Skip to content
naulon

No retraction, correction or concern found when last checked on Oct 22, 2026.

Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing

Carman Man-Chung Li, Hana Shapiro, Christina Tsiobikas and 12 more

Cell Reports · 2020 · CC BY

doi:10.1016/j.celrep.2020.108566

Abstract

Aging is closely associated with increased susceptibility to breast cancer, yet there have been limited systematic studies of aging-induced alterations in the mammary gland. Here, we leverage high-throughput single-cell RNA sequencing to generate a detailed transcriptomic atlas of young and aged murine mammary tissues. By analyzing epithelial, stromal, and immune cells, we identify age-dependent alterations in cell proportions and gene expression, providing evidence that suggests alveolar maturation and physiological decline. The analysis also uncovers potential pro-tumorigenic mechanisms coupled to the age-associated loss of tumor suppressor function and change in microenvironment. In addition, we identify a rare, age-dependent luminal population co-expressing hormone-sensing and secretory-alveolar lineage markers, as well as two macrophage populations expressing distinct gene signatures, underscoring the complex heterogeneity of the mammary epithelia and stroma. Collectively, this rich single-cell atlas reveals the effects of aging on mammary physiology and can serve as a useful resource for understanding aging-associated cancer risk.

References 155

  1. 1.

    Ace CI, and Okulicz WC (1998 ). A progesterone-induced endometrial homolog of a new candidate tumor suppressor, DMBT1. J. Clin. Endocrinol. Metab 83, 3569–3573.

    Not in our library10.1210/jcem.83.10.5150

  2. 2.

    Adriance MC, Inman JL, Petersen OW, and Bissell MJ (2005 ). Myoepithelial cells: good fences make good neighbors. Breast Cancer Res. 7, 190–197.

    Not in our library10.1186/bcr1286

  3. 3.

    Agarwal AK, Tunison K, Dalal JS, Nagamma SS, Hamra FK, Sankella S, Shao X, Auchus RJ, and Garg A (2017 ). Metabolic, Reproductive, and Neurologic Abnormalities in Agpat1-Null Mice. Endocrinology 158, 3954–3973.

    Not in our library10.1210/en.2017-00511

  4. 4.
  5. 5.

    Azam S, Sjölander A, Eriksson M, Gabrielson M, Czene K, and Hall P (2019 ). Determinants of mammographic density change. JNCI Cancer Spectr 3, pkz004.

    Not in our library10.1093/jncics/pkz004

  6. 6.
  7. 7.

    Bazzoni G, and Dejana E (2004 ). Endothelial cell-to-cell junctions: molecular organization and role in vascular homeostasis. Physiol. Rev 84, 869–901.

    Not in our library10.1152/physrev.00035.2003

  8. 8.

    Bjørge L, Jensen TS, Kristoffersen EK, Ulstein M, and Matre R (1996 ). Identification of the complement regulatory protein CD59 in human colostrum and milk. Am. J. Reprod. Immunol 35, 43–50.

    Not in our library10.1111/j.1600-0897.1996.tb00007.x

  9. 9.

    Blencowe BJ, Issner R, Nickerson JA, and Sharp PA (1998 ). A coactivator of pre-mRNA splicing. Genes Dev. 12, 996–1009.

    Not in our library10.1101/gad.12.7.996

  10. 10.

    Booth BW, Boulanger CA, and Smith GH (2007 ). Alveolar progenitor cells develop in mouse mammary glands independent of pregnancy and lactation. J. Cell. Physiol 212, 729–736.

    Not in our library10.1002/jcp.21071

  11. 11.

    Brady NJ, Chuntova P, and Schwertfeger KL (2016 ). Macrophages: regulators of the inflammatory microenvironment during mammary gland development and breast cancer. Mediators Inflamm. 2016, 4549676.

    Not in our library10.1155/2016/4549676

  12. 12.

    Brisken C, and Ataca D (2015 ). Endocrine hormones and local signals during the development of the mouse mammary gland. Wiley Interdiscip. Rev. Dev. Biol 4, 181–195.

    Not in our library10.1002/wdev.172

  13. 13.

    Bronte V, and Zanovello P (2005 ). Regulation of immune responses by L-arginine metabolism. Nat. Rev. Immunol 5, 641–654.

    Not in our library10.1038/nri1668

  14. 14.

    Burchfield JS, Li Q, Wang HY, and Wang R-F (2015 ). JMJD3 as an epigenetic regulator in development and disease. Int. J. Biochem. Cell Biol 67, 148–157.

    Not in our library10.1016/j.biocel.2015.07.006

  15. 15.

    Butler A, Hoffman P, Smibert P, Papalexi E, and Satija R (2018 ). Integrating single-cell transcriptomic data across different conditions, technologies, and species. Nat. Biotechnol 36, 411–420.

    Not in our library10.1038/nbt.4096

  16. 16.

    Cella M, Döhring C, Samaridis J, Dessing M, Brockhaus M, Lanzavecchia A, and Colonna M (1997 ). A novel inhibitory receptor (ILT3) expressed on monocytes, macrophages, and dendritic cells involved in antigen processing. J. Exp. Med 185, 1743–1751.

    Not in our library10.1084/jem.185.10.1743

  17. 17.
  18. 18.

    Clarke RB, Howell A, Potten CS, and Anderson E (1997 ). Dissociation between steroid receptor expression and cell proliferation in the human breast. Cancer Res. 57, 4987–4991.

    Not in our library

  19. 19.

    Cohen B, Shimizu M, Izrailit J, Ng NFL, Buchman Y, Pan JG, Dering J, and Reedijk M (2010 ). Cyclin D1 is a direct target of JAG1-mediated Notch signaling in breast cancer. Breast Cancer Res. Treat 123, 113–124.

    Not in our library10.1007/s10549-009-0621-9

  20. 20.

    Crisà A, Ferrè F, Chillemi G, and Moioli B (2016 ). RNA-sequencing for profiling goat milk transcriptome in colostrum and mature milk. BMC Vet. Res 12, 264.

    Not in our library10.1186/s12917-016-0881-7

  21. 21.

    Dawson CA, Pal B, Vaillant F, Gandolfo LC, Liu Z, Bleriot C, Ginhoux F, Smyth GK, Lindeman GJ, Mueller SN, (2020 ). Tissue-resident ductal macrophages survey the mammary epithelium and facilitate tissue re-modelling. Nat. Cell Biol 22, 546–558.

    Not in our library10.1038/s41556-020-0505-0

  22. 22.

    Deng M, Gui X, Kim J, Xie L, Chen W, Li Z, He L, Chen Y, Chen H, Luo W, (2018 ). LILRB4 signalling in leukaemia cells mediates T cell suppression and tumour infiltration. Nature 562, 605–609.

    Not in our library10.1038/s41586-018-0615-z

  23. 23.

    Denissov S, Hofemeister H, Marks H, Kranz A, Ciotta G, Singh S, Anastassiadis K, Stunnenberg HG, and Stewart AF (2014 ). Mll2 is required for H3K4 trimethylation on bivalent promoters in embryonic stem cells, whereas Mll1 is redundant. Development 141, 526–537.

    Not in our library10.1242/dev.102681

  24. 24.

    Desai TJ, Brownfield DG, and Krasnow MA (2014 ). Alveolar progenitor and stem cells in lung development, renewal and cancer. Nature 507, 190–194.

    Not in our library10.1038/nature12930

  25. 25.

    Diaz Brinton R (2012 ). Minireview: translational animal models of human menopause: challenges and emerging opportunities. Endocrinology 153, 3571–3578.

    Not in our library10.1210/en.2012-1340

  26. 26.

    Donato AJ, Morgan RG, Walker AE, and Lesniewski LA (2015 ). Cellular and molecular biology of aging endothelial cells. J. Mol. Cell. Cardiol 89 (Pt B), 122–135.

    Not in our library10.1016/j.yjmcc.2015.01.021

  27. 27.

    Dong Q, Gao H, Shi Y, Zhang F, Gu X, Wu A, Wang D, Chen Y, Bandyopadhyay A, Yeh I-T, (2016 ). Aging is associated with an expansion of CD49fhi mammary stem cells that show a decline in function and increased transformation potential. Aging (Albany NY) 8, 2754–2776.

    Not in our library10.18632/aging.101082

  28. 28.

    Dos Santos CO, Dolzhenko E, Hodges E, Smith AD, and Hannon GJ (2015 ). An epigenetic memory of pregnancy in the mouse mammary gland. Cell Rep. 11, 1102–1109.

    Not in our library10.1016/j.celrep.2015.04.015

  29. 29.

    Encinas JM, Michurina TV, Peunova N, Park J-H, Tordo J, Peterson DA, Fishell G, Koulakov A, and Enikolopov G (2011 ). Division-coupled astrocytic differentiation and age-related depletion of neural stem cells in the adult hippocampus. Cell Stem Cell 8, 566–579.

    Not in our library10.1016/j.stem.2011.03.010

  30. 30.

    Fata JE, Chaudhary V, and Khokha R (2001 ). Cellular turnover in the mammary gland is correlated with systemic levels of progesterone and not 17β-estradiol during the estrous cycle. Biol. Reprod 65, 680–688.

    Not in our library10.1095/biolreprod65.3.680

  31. 31.

    Finch CE, Felicio LS, Mobbs CV, and Nelson JF (1984 ). Ovarian and steroidal influences on neuroendocrine aging processes in female rodents. Endocr. Rev 5, 467–497.

    Not in our library10.1210/edrv-5-4-467

  32. 32.

    Flurkey K, Currer JM, and Harrison DE (2007 ). The Mouse in Biomedical Research: Normative Biology, Husbandry, and ModelsSecond Edition, Volume 3 (Elsevier).

    Not in our library

  33. 33.

    Franklin RA, Liao W, Sarkar A, Kim MV, Bivona MR, Liu K, Pamer EG, and Li MO (2014 ). The cellular and molecular origin of tumor-associated macrophages. Science 344, 921–925.

    Not in our library10.1126/science.1252510

  34. 34.

    Frantz C, Stewart KM, and Weaver VM (2010 ). The extracellular matrix at a glance. J. Cell Sci 123, 4195–4200.

    Not in our library10.1242/jcs.023820

  35. 35.

    Froimchuk E, Jang Y, and Ge K (2017 ). Histone H3 lysine 4 methyltransferase KMT2D. Gene 627, 337–342.

    Not in our library10.1016/j.gene.2017.06.056

  36. 36.

    Fu NY, Nolan E, Lindeman GJ, and Visvader JE (2020 ). Stem cells and the differentiation hierarchy in mammary gland development. Physiol. Rev 100, 489–523.

    Not in our library10.1152/physrev.00040.2018

  37. 37.

    Gannon PO, Godin-Ethier J, Hassler M, Delvoye N, Aversa M, Poisson AO, Péant B, Alam Fahmy M, Saad F, Lapointe R, and Mes-Masson AM (2010 ). Androgen-regulated expression of arginase 1, arginase 2 and interleukin-8 in human prostate cancer. PLoS ONE 5, e12107.

    Not in our library10.1371/journal.pone.0012107

  38. 38.

    Gantt S, Gervassi A, Jaspan H, and Horton H (2014 ). The role of myeloid-derived suppressor cells in immune ontogeny. Front. Immunol 5, 387.

    Not in our library10.3389/fimmu.2014.00387

  39. 39.

    Garbe JC, Pepin F, Pelissier FA, Sputova K, Fridriksdottir AJ, Guo DE, Villadsen R, Park M, Petersen OW, Borowsky AD, (2012 ). Accumulation of multipotent progenitors with a basal differentiation bias during aging of human mammary epithelia. Cancer Res. 72, 3687–3701.

    Not in our library10.1158/0008-5472.can-12-0157

  40. 40.

    Gertig DM, Stillman IE, Byrne C, Spiegelman D, Schnitt SJ, Connolly JL, Colditz GA, and Hunter DJ (1999 ). Association of age and reproductive factors with benign breast tissue composition. Cancer Epidemiol. Biomarkers Prev 8, 873–879.

    Not in our library

All 155 references

Cited by papers we hold 2

Reads

Read by people on this page

None yet.

Checked or read by AI through naulon

None yet.

A person counts once a day per paper. We keep no cookie and no address: a reader is a hash that changes every day. Any month under five reads shows no number.

Are you an author?

Is this your paper?

Claim it to add your note and be paid when agents cite it. Free.