aMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain data

Anatomical segmentation of high-resolution 3D microscopy datasets is necessary to map large samples at cellular resolution. Here the authors present a pipeline for automated mouse atlas propagation (aMAP) to segment fluorescence images of the adult mouse brain and validate it against human segmentations.

Abstract licence: CC BY-NC-ND

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34 more references, whose wording the paper’s licence keeps private.

• Enhanced and unified anatomical labeling for a common mouse brain atlas · 2019

• Spatial registration of serial microscopic brain images to three-dimensional reference atlases with the QuickNII tool · 2019

• A Circuit for Integration of Head- and Visual-Motion Signals in Layer 6 of Mouse Primary Visual Cortex · 2018

• Challenges and opportunities for large-scale electrophysiology with Neuropixels probes · 2018

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