2023;56:1.

    Not in our library10.1111/cpr.13344

  243. 243.

    Wang QB, et al. ZC3H13 inhibits the progression of hepatocellular carcinoma through m(6)A-PKM2-mediated glycolysis and enhances chemosensitivity. J Oncol. 2021;2021:1328444.

    Not in our library10.1155/2021/1328444

  244. 244.

    Li J, et al. m6A demethylase FTO promotes hepatocellular carcinoma tumorigenesis via mediating PKM2 demethylation. Am. J. Transl. Res. 2019;11:6084-6092.

    Not in our library

  245. 245.

    Li XD, et al. Long noncoding RNA just proximal to X-inactive specific transcript facilitates aerobic glycolysis and temozolomide chemoresistance by promoting stability of PDK1 mRNA in an m6A-dependent manner in glioblastoma multiforme cells. Cancer Sci. 2021;112:4543-4552.

    Not in our library10.1111/cas.15072

  246. 246.

    Yanar S, et al. Proteomics analysis of meclofenamic acid-treated small cell lung carcinoma cells revealed changes in cellular energy metabolism for cancer cell survival. J. Biochem. Mol. Toxic. 2023;37:4.

    Not in our library10.1002/jbt.23289

  247. 247.

    Qing Y, et al. R-2-hydroxyglutarate attenuates aerobic glycolysis in leukemia by targeting the FTO/m(6)A/PFKP/LDHB axis. Mol. Cell. 2021;81:922.

    Not in our library10.1016/j.molcel.2020.12.026

  248. 248.

    Liu Y, et al. Tumors exploit FTO-mediated regulation of glycolytic metabolism to evade immune surveillance. Cell Metab. 2021;33:1221.

    Not in our library10.1016/j.cmet.2021.04.001

  249. 249.

    Liu CY, et al. E6E7 regulates the HK2 expression in cervical cancer via GSK3B/FTO signal. Arch. Biochem. Biophys. 2022;729:109389.

    Not in our library10.1016/j.abb.2022.109389

  250. 250.
  251. 251.
  252. 252.

    Liu Z, Chen Y, Wang L, Ji S. ALKBH5 promotes the proliferation of glioma cells via enhancing the mRNA stability of G6PD. Neurochem. Res. 2021;46:3003-3011.

    Not in our library10.1007/s11064-021-03408-9

  253. 253.

    Liu H, et al. ALKBH5-mediated m6A demethylation of GLUT4 mRNA promotes glycolysis and resistance to HER2-targeted therapy in breast cancer. Cancer Res. 2022;82:3974-3986.

    Not in our library10.1158/0008-5472.can-22-0800

  254. 254.

    Ji X, et al. ALKBH5-induced circular RNA NRIP1 promotes glycolysis in thyroid cancer cells by targeting PKM2. Cancer Sci. 2023;114:2318-2334.

    Not in our library10.1111/cas.15772

  255. 255.

    Zhao L, et al. UBR7 inhibits HCC tumorigenesis by targeting Keap1/Nrf2/Bach1/HK2 and glycolysis. J. Exp. Clin. Cancer Res. 2022;41:330.

    Not in our library10.1186/s13046-022-02528-6

  256. 256.

    Wang YQ, et al. HLA complex P5 upregulation is correlated with poor prognosis and tumor progression in esophageal squamous cell carcinoma. Bioengineered. 2022;13:9301-9311.

    Not in our library10.1080/21655979.2022.2051854

  257. 257.

    Sheng H, et al. YTH domain family 2 promotes lung cancer cell growth by facilitating 6-phosphogluconate dehydrogenase mRNA translation. Carcinogenesis. 2020;41:541-550.

    Not in our library10.1093/carcin/bgz152

  258. 258.

    Chen BX, et al. N6-methyladenosine modification of circ_0003215 suppresses the pentose phosphate pathway and malignancy of colorectal cancer through the miR-663b/DLG4/G6PD axis. Cell Death Dis. 2022;13:804.

    Not in our library10.1038/s41419-022-05245-2

  259. 259.

    Li HY. Downregulation of microRNA-6125 promotes colorectal cancer growth through YTHDF2-dependent recognition of N6-methyladenosine-modified GSK3 beta. Clin. Transl. Med. 2022;12:e1085.

    Not in our library10.1002/ctm2.602

  260. 260.
  261. 261.

    Zhou R, et al. A functional loop between YTH domain family protein YTHDF3 mediated m(6)A modification and phosphofructokinase PFKL in glycolysis of hepatocellular carcinoma. J. Exp. Clin. Cancer Res. 2022;41:334.

    Not in our library10.1186/s13046-022-02538-4

  262. 262.
  263. 263.

    Liu DY, et al. N-6-methyladenosine reader YTHDF3 contributes to the aerobic glycolysis of osteosarcoma through stabilizing PGK1 stability. J. Cancer Res. Clin. 2022;149:4601-4610.

    Not in our library10.1007/s00432-022-04337-y

  264. 264.

    Luo F, Lin K. N-6-methyladenosine (m(6)A) reader IGF2BP1 accelerates gastric cancer aerobic glycolysis in c-Myc-dependent manner. Exp. Cell Res. 2022;417:113176.

    Not in our library10.1016/j.yexcr.2022.113176

  265. 265.

    Yuan B, Zhou J. N6-methyladenosine (m6A) reader IGF2BP1 facilitates clear-cell renal cell carcinoma aerobic glycolysis. PeerJ. 2023;11:e14591.

    Not in our library10.7717/peerj.14591

  266. 266.

    Xu K, Dai XJ, Wu JK, Wen K. N-6-methyladenosine (m(6)A) reader IGF2BP2 stabilizes HK2 stability to accelerate the Warburg effect of oral squamous cell carcinoma progression. J. Cancer Res. Clin. 2022;148:3375-3384.

    Not in our library10.1007/s00432-022-04093-z

  267. 267.
  268. 268.

    Ye Y, et al. lncRNA miR4458HG modulates hepatocellular carcinoma progression by activating m6A-dependent glycolysis and promoting the polarization of tumor-associated macrophages. Cell Mol. Life Sci. 2023;80:99.

    Not in our library10.1007/s00018-023-04741-8

  269. 269.

    Cui YM, et al. m(6)A-modified circFOXK2 targets GLUT1 to accelerate oral squamous cell carcinoma aerobic glycolysis. Cancer Gene Ther. 2023;30:163-171.

    Not in our library10.1038/s41417-022-00526-6

  270. 270.

    Xu TP, et al. LOC101929709 promotes gastric cancer progression by aiding LIN28B to stabilize c-MYC mRNA. Gastr. Cancer. 2023;26:169-186.

    Not in our library10.1007/s10120-022-01348-z

  271. 271.

    Wu YM, et al. RNA m(1)A methylation regulates glycolysis of cancer cells through modulating ATP5D. Proc. Natl Acad. Sci. USA. 2022;119:e2119038119.

    Not in our library10.1073/pnas.2119038119

  272. 272.

    Wang JZ, et al. The role of the HIF-1 alpha/ALYREF/PKM2 axis in glycolysis and tumorigenesis of bladder cancer. Cancer Commun. 2021;41:560-575.

    Not in our library10.1002/cac2.12158

  273. 273.

    Xu FS, et al. N7-methylguanosine regulatory genes well represented by METTL1 define vastly different prognostic, immune and therapy landscapes in adrenocortical carcinoma. Am. J. Cancer Res. 2023;13:538.

    Not in our library

  274. 274.

    Zhang BJ, et al. m6A demethylase FTO attenuates cardiac dysfunction by regulating glucose uptake and glycolysis in mice with pressure overload-induced heart failure. Signal Transduct. Tar. 2021;6:377.

    Not in our library10.1038/s41392-021-00699-w

  275. 275.

    Zhou Y, et al. METTL3 boosts glycolysis and cardiac fibroblast proliferation by increasing AR methylation. Int. J. Biol. Macromol. 2022;223:899-915.

    Not in our library10.1016/j.ijbiomac.2022.11.042

  276. 276.

    Cai W, et al. METTL3-dependent glycolysis regulates dental pulp stem cell differentiation. J. Dent. Res. 2022;101:580-589.

    Not in our library10.1177/00220345211051594

  277. 277.

    Jiao Y, Williams A, Wei N. Quercetin ameliorated insulin resistance via regulating METTL3-mediated N6-methyladenosine modification of PRKD2 mRNA in skeletal muscle and C2C12 myocyte cell line. Nutr. Metab. Cardiovasc. 2022;32:2655-2668.

    Not in our library10.1016/j.numecd.2022.06.019

  278. 278.

    Fahy E, et al. Update of the LIPID MAPS comprehensive classification system for lipids. J. Lipid Res. 2009;50:S9-14,.

    Not in our library10.1194/jlr.r800095-jlr200

  279. 279.

    Ahmed MH, Byrne CD. Modulation of sterol regulatory element binding proteins (SREBPs) as potential treatments for non-alcoholic fatty liver disease (NAFLD). Drug Discov. Today. 2007;12:740-747.

    Not in our library10.1016/j.drudis.2007.07.009

  280. 280.

    Li L, et al. Differential requirement for de novo lipogenesis in cholangiocarcinoma and hepatocellular carcinoma of mice and humans. Hepatology. 2016;63:1900-1913.

    Not in our library10.1002/hep.28508

  281. 281.

    Luo J, Yang H, Song BL. Mechanisms and regulation of cholesterol homeostasis. Nat. Rev. Mol. Cell Biol. 2020;21:225-245.

    Not in our library10.1038/s41580-019-0190-7

  282. 282.
  283. 283.
  284. 284.

    Xie W, et al. METTL3 inhibits hepatic insulin sensitivity via N6-methyladenosine modification of Fasn mRNA and promoting fatty acid metabolism. Biochem. Biophys. Res. Commun. 2019;518:120-126.

    Not in our library10.1016/j.bbrc.2019.08.018

  285. 285.

    Liu Q, et al. ZFP217 regulates adipogenesis by controlling mitotic clonal expansion in a METTL3-m(6)A dependent manner. RNA Biol. 2019;16:1785-1793.

    Not in our library10.1080/15476286.2019.1658508

  286. 286.

    Ningombam SS, et al. Differential distribution and association of FTO gene polymorphism with obesity: a cross-sectional study among two tribal populations of India with East-Asian ancestry. Gene. 2018;647:198-204.

    Not in our library10.1016/j.gene.2018.01.009

  287. 287.

    Hebbar P, et al. Variant rs1421085 associates with increased body weight, soft lean mass, and total body water through interaction with ghrelin and apolipoproteins in Arab population. Front. Genet. 2020;10:1411.

    Not in our library10.3389/fgene.2019.01411

  288. 288.

    Zhao X, et al. FTO-dependent demethylation of N6-methyladenosine regulates mRNA splicing and is required for adipogenesis. Cell Res. 2014;24:1403-1419.

    Not in our library10.1038/cr.2014.151

  289. 289.

    Wu R, et al. FTO regulates adipogenesis by controlling cell cycle progression via m(6)A-YTHDF2 dependent mechanism. Biochim. Biophys. Acta Mol. Cell Biol. Lipids. 2018;1863:1323-1330.

    Not in our library10.1016/j.bbalip.2018.08.008

  290. 290.

    Wu R, et al. Epigallocatechin gallate targets FTO and inhibits adipogenesis in an mRNA m(6)A-YTHDF2-dependent manner. Int. J. Obes. 2018;42:1378-1388.

    Not in our library10.1038/s41366-018-0082-5

  291. 291.

    Song T, et al. Zfp217 mediates m6A mRNA methylation to orchestrate transcriptional and post-transcriptional regulation to promote adipogenic differentiation. Nucleic Acids Res. 2019;47:6130-6144.

    Not in our library10.1093/nar/gkz312

  292. 292.

    Shen GS, et al. The GDF11-FTO-PPARγ axis controls the shift of osteoporotic MSC fate to adipocyte and inhibits bone formation during osteoporosis. BBA-Mol. Basis Dis. 2018;1864:3644-3654.

    Not in our library10.1016/j.bbadis.2018.09.015

  293. 293.

    Kruger N, et al. Loss of endothelial FTO antagonizes obesity-induced metabolic and vascular dysfunction. Circ. Res. 2020;126:232-242.

    Not in our library10.1161/circresaha.119.315531

  294. 294.

    Wu WC, et al. AMPK regulates lipid accumulation in skeletal muscle cells through FTO-dependent demethylation of N6-methyladenosine. Sci. Rep. 2017;7:41606.

    Not in our library10.1038/srep41606

  295. 295.

    Zhou XH, et al. The beneficial effects of betaine on dysfunctional adipose tissue and N6-methyladenosine mRNA methylation requires the AMP-activated protein kinase α1 subunit. J. Nutr. Biochem. 2015;26:1678-1684.

    Not in our library10.1016/j.jnutbio.2015.08.014

  296. 296.

    Jiang Q, et al. promotes adipogenesis in intramuscular preadipocytes an m6A-YTHDF1-dependent mechanism. FASEB J. 2019;33:2971-2981.

    Not in our library10.1096/fj.201801393rrr

  297. 297.

    Liu Q, et al. ZFP217 regulates adipogenesis by controlling mitotic clonal expansion in a METTL3-m6A dependent manner. RNA Biol. 2019;16:1785-1793.

    Not in our library10.1080/15476286.2019.1658508

  298. 298.

    Liu W, et al. ‘Micro-managers’ of hepatic lipid metabolism and NAFLD. Wiley Interdiscip. Rev. Rna. 2015;6:581-593.

    Not in our library10.1002/wrna.1295

  299. 299.

    Yang Y, et al. Dysregulated m6A modification promotes lipogenesis and development of non-alcoholic fatty liver disease and hepatocellular carcinoma. Mol. Ther. 2022;30:2342-2353.

    Not in our library10.1016/j.ymthe.2022.02.021

  300. 300.

    Peng Z, et al. METTL3-m(6)A-Rubicon axis inhibits autophagy in nonalcoholic fatty liver disease. Mol. Ther. 2022;30:932-946.

    Not in our library10.1016/j.ymthe.2021.09.016

  301. 301.

    Chen J, et al. FTO-dependent function of N6-methyladenosine is involved in the hepatoprotective effects of betaine on adolescent mice. J. Physiol. Biochem. 2015;71:405-413.

    Not in our library10.1007/s13105-015-0420-1

  302. 302.

    Guo J, et al. Fat mass and obesity-associated gene enhances oxidative stress and lipogenesis in nonalcoholic fatty liver disease. Dig. Dis. Sci. 2013;58:1004-1009.

    Not in our library10.1007/s10620-012-2516-6

  303. 303.

    Hu Y, et al. GR-mediated FTO transactivation induces lipid accumulation in hepatocytes via demethylation of m(6)A on lipogenic mRNAs. RNA Biol. 2020;17:930-942.

    Not in our library10.1080/15476286.2020.1736868

  304. 304.

    Sun LM, et al. Differential mechanisms regarding triclosan vs. bisphenol A and fluorene-9-bisphenol induced zebrafish lipid-metabolism disorders by RNA-seq. Chemosphere. 2020;251:126318.

    Not in our library10.1016/j.chemosphere.2020.126318

  305. 305.

    Hu Y, et al. GR-mediated FTO transactivation induces lipid accumulation in hepatocytes via demethylation of m6A on lipogenic mRNAs. RNA Biol. 2020;17:930-942.

    Not in our library10.1080/15476286.2020.1736868

  306. 306.

    Li S, et al. Exenatide ameliorates hepatic steatosis and attenuates fat mass and gene expression through PI3K signaling pathway in nonalcoholic fatty liver disease. Braz. J. Med. Biol. Res. 2018;51:e7299.

    Not in our library10.1590/1414-431x20187299

  307. 307.

    Gan X, et al. FTO promotes liver inflammation by suppressing m6A mRNA methylation of IL-17RA. Front. Oncol. 2022;12:989353.

    Not in our library10.3389/fonc.2022.989353

  308. 308.

    Wang HQ, et al. LINC01468 drives NAFLD-HCC progression through CUL4A-linked degradation of SHIP2. Cell Death Discov. 2022;8:499.

    Not in our library10.1038/s41420-022-01234-8

  309. 309.

    Yang JJ, et al. ALKBH5 ameliorated liver fibrosis and suppressed HSCs activation via triggering PTCH1 activation in an m6A dependent manner. Eur. J. Pharmacol. 2022;922:174900.

    Not in our library10.1016/j.ejphar.2022.174900

  310. 310.

    Sun RM, et al. The m6A reader YTHDF3-mediated PRDX3 translation alleviates liver fibrosis. Redox Biol. 2022;54:102378.

    Not in our library10.1016/j.redox.2022.102378

  311. 311.

    Libby P, Ridker PM, Hansson GK. Progress and challenges in translating the biology of atherosclerosis. Nature. 2011;473:317-325.

    Not in our library10.1038/nature10146

  312. 312.

    Back M, et al. Inflammation and its resolution in atherosclerosis: mediators and therapeutic opportunities. Nat. Rev. Cardiol. 2019;16:389-406.

    Not in our library10.1038/s41569-019-0169-2

  313. 313.

    Chen J, et al. Silencing METTL3 stabilizes atherosclerotic plaques by regulating the phenotypic transformation of vascular smooth muscle cells via the miR-375-3p/PDK1 axis. Cardiovasc. Drugs Ther. 2023;37:471-486.

    Not in our library10.1007/s10557-022-07348-6

  314. 314.

    Liu Y, et al. Methyltransferase-like 14 silencing relieves the development of atherosclerosis via m(6)A modification of p65 mRNA. Bioengineered. 2022;13:11832-11843.

    Not in our library10.1080/21655979.2022.2031409

  315. 315.

    Gong C, Fan Y, Liu J. METTL14 mediated m6A modification to LncRNA ZFAS1/ RAB22A: A novel therapeutic target for atherosclerosis. Int. J. Cardiol. 2021;328:177.

    Not in our library10.1016/j.ijcard.2020.12.002

  316. 316.

    Mo C, et al. Fat mass and obesity-associated protein attenuates lipid accumulation in macrophage foam cells and alleviates atherosclerosis in apolipoprotein E-deficient mice. J. Hypertens. 2017;35:810-821.

    Not in our library10.1097/hjh.0000000000001255

  317. 317.

    Yang Z, et al. Critical roles of FTO-mediated mRNA m6A demethylation in regulating adipogenesis and lipid metabolism: implications in lipid metabolic disorders. Genes Dis. 2022;9:51-61.

    Not in our library10.1016/j.gendis.2021.01.005

  318. 318.

    Ladanyi A, et al. Adipocyte-induced CD36 expression drives ovarian cancer progression and metastasis. Oncogene. 2018;37:2285-2301.

    Not in our library10.1038/s41388-017-0093-z

  319. 319.

    Doll S, et al. ACSL4 dictates ferroptosis sensitivity by shaping cellular lipid composition. Nat. Chem. Biol. 2017;13:91-98.

    Not in our library10.1038/nchembio.2239

  320. 320.

    Hisano Y, Hla T. Bioactive lysolipids in cancer and angiogenesis. Pharm. Ther. 2019;193:91-98.

    Not in our library10.1016/j.pharmthera.2018.07.006

  321. 321.

    Liu PH, et al. m(6)A-induced lncDBET promotes the malignant progression of bladder cancer through FABP5-mediated lipid metabolism. Theranostics. 2022;12:6291-6307.

    Not in our library10.7150/thno.71456

  322. 322.

    Zhong X, et al. Circadian clock regulation of hepatic lipid metabolism by modulation of m(6)A mRNA methylation. Cell Rep. 2018;25:1816-1828 e1814.

    Not in our library10.1016/j.celrep.2018.10.068

  323. 323.

    Chen ZJ, et al. N6-methyladenosine-induced ERR. triggers chemoresistance of cancer cells through upregulation of ABCB1 and metabolic reprogramming. Theranostics. 2020;10:3382-3396.

    Not in our library10.7150/thno.40144

  324. 324.

    Peng H, et al. N(6)-methyladenosine (m(6)A) in 18S rRNA promotes fatty acid metabolism and oncogenic transformation. Nat. Metab. 2022;4:1041-1054.

    Not in our library10.1038/s42255-022-00622-9

  325. 325.

    Sun DL, et al. Fat mass and obesity-associated protein regulates lipogenesis via m(6)A modification in fatty acid synthase mRNA. Cell Biol. Int. 2021;45:334-344.

    Not in our library10.1002/cbin.11490

  326. 326.

    Duan XR, et al. m6A demethylase FTO promotes tumor progression via regulation of lipid metabolism in esophageal cancer. Cell Biosci. 2022;12:60.

    Not in our library10.1186/s13578-022-00798-3

  327. 327.

    Zhen L, Pan WY. ALKBH5 inhibits the SIRT3/ACC1 axis to regulate fatty acid metabolism via an m6A-IGF2BP1-dependent manner in cervical squamous cell carcinoma. Clin. Exp. Pharm. Pract. 2023;50:380-392.

    Not in our library10.1111/1440-1681.13754

  328. 328.

    Zhou B, et al. N-6-methyladenosine reader protein YT521-B homology domain-containing 2 suppresses liver steatosis by regulation of mRNA stability of lipogenic genes. Hepatology. 2021;73:91-103.

    Not in our library10.1002/hep.31220

  329. 329.
  330. 330.

    Guo W, et al. M6A methylation of DEGS2, a key ceramide-synthesizing enzyme, is involved in colorectal cancer progression through ceramide synthesis. Oncogene. 2021;40:5913-5924.

    Not in our library10.1038/s41388-021-01987-z

  331. 331.

    Cheng Y, et al. Decoding m(6)A RNA methylome identifies PRMT6-regulated lipid transport promoting AML stem cell maintenance. Cell Stem Cell. 2023;30:69-85 e67.

    Not in our library10.1016/j.stem.2022.12.003

  332. 332.

    Jia YX, et al. Long non-coding RNA NEAT1 mediated RPRD1B stability facilitates fatty acid metabolism and lymph node metastasis via c-Jun/c-Fos/SREBP1 axis in gastric cancer. J. Exp. Clin. Cancer Res. 2022;41:287.

    Not in our library10.1186/s13046-022-02449-4

  333. 333.

    Guo HM, et al. m(6)A Reader HNRNPA2B1 promotes esophageal cancer progression via up-regulation of ACLY and ACC1. Front. Oncol. 2020;10:553045.

    Not in our library10.3389/fonc.2020.553045

  334. 334.

    Liu Y, et al. mRNA m(5)C inhibits adipogenesis and promotes myogenesis by respectively facilitating YBX2 and SMO mRNA export in ALYREF-m(5)C manner. Cell Mol. Life Sci. 2022;79:481.

    Not in our library10.1007/s00018-022-04474-0

  335. 335.

    Yang M, et al. NSUN2 promotes osteosarcoma progression by enhancing the stability of FABP5 mRNA via m(5)C methylation. Cell Death Dis. 2023;14:125.

    Not in our library10.1038/s41419-023-05646-x

  336. 336.

    Xu J, et al. RNA 5-methylcytosine regulators contribute to metabolism heterogeneity and predict prognosis in ovarian cancer. Front. Cell Dev. Biol. 2022;10:807786.

    Not in our library10.3389/fcell.2022.807786

  337. 337.
  338. 338.

    Courtney KD, et al. Isotope tracing of human clear cell renal cell carcinomas demonstrates suppressed glucose oxidation in vivo. Cell Metab. 2018;28:793-800.e792.

    Not in our library10.1016/j.cmet.2018.07.020

  339. 339.
  340. 340.

    Zhang X, et al. The m(6)A methyltransferase METTL3 modifies PGC-1alpha mRNA promoting mitochondrial dysfunction and oxLDL-induced inflammation in monocytes. J. Biol. Chem. 2021;297:101058.

    Not in our library10.1016/j.jbc.2021.101058

  341. 341.
  342. 342.
  343. 343.

    Liu XC, et al. Adenylate kinase 4 modulates the resistance of breast cancer cells to tamoxifen through an m(6)A-based epitranscriptomic mechanism. Mol. Ther. 2020;28:2593-2604.

    Not in our library10.1016/j.ymthe.2020.09.007

  344. 344.

    Hou HY. METTL3 promotes the proliferation and invasion of esophageal cancer cells partly through AKT signaling pathway. Pathol. Res. Pract. 2020;216:153087.

    Not in our library10.1016/j.prp.2020.153087

  345. 345.

    Sun KY, et al. METTL14-dependent maturation of pri-miR-17 regulates mitochondrial homeostasis and induces chemoresistance in colorectal cancer. Cell Death Dis. 2023;14:148.

    Not in our library10.1038/s41419-023-05670-x

  346. 346.

    Deng P, et al. Long-term cadmium exposure impairs cognitive function by activating lnc-Gm10532/m6A/FIS1 axis-mediated mitochondrial fission and dysfunction. Sci. Total Environ. 2023;858:159950.

    Not in our library10.1016/j.scitotenv.2022.159950

  347. 347.

    Du YD, et al. N6-methyladenosine demethylase FTO impairs hepatic ischemia-reperfusion injury via inhibiting Drp1-mediated mitochondrial fragmentation. Cell Death Dis. 2021;12:442.

    Not in our library10.1038/s41419-021-03622-x

  348. 348.

    Li N, et al. Gene characteristics and prognostic values of m(6)A RNA methylation regulators in nonsmall cell lung cancer. J. Health. Eng. 2021;2021:2257066.

    Not in our library10.1155/2021/2257066

  349. 349.

    Wang ZS, et al. Expression and prognostic potential of ribosome 18S RNA m(6)A methyltransferase METTL5 in gastric cancer. Cancer Cell Int. 2021;21:569.

    Not in our library10.1186/s12935-021-02274-3

  350. 350.

    Wang C, et al. Crosstalk of oxidative phosphorylation-related subtypes, establishment of a prognostic signature and immune infiltration characteristics in colorectal adenocarcinoma. Cancers. 2022;14:4503.

    Not in our library10.3390/cancers14184503

  351. 351.

    Yin R, et al. Differential m(6)A RNA landscapes across hematopoiesis reveal a role for IGF2BP2 in preserving hematopoietic stem cell function. Cell Stem Cell. 2022;29:149-159.e147.

    Not in our library10.1016/j.stem.2021.09.014

  352. 352.

    Sun L, et al. RNA-binding protein RALY reprogrammes mitochondrial metabolism via mediating miRNA processing in colorectal cancer. Gut. 2021;70:1698-1712.

    Not in our library10.1136/gutjnl-2020-320652

  353. 353.

    Li GW, Lu XF, Xu QQ, Jin YP. The FDX1 methylation regulatory mechanism in the malignant phenotype of glioma. Genomics. 2023;115:110601.

    Not in our library10.1016/j.ygeno.2023.110601

  354. 354.

    Jia C, et al. HNRNPA2B1-mediated m6A modification of TLR4 mRNA promotes progression of multiple myeloma. J. Transl. Med. 2022;20:537.

    Not in our library10.1186/s12967-022-03750-8

  355. 355.

    Curi R, et al. Molecular mechanisms of glutamine action. J. Cell Physiol. 2005;204:392-401.

    Not in our library10.1002/jcp.20339

  356. 356.
  357. 357.

    Xiao YR, et al. The m(6)A RNA demethylase FTO is a HIF-independent synthetic lethal partner with the VHL tumor suppressor. Proc. Natl Acad. Sci. USA. 2020;117:21441-21449.

    Not in our library10.1073/pnas.2000516117

  358. 358.

    Han ST, et al. Targeting ATF4-dependent pro-survival autophagy to synergize glutaminolysis inhibition. Theranostics. 2021;11:8464-8479.

    Not in our library10.7150/thno.60028

  359. 359.

    Zhou J, et al. N(6)-methyladenosine guides mRNA alternative translation during integrated stress response. Mol. Cell. 2018;69:636-647.e637.

    Not in our library10.1016/j.molcel.2018.01.019

  360. 360.

    Chen P, et al. Targeting YTHDF1 effectively re-sensitizes cisplatin-resistant colon cancer cells by modulating GLS-mediated glutamine metabolism. Mol. Ther.Oncol. 2021;20:228-239.

    Not in our library10.1016/j.omto.2021.01.001

  361. 361.

    Weng HY, et al. The m(6)A reader IGF2BP2 regulates glutamine metabolism and represents a therapeutic target in acute myeloid leukemia. Cancer Cell. 2022;40:1566.

    Not in our library10.1016/j.ccell.2022.10.004

  362. 362.

    Chen T, et al. WZ35 inhibits gastric cancer cell metastasis by depleting glutathione to promote cellular metabolic remodeling. Cancer Lett. 2023;555:216044.

    Not in our library10.1016/j.canlet.2022.216044

  363. 363.

    Han L, et al. METTL16 drives leukemogenesis and leukemia stem cell self-renewal by reprogramming BCAA metabolism. Cell Stem Cell. 2023;30:52.

    Not in our library10.1016/j.stem.2022.12.006

  364. 364.
  365. 365.

    Zhu YY, et al. The E3 ligase VHL promotes follicular helper T cell differentiation via glycolytic-epigenetic control. J. Exp. Med. 2019;216:1664-1681.

    Not in our library10.1084/jem.20190337

  366. 366.

    Chang CH, et al. Metabolic competition in the tumor microenvironment is a driver of cancer progression. Cell. 2015;162:1229-1241.

    Not in our library10.1016/j.cell.2015.08.016

  367. 367.

    Zhu X, Tang H, Yang M, Yin K. N6-methyladenosine in macrophage function: a novel target for metabolic diseases. Trends Endocrinol. Metab. 2023;34:66-84.

    Not in our library10.1016/j.tem.2022.12.006

  368. 368.

    Ning HF, et al. RBM4 regulates M1 macrophages polarization through targeting STAT1-mediated glycolysis. Int. Immunopharmacol. 2020;83:106432.

    Not in our library10.1016/j.intimp.2020.106432

  369. 369.

    Bian Y, et al. Cancer SLC43A2 alters T cell methionine metabolism and histone methylation. Nature. 2020;585:277-282.

    Not in our library10.1038/s41586-020-2682-1

  370. 370.

    Brand A, et al. LDHA-associated lactic acid production blunts tumor immunosurveillance by T and NK cells. Cell Metab. 2016;24:657-671.

    Not in our library10.1016/j.cmet.2016.08.011

  371. 371.

    Reinfeld BI, et al. Cell-programmed nutrient partitioning in the tumour microenvironment. Nature. 2021;593:282.

    Not in our library10.1038/s41586-021-03442-1

  372. 372.

    Gou YL, et al. Ectopic endometriotic stromal cells-derived lactate induces M2 macrophage polarization via Mettl3/Trib1/ERK/STAT3 signalling pathway in endometriosis. Immunology. 2023;168:389-402.

    Not in our library10.1111/imm.13574

  373. 373.

    Zhao W, et al. RNA helicase DDX5 participates in oxLDL-induced macrophage scavenger receptor 1 expression by suppressing mRNA degradation. Exp. Cell Res. 2018;366:114-120.

    Not in our library10.1016/j.yexcr.2018.03.003

  374. 374.
  375. 375.

    Kumagai S, et al. An oncogenic alteration creates a microenvironment that promotes tumor progression by conferring a metabolic advantage to regulatory T cells. Immunity. 2020;53:187.

    Not in our library10.1016/j.immuni.2020.06.016

  376. 376.

    Cao W, et al. Oxidized lipids block antigen cross-presentation by dendritic cells in cancer. J. Immunol. 2014;192:2920-2931.

    Not in our library10.4049/jimmunol.1302801

  377. 377.

    Herber DL, et al. Lipid accumulation and dendritic cell dysfunction in cancer. Nat. Med. 2010;16:880-U857.

    Not in our library10.1038/nm.2172

  378. 378.

    Gokhale NS, Horner SM. RNA modifications go viral. Plos Pathog. 2017;13:e1006188.

    Not in our library10.1371/journal.ppat.1006188

  379. 379.

    Xue MG, et al. Viral RNA N6-methyladenosine modification modulates both innate and adaptive immune responses of human respiratory syncytial virus. PloS Pathog. 2021;17:e1010142.

    Not in our library10.1371/journal.ppat.1010142

  380. 380.

    Rubio RM, et al. RNA m(6) A modification enzymes shape innate responses to DNA by regulating interferon beta. Genes Dev. 2018;32:1472-1484.

    Not in our library10.1101/gad.319475.118

  381. 381.

    Xu J, et al. The RNA helicase DDX5 promotes viral infection via regulating N6-methyladenosine levels on the DHX58 and NFkappaB transcripts to dampen antiviral innate immunity. Plos Pathog. 2021;17:e1009530.

    Not in our library10.1371/journal.ppat.1009530

  382. 382.

    Liu Y, et al. N (6)-methyladenosine RNA modification-mediated cellular metabolism rewiring inhibits viral replication. Science. 2019;365:1171-1176.

    Not in our library10.1126/science.aax4468

  383. 383.

    Medzhitov R, Horng T. Transcriptional control of the inflammatory response. Nat. Rev. Immunol. 2009;9:692-703.

    Not in our library10.1038/nri2634

  384. 384.

    Hawiger J, Zienkiewicz J. Decoding inflammation, its causes, genomic responses, and emerging countermeasures. Scand. J. Immunol. 2019;90:e12812.

    Not in our library10.1111/sji.12812

  385. 385.
  386. 386.

    Guo G, et al. Disease activity-associated alteration of mRNA m(5) C methylation in CD4(+) T cells of systemic lupus erythematosus. Front Cell Dev. Biol. 2020;8:430.

    Not in our library10.3389/fcell.2020.00430

  387. 387.

    Liu J, et al. CCR7 chemokine receptor-inducible lnc-Dpf3 restrains dendritic cell migration by inhibiting HIF-1alpha-mediated glycolysis. Immunity. 2019;50:600-615.e615.

    Not in our library10.1016/j.immuni.2019.01.021

  388. 388.

    Zheng LB, et al. RNA-m6A modification of HDGF mediated by Mettl3 aggravates the progression of atherosclerosis by regulating macrophages polarization via energy metabolism reprogramming. Biochem. Biophys. Res. Commun. 2022;635:120-127.

    Not in our library10.1016/j.bbrc.2022.10.032

  389. 389.

    Pan S, et al. N6-methyladenosine upregulates miR-181d-5p in exosomes derived from cancer-associated fibroblasts to inhibit 5-FU sensitivity by targeting NCALD in colorectal cancer. Int. J. Oncol. 2022;60:14.

    Not in our library10.3892/ijo.2022.5304

  390. 390.
  391. 391.

    Uddin MB, et al. An N(6)-methyladenosine at the transited codon 273 of p53 pre-mRNA promotes the expression of R273H mutant protein and drug resistance of cancer cells. Biochem Pharm. 2019;160:134-145.

    Not in our library10.1016/j.bcp.2018.12.014

  392. 392.
  393. 393.

    Jiang Z, et al. Circular RNA protein tyrosine kinase 2 (circPTK2) promotes colorectal cancer proliferation, migration, invasion and chemoresistance. Bioengineered. 2022;13:810-823.

    Not in our library10.1080/21655979.2021.2012952

  394. 394.

    Ye X, et al. Increased m(6)A modification of lncRNA DBH-AS1 suppresses pancreatic cancer growth and gemcitabine resistance via the miR-3163/USP44 axis. Ann. Transl. Med. 2022;10:304.

    Not in our library10.21037/atm-22-556

  395. 395.

    Zhang C, et al. m(6)A methyltransferase METTL14-mediated upregulation of cytidine deaminase promoting gemcitabine resistance in pancreatic cancer. Front Oncol. 2021;11:696371.

    Not in our library10.3389/fonc.2021.696371

  396. 396.
  397. 397.

    Wang L, et al. m(6) A RNA methyltransferases METTL3/14 regulate immune responses to anti-PD-1 therapy. EMBO J. 2020;39:e104514.

    Not in our library10.15252/embj.2020104514

  398. 398.

    Zheng H, et al. Decreased expression of programmed death ligand-L1 by seven in absentia homolog 2 in cholangiocarcinoma enhances T-cell-mediated antitumor activity. Front Immunol. 2022;13:845193.

    Not in our library10.3389/fimmu.2022.845193

  399. 399.

    Han D, et al. Anti-tumour immunity controlled through mRNA m(6)A methylation and YTHDF1 in dendritic cells. Nature. 2019;566:270-274.

    Not in our library10.1038/s41586-019-0916-x

  400. 400.
  401. 401.

    Mimura K, et al. PD-L1 expression is mainly regulated by interferon gamma associated with JAK-STAT pathway in gastric cancer. Cancer Sci. 2018;109:43-53.

    Not in our library10.1111/cas.13424

  402. 402.

    Su R, et al. Targeting FTO suppresses cancer stem cell maintenance and immune evasion. Cancer Cell. 2020;38:79.

    Not in our library10.1016/j.ccell.2020.04.017

  403. 403.

    Yuan C, et al. Crosstalk of histone and RNA modifications identified a stromal-activated subtype with poor survival and resistance to immunotherapy in gastric cancer. Front. Pharm. 2022;13:868830.

    Not in our library10.3389/fphar.2022.868830

  404. 404.

    Li N, et al. ALKBH5 regulates anti-PD-1 therapy response by modulating lactate and suppressive immune cell accumulation in tumor microenvironment. Proc. Natl Acad. Sci. USA. 2020;117:20159-20170.

    Not in our library10.1073/pnas.1918986117

  405. 405.

    Zhu J, et al. Integrative analysis of m6A RNA methylation regulators and the tumor immune microenvironment in non-small-cell lung cancer. Dis. Mark. 2022;2022:2989200.

    Not in our library10.1155/2022/2989200

  406. 406.

    Ishizuka JJ, et al. Loss of ADAR1 in tumours overcomes resistance to immune checkpoint blockade. Nature. 2019;565:43.

    Not in our library10.1038/s41586-018-0768-9

  407. 407.

    Ma S, et al. The RNA m6A reader YTHDF2 controls NK cell antitumor and antiviral immunity. J. Exp. Med. 2021;218:e20210279.

    Not in our library10.1084/jem.20210279

  408. 408.
  409. 409.

    Chen B, et al. Development of cell-active N6-methyladenosine RNA demethylase FTO inhibitor. J. Am. Chem. Soc. 2012;134:17963-17971.

    Not in our library10.1021/ja3064149

  410. 410.
  411. 411.

    He W, et al. Identification of a novel small-molecule binding site of the fat mass and obesity associated protein (FTO). J. Med. Chem. 2015;58:7341-7348.

    Not in our library10.1021/acs.jmedchem.5b00702

  412. 412.

    Su R, et al. R-2HG exhibits anti-tumor activity by targeting FTO/m(6)A/MYC/CEBPA signaling. Cell. 2018;172:90-105.e123.

    Not in our library10.1016/j.cell.2017.11.031

  413. 413.

    Huang Y, et al. Small-molecule targeting of oncogenic FTO demethylase in acute myeloid leukemia. Cancer Cell. 2019;35:677-691.e610.

    Not in our library10.1016/j.ccell.2019.03.006

  414. 414.

    Xie GY, et al. A novel inhibitor of N-6-methyladenosine demethylase FTO induces mRNA methylation and shows anti-cancer activities. Acta Pharm. Sin. B. 2022;12:853-866.

    Not in our library10.1016/j.apsb.2021.08.028

  415. 415.

    Huff S, et al. Rational design and optimization of m(6)A-RNA demethylase FTO inhibitors as anticancer agents. J. Med. Chem. 2022;65:10920-10937.

    Not in our library10.1021/acs.jmedchem.1c02075

  416. 416.

    Qin B, et al. Discovery of novel mRNA demethylase FTO inhibitors against esophageal cancer. J. Enzym Inhib. Med. Chem. 2022;37:1995-2003.

    Not in our library10.1080/14756366.2022.2098954

  417. 417.
  418. 418.

    Moroz-Omori EV, et al. METTL3 inhibitors for epitranscriptomic modulation of cellular processes. Chemmedchem. 2021;16:3035-3043.

    Not in our library10.1002/cmdc.202100291

  419. 419.

    Dolbois A, et al. 1,4,9-Triazaspiro[5.5]undecan-2-one derivatives as potent and selective METTL3 inhibitors. J. Med. Chem. 2021;64:12738-12760.

    Not in our library10.1021/acs.jmedchem.1c00773

  420. 420.

    Yankova E, et al. Small-molecule inhibition of METTL3 as a strategy against myeloid leukaemia. Nature. 2021;593:597.

    Not in our library10.1038/s41586-021-03536-w

  421. 421.
  422. 422.
  423. 423.

    Parr CJC, et al. N 1-Methylpseudouridine substitution enhances the performance of synthetic mRNA switches in cells. Nucleic Acids Res. 2020;48:e35.

    Not in our library10.1093/nar/gkaa070

  424. 424.

    Shatkin AJ. Capping of eucaryotic mRNAs. Cell. 1976;9:645-653.

    Not in our library10.1016/0092-8674(76)90128-8

  425. 425.

    Yan Y, et al. Non-viral vectors for RNA delivery. J. Control Release. 2022;342:241-279.

    Not in our library10.1016/j.jconrel.2022.01.008

  426. 426.

    Putney SD, Benkovic SJ, Schimmel PR. A DNA fragment with an alpha-phosphorothioate nucleotide at one end is asymmetrically blocked from digestion by exonuclease-iii and can be replicated invivo. Proc. Natl Acad. Sci. Biol. 1981;78:7350-7354.

    Not in our library10.1073/pnas.78.12.7350

  427. 427.

    Sasso JM, et al. The progress and promise of RNA medicine—an arsenal of targeted treatments. J. Med Chem. 2022;65:6975-7015.

    Not in our library10.1021/acs.jmedchem.2c00024

  428. 428.

    Springer AD, Dowdy SF. GalNAc-siRNA conjugates: leading the way for delivery of RNAi therapeutics. Nucleic Acid Ther. 2018;28:109-118.

    Not in our library10.1089/nat.2018.0736

  429. 429.

    Liu WW, Zhang ZY, Wang F, Wang H. Emerging roles of m6A RNA modification in cancer therapeutic resistance. Exp. Hematol. Oncol. 2023;12:21.

    Not in our library10.1186/s40164-023-00386-2

  430. 430.

    Taketo K, et al. The epitranscriptome m(6)A writer METTL3 promotes chemo- and radioresistance in pancreatic cancer cells. Int J. Oncol. 2018;52:621-629.

    Not in our library10.3892/ijo.2017.4219

  431. 431.

    Lai X, et al. Dysregulation of LINC00470 and METTL3 promotes chemoresistance and suppresses autophagy of chronic myelocytic leukaemia cells. J. Cell Mol. Med. 2021;25:4248-4259.

    Not in our library10.1111/jcmm.16478

  432. 432.

    Li X, et al. Fat mass and obesity-associated protein regulates tumorigenesis of arecoline-promoted human oral carcinoma. Cancer Med. 2021;10:6402-6415.

    Not in our library10.1002/cam4.4188

  433. 433.

    Wang X, et al. Fatty acid receptor GPR120 promotes breast cancer chemoresistance by upregulating ABC transporters expression and fatty acid synthesis. EBioMedicine. 2019;40:251-262.

    Not in our library10.1016/j.ebiom.2018.12.037

  434. 434.

    Wang LL, et al. m(6)A RNA methyltransferases METTL3/14 regulate immune responses to anti-PD-1 therapy. EMBO J. 2020;39:e104514.

    Not in our library10.15252/embj.2020104514

  435. 435.

    Chen H, et al. METTL3 inhibits antitumor immunity by targeting m(6)A-BHLHE41-CXCL1/CXCR2 axis to promote colorectal cancer. Gastroenterology. 2022;163:891-907.

    Not in our library10.1053/j.gastro.2022.06.024

  436. 436.

    Tsuruta N, et al. RNA N6-methyladenosine demethylase FTO regulates PD-L1 expression in colon cancer cells. Biochem. Biophys. Res. Commun. 2020;530:235-239.

    Not in our library10.1016/j.bbrc.2020.06.153

  437. 437.

    Wang Y, et al. Antibody-free enzyme-assisted chemical approach for detection of N6-methyladenosine. Nat. Chem. Biol. 2020;16:896.

    Not in our library10.1038/s41589-020-0525-x

  438. 438.

    Molinie B, et al. m(6)A-LAIC-seq reveals the census and complexity of the m(6)A epitranscriptome. Nat. Methods. 2016;13:692.

    Not in our library10.1038/nmeth.3898

  439. 439.

    Zhang Z, et al. Systematic calibration of epitranscriptomic maps using a synthetic modification-free RNA library. Nat. Methods. 2021;18:1213.

    Not in our library10.1038/s41592-021-01280-7

  440. 440.

    Tegowski M, Flamand MN, Meyer KD. scDART-seq reveals distinct m6A signatures and mRNA methylation heterogeneity in single cells. Mol. Cell. 2022;82:868.

    Not in our library10.1016/j.molcel.2021.12.038

  441. 441.

    Xu JN, et al. Abnormal oxidative metabolism in a quiet genomic background underlies clear cell papillary renal cell carcinoma. Elife. 2019;8:e38986.

    Not in our library10.7554/elife.38986

  442. 442.

    Dominissini D, et al. Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq. Nature. 2012;485:201-206.

    Not in our library10.1038/nature11112

  443. 443.

    Linder B, et al. Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome. Nat. Methods. 2015;12:767-772.

    Not in our library10.1038/nmeth.3453

  444. 444.

    Chen K, et al. High-resolution N(6) -methyladenosine (m(6) A) map using photo-crosslinking-assisted m(6) A sequencing. Angew. Chem. Int. Ed. Engl. 2015;54:1587-1590.

    Not in our library10.1002/anie.201410647

  445. 445.

    Zhang Z, et al. Single-base mapping of m(6)A by an antibody-independent method. Sci. Adv. 2019;5:eaax0250.

    Not in our library10.1126/sciadv.aax0250

  446. 446.

    Meyer KD. DART-seq: an antibody-free method for global m(6)A detection. Nat. Methods. 2019;16:1275-1280.

    Not in our library10.1038/s41592-019-0570-0

  447. 447.
  448. 448.

    Wang Y, et al. Antibody-free enzyme-assisted chemical approach for detection of N(6)-methyladenosine. Nat. Chem. Biol. 2020;16:896-903.

    Not in our library10.1038/s41589-020-0525-x

  449. 449.

    Shu X, et al. A metabolic labeling method detects m(6)A transcriptome-wide at single base resolution. Nat. Chem. Biol. 2020;16:887-895.

    Not in our library10.1038/s41589-020-0526-9

  450. 450.

    Li X, et al. Transcriptome-wide mapping reveals reversible and dynamic N(1)-methyladenosine methylome. Nat. Chem. Biol. 2016;12:311-316.

    Not in our library10.1038/nchembio.2040

  451. 451.

    Li X, et al. Base-resolution mapping reveals distinct m(1)A methylome in nuclear- and mitochondrial-encoded transcripts. Mol. Cell. 2017;68:993-1005 e1009.

    Not in our library10.1016/j.molcel.2017.10.019

  452. 452.

    Khoddami V, Cairns BR. Identification of direct targets and modified bases of RNA cytosine methyltransferases. Nat. Biotechnol. 2013;31:458-464.

    Not in our library10.1038/nbt.2566

  453. 453.

    David R, et al. Transcriptome-Wide Mapping of RNA 5-Methylcytosine in Arabidopsis mRNAs and Noncoding RNAs. Plant Cell. 2017;29:445-460.

    Not in our library10.1105/tpc.16.00751

  454. 454.

    Cui X, et al. 5-methylcytosine RNA methylation in arabidopsis thaliana. Mol. Plant. 2017;10:1387-1399.

    Not in our library10.1016/j.molp.2017.09.013

  455. 455.

    Schwartz S, et al. Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA and mRNA. Cell. 2014;159:148-162.

    Not in our library10.1016/j.cell.2014.08.028

  456. 456.

    Li X, et al. Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome. Nat. Chem. Biol. 2015;11:592-597.

    Not in our library10.1038/nchembio.1836

  457. 457.
  458. 458.

    Malbec L, et al. Dynamic methylome of internal mRNA N(7)-methylguanosine and its regulatory role in translation. Cell Res. 2019;29:927-941.

    Not in our library10.1038/s41422-019-0230-z

  459. 459.

    Thalalla Gamage S, Sas-Chen A, Schwartz S, Meier JL. Quantitative nucleotide resolution profiling of RNA cytidine acetylation by ac4C-seq. Nat. Protoc. 2021;16:2286-2307.

    Not in our library10.1038/s41596-021-00501-9

  460. 460.

    Sakurai M, Suzuki T. Biochemical identification of A-to-I RNA editing sites by the inosine chemical erasing (ICE) method. Methods Mol. Biol. 2011;718:89-99.

    Not in our library10.1007/978-1-61779-018-8_5

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