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Bacterial evolution of antibiotic hypersensitivity
Viktória Lázár, Gajinder Pal Singh, Réka Spohn and 13 more
Molecular Systems Biology · 2013 · CC BY-NC-SA
Abstract
The evolution of resistance to a single antibiotic is frequently accompanied by increased resistance to multiple other antimicrobial agents. In sharp contrast, very little is known about the frequency and mechanisms underlying collateral sensitivity. In this case, genetic adaptation under antibiotic stress yields enhanced sensitivity to other antibiotics. Using large-scale laboratory evolutionary experiments with Escherichia coli, we demonstrate that collateral sensitivity occurs frequently during the evolution of antibiotic resistance. Specifically, populations adapted to aminoglycosides have an especially low fitness in the presence of several other antibiotics. Whole-genome sequencing of laboratory-evolved strains revealed multiple mechanisms underlying aminoglycoside resistance, including a reduction in the proton-motive force (PMF) across the inner membrane. We propose that as a side effect, these mutations diminish the activity of PMF-dependent major efflux pumps (including the AcrAB transporter), leading to hypersensitivity to several other antibiotics. More generally, our work offers an insight into the mechanisms that drive the evolution of negative trade-offs under antibiotic selection.
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References 45
- 1.
Alekshun MN, Levy SB (2007 ) Molecular mechanisms of antibacterial multidrug resistance. Cell 128: 1037–1050
Not in our library10.1016/j.cell.2007.03.004
- 2.
Allison KR, Brynildsen MP, Collins JJ (2011 ) Metabolite-enabled eradication of bacterial persisters by aminoglycosides. Nature 473: 216–220
Not in our library10.1038/nature10069
- 3.
Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006 ) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2: 2006.0008
Not in our library10.1038/msb4100050
- 4.
Baquero F (2001 ) Low-level antibacterial resistance: a gateway to clinical resistance. Drug Resist Updat 4: 93–105
Not in our library10.1054/drup.2001.0196
- 5.
Bonhoeffer S, Lipsitch M, Levin BR (1997 ) Evaluating treatment protocols to prevent antibiotic resistance. Proc Natl Acad Sci USA 94: 12106–12111
Not in our library10.1073/pnas.94.22.12106
- 6.
Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, Lewis S (2009 ) AmiGO: online access to ontology and annotation data. Bioinformatics 25: 288–289
Not in our library10.1093/bioinformatics/btn615
- 7.
Castaneda-Garcia A, Do TT, Blazquez J (2011 ) The K+ uptake regulator TrkA controls membrane potential, pH homeostasis and multidrug susceptibility in Mycobacterium smegmatis. J Antimicrob Chemother 66: 1489–1498
Not in our library10.1093/jac/dkr165
- 8.
Chait R, Craney A, Kishony R (2007 ) Antibiotic interactions that select against resistance. Nature 446: 668–671
Not in our library10.1038/nature05685
- 9.
Coldham NG, Webber M, Woodward MJ, Piddock LJ (2010 ) A 96-well plate fluorescence assay for assessment of cellular permeability and active efflux in Salmonella enterica serovar Typhimurium and Escherichia coli. J Antimicrob Chemother 65: 1655–1663
Not in our library10.1093/jac/dkq169
- 10.
Curtiss R 3rd, Charamella LJ, Berg CM, Harris PE (1965 ) Kinetic and genetic analyses of D-cycloserine inhibition and resistance in Escherichia coli. J Bacteriol 90: 1238–1250
Not in our library10.1128/jb.90.5.1238-1250.1965
- 11.
Efron B, Tibshirani R (1994 ) An Introduction to the Bootstrap Chapman & Hall, New York
Not in our library
- 12.
Elkins CA, Nikaido H (2002 ) Substrate specificity of the RND-type multidrug efflux pumps AcrB and AcrD of Escherichia coli is determined predominantly by two large periplasmic loops. J Bacteriol 184: 6490–6498
Not in our library10.1128/jb.184.23.6490-6498.2002
- 13.
Feher T, Karcagi I, Gyorfy Z, Umenhoffer K, Csorgo B, Posfai G (2008 ) Scarless engineering of the Escherichia coli genome. Methods Mol Biol 416: 251–259
Not in our library10.1007/978-1-59745-321-9_16
- 14.
Floratos A, Smith K, Ji Z, Watkinson J, Califano A (2010 ) geWorkbench: an open source platform for integrative genomics. Bioinformatics 26: 1779–1780
Not in our library10.1093/bioinformatics/btq282
- 15.
- 16.
Goldstein F (2007 ) The potential clinical impact of low-level antibiotic resistance in Staphylococcus aureus. J Antimicrob Chemother 59: 1–4
Not in our library10.1093/jac/dkl429
- 17.
- 18.
Hegreness M, Shoresh N, Damian D, Hartl D, Kishony R (2008 ) Accelerated evolution of resistance in multidrug environments. Proc Natl Acad Sci USA 105: 13977–13981
Not in our library10.1073/pnas.0805965105
- 19.
Kohanski MA, DePristo MA, Collins JJ (2010a ) Sublethal antibiotic treatment leads to multidrug resistance via radical-induced mutagenesis. Mol Cell 37: 311–320
Not in our library10.1016/j.molcel.2010.01.003
- 20.
Kohanski MA, Dwyer DJ, Collins JJ (2010b ) How antibiotics kill bacteria: from targets to networks. Nat Rev Microbiol 8: 423–435
Not in our library10.1038/nrmicro2333
- 21.
Kohanski MA, Dwyer DJ, Wierzbowski J, Cottarel G, Collins JJ (2008 ) Mistranslation of membrane proteins and two-component system activation trigger antibiotic-mediated cell death. Cell 135: 679–690
Not in our library10.1016/j.cell.2008.09.038
- 22.
Liu A, Tran L, Becket E, Lee K, Chinn L, Park E, Tran K, Miller JH (2010 ) Antibiotic sensitivity profiles determined with an Escherichia coli gene knockout collection: generating an antibiotic bar code. Antimicrob Agents Chemother 54: 1393–1403
Not in our library10.1128/aac.00906-09
- 23.
Macvanin M, Hughes D (2005 ) Hyper-susceptibility of a fusidic acid-resistant mutant of Salmonella to different classes of antibiotics. FEMS Microbiol Lett 15: 215–220
Not in our library10.1016/j.femsle.2005.05.007
- 24.
Miller JH (1972 ) Experiments in Molecular Genetics. Cold Spring Harbor Press, Cold Spring Harbor, NY, USA
Not in our library
- 25.
Mine T, Morita Y, Kataoka A, Mizushima T, Tsuchiya T (1999 ) Expression in Escherichia coli of a new multidrug efflux pump, MexXY, from Pseudomonas aeruginosa. Antimicrob Agents Chemother 43: 415–417
Not in our library10.1128/aac.43.2.415
- 26.
Moore RA, Hancock RE (1986 ) Involvement of outer membrane of Pseudomonas cepacia in aminoglycoside and polymyxin resistance. Antimicrob Agents Chemother 30: 923–926
Not in our library10.1128/aac.30.6.923
- 27.
Nichols RJ, Sen S, Choo YJ, Beltrao P, Zietek M, Chaba R, Lee S, Kazmierczak KM, Lee KJ, Wong A, Shales M, Lovett S, Winkler ME, Krogan NJ, Typas A, Gross CA (2011 ) Phenotypic landscape of a bacterial cell. Cell 144: 143–156
Not in our library10.1016/j.cell.2010.11.052
- 28.
Nishino K, Yamaguchi A (2001 ) Analysis of a complete library of putative drug transporter genes in Escherichia coli. J Bacteriol 183: 5803–5812
Not in our library10.1128/jb.183.20.5803-5812.2001
- 29.
Norman A, Hansen LH, She Q, Sorensen SJ (2008 ) Nucleotide sequence of pOLA52: a conjugative IncX1 plasmid from Escherichia coli which enables biofilm formation and multidrug efflux. Plasmid 60: 59–74
Not in our library10.1016/j.plasmid.2008.03.003
- 30.
Novo DJ, Perlmutter NG, Hunt RH, Shapiro HM (2000 ) Multiparameter flow cytometric analysis of antibiotic effects on membrane potential, membrane permeability, and bacterial counts of Staphylococcus aureus and Micrococcus luteus. Antimicrob Agents Chemother 44: 827–834
Not in our library10.1128/aac.44.4.827-834.2000
- 31.
Okusu H, Ma D, Nikaido H (1996 ) AcrAB efflux pump plays a major role in the antibiotic resistance phenotype of Escherichia coli multiple-antibiotic-resistance (Mar) mutants. J Bacteriol 178: 306–308
Not in our library10.1128/jb.178.1.306-308.1996
- 32.
Ondov BD, Cochran C, Landers M, Meredith GD, Dudas M, Bergman NH (2010 ) An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System. Bioinformatics 26: 1901–1902
Not in our library10.1093/bioinformatics/btq291
- 33.
Orlen H, Hughes D (2006 ) Weak mutators can drive the evolution of fluoroquinolone resistance in Escherichia coli. Antimicrob Agents Chemother 50: 3454–3456
Not in our library10.1128/aac.00783-06
- 34.
Palmer AC, Kishony R (2013 ) Understanding, predicting and manipulating the genotypic evolution of antibiotic resistance. Nat Rev Genet 14: 243–248
Not in our library10.1038/nrg3351
- 35.
Paulsen IT, Brown MH, Skurray RA (1996 ) Proton-dependent multidrug efflux systems. Microbiol Rev 60: 575–608
Not in our library10.1128/mr.60.4.575-608.1996
- 36.
- 37.
Piddock LJ (2006 ) Multidrug-resistance efflux pumps—not just for resistance. Nat Rev Microbiol 4: 629–636
Not in our library10.1038/nrmicro1464
- 38.
Pranting M, Andersson DI (2010 ) Mechanisms and physiological effects of protamine resistance in Salmonella enterica serovar Typhimurium LT2. J Antimicrob Chemother 65: 876–887
Not in our library10.1093/jac/dkq059
- 39.
Proctor RA, von Eiff C, Kahl BC, Becker K, McNamara P, Herrmann M, Peters G (2006 ) Small colony variants: a pathogenic form of bacteria that facilitates persistent and recurrent infections. Nat Rev Microbiol 4: 295–305
Not in our library10.1038/nrmicro1384
- 40.
Szybalski W, Bryson V (1952 ) Genetic studies on microbial cross resistance to toxic agents. I. Cross resistance of Escherichia coli to fifteen antibiotics. J Bacteriol 64: 489–499
Not in our library10.1128/jb.64.4.489-499.1952
Cited by papers we hold 8
- Pervasive and diverse collateral sensitivity profiles inform optimal strategies to limit antibiotic resistance · 2019No notice
- Integrated evolutionary analysis reveals antimicrobial peptides with limited resistance · 2019No notice
- Antibiotic collateral sensitivity is contingent on the repeatability of evolution · 2019No notice
- Conserved collateral antibiotic susceptibility networks in diverse clinical strains of Escherichia coli · 2018Not checked
- Evolution of high-level resistance during low-level antibiotic exposure · 2018No notice
- Metabolic constraints on the evolution of antibiotic resistance · 2017No notice
- Genome-wide analysis captures the determinants of the antibiotic cross-resistance interaction network · 2014No notice
- Prediction of antibiotic resistance by gene expression profiles · 2014No notice
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