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Autophagy proteins regulate ERK phosphorylation

Nuria Martinez-Lopez, Diana Athonvarangkul, Priti Mishall and 2 more

Nature Communications · 2013

doi:10.1038/ncomms3799

Abstract

Autophagy is a conserved pathway that maintains cellular quality control. Extracellular signal-regulated kinase (ERK) controls various aspects of cell physiology including proliferation. Multiple signalling cascades, including ERK, have been shown to regulate autophagy, however whether autophagy proteins (ATG) regulate cell signalling is unknown. Here we show that growth factor exposure increases the interaction of ERK cascade components with ATG proteins in the cytosol and nucleus. ERK and its upstream kinase MEK localize to the extra-luminal face of autophagosomes. ERK2 interacts with ATG proteins via its substrate-binding domains. Deleting Atg7 or Atg5 or blocking LC3 lipidation or ATG5–ATG12 conjugation decreases ERK phosphorylation. Conversely, increasing LC3-II availability by silencing the cysteine protease ATG4B or acute trehalose exposure increases ERK phosphorylation. Decreased ERK phosphorylation in Atg5 −/− cells does not occur from overactive phosphatases. Our findings thus reveal an unconventional function of ATG proteins as cellular scaffolds in the regulation of ERK phosphorylation.

References 49

  1. 1.

    Shaul Y. D. & Seger R. The MEK/ERK cascade: from signaling specificity to diverse functions. Biochim. Biophys. Acta 1773, 1213–12262007.

    Not in our library10.1016/j.bbamcr.2006.10.005

  2. 2.

    Murphy L. O. & Blenis J. MAPK signal specificity: the right place at the right time. Trends Biochem. Sci. 31, 268–275 (2006 ).

    Not in our library10.1016/j.tibs.2006.03.009

  3. 3.

    Settembre C.. TFEB links autophagy to lysosomal biogenesis. Science 332, 1429–1433 (2011 ).

    Not in our library10.1126/science.1204592

  4. 4.

    Colecchia D.. MAPK15/ERK8 stimulates autophagy by interacting with LC3 and GABARAP proteins. Autophagy 8, 1724–1740 (2012 ).

    Not in our library10.4161/auto.21857

  5. 5.

    Pankiv S.. p62/SQSTM1 binds directly to Atg8/LC3 to facilitate degradation of ubiquitinated protein aggregates by autophagy. J. Biol. Chem. 282, 24131–24145 (2007 ).

    Not in our library10.1074/jbc.m702824200

  6. 6.

    Rodriguez A.. Mature-onset obesity and insulin resistance in mice deficient in the signaling adapter p62. Cell Metab. 3, 211–222 (2006 ).

    Not in our library10.1016/j.cmet.2006.01.011

  7. 7.

    Ravikumar B., Moreau K., Jahreiss L., Puri C. & Rubinsztein D. C. Plasma membrane contributes to the formation of pre-autophagosomal structures. Nat. Cell Biol. 12, 747–757 (2010 ).

    Not in our library10.1038/ncb2078

  8. 8.

    Morrison D. K. & Davis R. J. Regulation of MAP kinase signalling modules by scaffold proteins in mammals. Annu. Rev. Cell Dev. Biol. 19, 91–118 (2003 ).

    Not in our library10.1146/annurev.cellbio.19.111401.091942

  9. 9.

    Karim M. R.. Cytosolic LC3 ratio as a sensitive index of macroautophagy in isolated rat hepatocytes and H4-II-E cells. Autophagy 3, 553–560 (2007 ).

    Not in our library10.4161/auto.4615

  10. 10.

    Duran J. M., Anjard C., Stefan C., Loomis W. F. & Malhotra V. Unconventional secretion of Acb1 is mediated by autophagosomes. J. Cell Biol. 188, 527–536 (2010 ).

    Not in our library10.1083/jcb.200911154

  11. 11.

    Manjithaya R., Anjard C., Loomis W. F. & Subramani S. Unconventional secretion of Pichia pastoris Acb1 is dependent on GRASP protein, peroxisomal functions, and autophagosome formation. J. Cell Biol. 188, 537–546 (2010 ).

    Not in our library10.1083/jcb.200911149

  12. 12.

    Kabeya Y.. LC3, GABARAP and GATE16 localize to autophagosomal membrane depending on form-II formation. J. Cell Sci. 117, 2805–2812 (2004 ).

    Not in our library10.1242/jcs.01131

  13. 13.

    Kumanomidou T.. The crystal structure of human Atg4b, a processing and de-conjugating enzyme for autophagosome-forming modifiers. J. Mol. Biol. 355, 612–618 (2006 ).

    Not in our library10.1016/j.jmb.2005.11.018

  14. 14.

    Sarkar S., Davies J. E., Huang Z., Tunnacliffe A. & Rubinsztein D. C. Trehalose, a novel mTOR-independent autophagy enhancer, accelerates the clearance of mutant huntingtin and alpha-synuclein. J. Biol. Chem. 282, 5641–5652 (2007 ).

    Not in our library10.1074/jbc.m609532200

  15. 15.

    Backer J. M. The regulation and function of Class III PI3Ks: novel roles for Vps34. Biochem. J. 410, 1–17 (2008 ).

    Not in our library10.1042/bj20071427

  16. 16.

    Mauthe M.. Resveratrol-mediated autophagy requires WIPI-1-regulated LC3 lipidation in the absence of induced phagophore formation. Autophagy 7, 1448–1461 (2011 ).

    Not in our library10.4161/auto.7.12.17802

  17. 17.

    Casar B., Pinto A. & Crespo P. Essential role of ERK dimers in the activation of cytoplasmic but not nuclear substrates by ERK-scaffold complexes. Mol. Cell 31, 708–721 (2008 ).

    Not in our library10.1016/j.molcel.2008.07.024

  18. 18.

    Roskoski R. Jr ERK1/2 MAP kinases: structure, function, and regulation. Pharmacol. Res. 66, 105–143 (2012 ).

    Not in our library10.1016/j.phrs.2012.04.005

  19. 19.

    Prusty D., Park B. H., Davis K. E. & Farmer S. R. Activation of MEK/ERK signaling promotes adipogenesis by enhancing peroxisome proliferator-activated receptor gamma (PPARgamma ) and C/EBPalpha gene expression during the differentiation of 3T3-L1 preadipocytes. J. Biol. Chem. 277, 46226–46232 (2002 ).

    Not in our library10.1074/jbc.m207776200

  20. 20.

    Singh R.. Autophagy regulates lipid metabolism. Nature 458, 1131–1135 (2009 ).

    Not in our library10.1038/nature07976

  21. 21.

    Nair U., Thumm M., Klionsky D. J. & Krick R. GFP-Atg8 protease protection as a tool to monitor autophagosome biogenesis. Autophagy 7, 1546–1550 (2011 ).

    Not in our library10.4161/auto.7.12.18424

  22. 22.

    Yoneda Y., Imamoto-Sonobe N., Yamaizumi M. & Uchida T. Reversible inhibition of protein import into the nucleus by wheat germ agglutinin injected into cultured cells. Exp. Cell Res. 173, 586–595 (1987 ).

    Not in our library10.1016/0014-4827(87)90297-7

  23. 23.

    Whitehurst A. W.. ERK2 enters the nucleus by a carrier-independent mechanism. Proc. Natl Acad. Sci. USA 99, 7496–7501 (2002 ).

    Not in our library10.1073/pnas.112495999

  24. 24.

    Czaja M. J., Liu H. & Wang Y. Oxidant-induced hepatocyte injury from menadione is regulated by ERK and AP-1 signaling. Hepatology 37, 1405–1413 (2003 ).

    Not in our library10.1053/jhep.2003.50233

  25. 25.

    Bennett B. L.. SP600125, an anthrapyrazolone inhibitor of Jun N-terminal kinase. Proc. Natl Acad. Sci. USA 98, 13681–13686 (2001 ).

    Not in our library10.1073/pnas.251194298

  26. 26.

    Khokhlatchev A. V.. Phosphorylation of the MAP kinase ERK2 promotes its homodimerization and nuclear translocation. Cell 93, 605–615 (1998 ).

    Not in our library10.1016/s0092-8674(00)81189-7

  27. 27.

    Tanida I.. Consideration about negative controls for LC3 and expression vectors for four colored fluorescent protein-LC3 negative controls. Autophagy 4, 131–134 (2008 ).

    Not in our library10.4161/auto.5233

  28. 28.

    Florkowska M.. EGF activates TTP expression by activation of ELK-1 and EGR-1 transcription factors. BMC Mol. Biol. 13, 8 (2012 ).

    Not in our library10.1186/1471-2199-13-8

  29. 29.

    Settembre C.. A lysosome-to-nucleus signalling mechanism senses and regulates the lysosome via mTOR and TFEB. EMBO J. 31, 1095–1108 (2012 ).

    Not in our library10.1038/emboj.2012.32

  30. 30.

    Tanida I., Tanida-Miyake E., Ueno T. & Kominami E. The human homolog of Saccharomyces cerevisiae Apg7p is a Protein-activating enzyme for multiple substrates including human Apg12p, GATE-16, GABARAP, and MAP-LC3. J. Biol. Chem. 276, 1701–1706 (2001 ).

    Not in our library10.1074/jbc.c000752200

  31. 31.

    Burkhard K. A., Chen F. & Shapiro P. Quantitative analysis of ERK2 interactions with substrate proteins: roles for kinase docking domains and activity in determining binding affinity. J. Biol. Chem. 286, 2477–2485 (2011 ).

    Not in our library10.1074/jbc.m110.177899

  32. 32.

    Dimitri C. A., Dowdle W., MacKeigan J. P., Blenis J. & Murphy L. O. Spatially separate docking sites on ERK2 regulate distinct signaling events in vivo. Curr. Biol. 15, 1319–1324 (2005 ).

    Not in our library10.1016/j.cub.2005.06.037

  33. 33.

    Fantz D. A., Jacobs D., Glossip D. & Kornfeld K. Docking sites on substrate proteins direct extracellular signal-regulated kinase to phosphorylate specific residues. J. Biol. Chem. 276, 27256–27265 (2001 ).

    Not in our library10.1074/jbc.m102512200

  34. 34.

    Jacobs D., Glossip D., Xing H., Muslin A. J. & Kornfeld K. Multiple docking sites on substrate proteins form a modular system that mediates recognition by ERK MAP kinase. Genes Dev. 13, 163–175 (1999 ).

    Not in our library

  35. 35.

    Hamacher-Brady A.. Response to myocardial ischemia/reperfusion injury involves Bnip3 and autophagy. Cell Death. Differ. 14, 146–157 (2007 ).

    Not in our library10.1038/sj.cdd.4401936

  36. 36.

    Satoo K.. The structure of Atg4B-LC3 complex reveals the mechanism of LC3 processing and delipidation during autophagy. EMBO J. 28, 1341–1350 (2009 ).

    Not in our library10.1038/emboj.2009.80

  37. 37.

    Marino G.. Autophagy is essential for mouse sense of balance. J. Clin. Invest. 120, 2331–2344 (2010 ).

    Not in our library10.1172/jci42601

  38. 38.

    Wang Y.. Loss of macroautophagy promotes or prevents fibroblast apoptosis depending on the death stimulus. J. Biol. Chem. 283, 4766–4777 (2008 ).

    Not in our library10.1074/jbc.m706666200

  39. 39.

    Cuervo A. M. Autophagy and aging: keeping that old broom working. Trends Genet. 24, 604–612 (2008 ).

    Not in our library10.1016/j.tig.2008.10.002

  40. 40.

    Kaushik S.. Loss of autophagy in hypothalamic POMC neurons impairs lipolysis. EMBO Rep. 13, 258–265 (2012 ).

    Not in our library10.1038/embor.2011.260

  41. 41.

    Singh R.. Autophagy regulates adipose mass and differentiation in mice. J. Clin. Invest. 119, 3329–3339 (2009 ).

    Not in our library10.1172/jci39228

  42. 42.

    Martinez-Lopez N.. Autophagy in Myf5+ progenitors regulates energy and glucose homeostasis through control of brown fat and skeletal muscle development. EMBO Rep. 14, 795–803 (2013 ).

    Not in our library10.1038/embor.2013.111

  43. 43.

    Shimizu S.. Inhibition of autophagy potentiates the antitumor effect of the multikinase inhibitor sorafenib in hepatocellular carcinoma. Int. J. Cancer 131, 548–557 (2012 ).

    Not in our library10.1002/ijc.26374

  44. 44.

    Komatsu M.. Impairment of starvation-induced and constitutive autophagy in Atg7-deficient mice. J. Cell Biol. 169, 425–434 (2005 ).

    Not in our library10.1083/jcb.200412022

  45. 45.

    Mizushima N.. Dissection of autophagosome formation using Apg5-deficient mouse embryonic stem cells. J. Cell Biol. 152, 657–668 (2001 ).

    Not in our library10.1083/jcb.152.4.657

  46. 46.

    Cuervo A. M., Palmer A., Rivett A. J. & Knecht E. Degradation of proteasomes by lysosomes in rat liver. Eur. J. Biochem. 227, 792–800 (1995 ).

    Not in our library10.1111/j.1432-1033.1995.tb20203.x

  47. 47.

    Marzella L., Ahlberg J. & Glaumann H. Isolation of autophagic vacuoles from rat liver: morphological and biochemical characterization. J. Cell Biol. 93, 144–154 (1982 ).

    Not in our library10.1083/jcb.93.1.144

  48. 48.

    Dunn W. A. Jr Studies on the mechanisms of autophagy: maturation of the autophagic vacuole. J. Cell Biol. 110, 1935–1945 (1990 ).

    Not in our library10.1083/jcb.110.6.1935

  49. 49.

    Lee S. M., Vasishtha M. & Prywes R. Activation and repression of cellular immediate early genes by serum response factor cofactors. J. Biol. Chem. 285, 22036–22049 (2010 ).

    Not in our library10.1074/jbc.m110.108878

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