The Scalable Brain Atlas: Instant Web-Based Access to Public Brain Atlases and Related Content

Abstract

Full text

Its licence does not allow us to show the full text. Read it at PubMed Central:

References 50

1. 1.

   Amunts K, Lepage C, Borgeat L, Mohlberg H, Dickscheid T, Rousseau MÉ, Bludau S, Bazin PL, Lewis LB, Oros-Peusquens AM, Shah NJ, Lippert T, Zilles K, Evans AC. BigBrain: an ultrahigh-resolution 3D human brain model. Science. 2013;340(6139):1472-5.

   Not in our library10.1126/science.1235381

2. 2.
   CoCoMac 2.0 and the future of tract-tracing databases · 2012

   No notice
3. 3.

   Bezgin G, Reid AT, Schubert D, Kötter R. Matching spatial with ontological brain regions using Java tools for visualization, database access, and integrated data analysis. Neuroinformatics. 2009;7:7-22.

   Not in our library10.1007/s12021-008-9039-5

4. 4.

   Bowden DM, Song E, Kosheleva J, Dubach MF. NeuroNames: an ontology for the BrainInfo portal to neuroscience on the web. Neuroinformatics. 2012;10(1):97-114.

   Not in our library10.1007/s12021-011-9128-8

5. 5.

   Bray, T., Paoli, J., Sperberg-McQueen, C. M., Maler, E., & Yergeau, F. (Eds.) (2008) “Extensible Markup Language (XML) 1.0”, W3C recommendation http://www.w3.org/TR/2008/REC-xml-20081126/.

   Not in our library

6. 6.

   Brodmann. (1909). “Vergleichende Lokalisationslehre der Grosshirnde” Barth, Leipzig.

   Not in our library

7. 7.

   Calabrese E, Badea A, Watson C, Johnson GA. A quantitative magnetic resonance histology atlas of postnatal rat brain development with regional estimates of growth and variability. NeuroImage. 2013;71:196-206.

   Not in our library10.1016/j.neuroimage.2013.01.017

8. 8.

   Chlodzinska, N., Majka, P., Banasik, T., Djavadian, R. L., Weglarz, W. P., Wójcik, D. K., & Turlejski, K. (2013). Delineation of brain structures in the Monodelphis domestica opossum brain. 11th International Congress of the Polish Neuroscience Society, Poznań, Poland.

   Not in our library

9. 9.

   Cox, R. W., Ashburner, J. R. W.,Breman, H., Fissell, F., Haselgrove, C., Holmes, C. J., Lancaster, J. L., Rex, D. E., Smith, S. M., Woodward, J. B., & Strother, S. C. (2004). “A (sort of) new image data format standard: NiFTI-1”, poster presented at the OHBM meeting in Budapest, Hungary.

   Not in our library

10. 10.

    Dahlström, E., Dengler, P., Grasso, A., Lilley, C., McCormack, C., Schepers, D. & Watt, J. (Eds.) (2011). Scalable Vector Graphics (SVG) 1.1 (Second Edition), http://www.w3.org/TR/2011/REC-SVG11-20110816/.

    Not in our library

11. 11.

    Dong, H. W. (2008). “The Allen Reference Atlas: A Digital Color Brain Atlas of the C57BL/6J Male Mouse”, Wiley.

    Not in our library

12. 12.

    Dubach, M. F., & Bowden, D. M. (2009). “BrainInfo online 3D macaque brain atlas: a database in the shape of a brain,” in Society for Neuroscience Annual Meeting, Abstract No. 199.5, Chicago, IL.

    Not in our library

13. 13.

    ECMA-262 (2011) “ECMAScript Language Specification 5.1 edition”, june 2011. http://www.ecma-international.org/publications/files/ECMA-ST/Ecma-262.pdf.

    Not in our library

14. 14.

    Eickhoff SB, Stephan KE, Mohlberg H, Grefkes C, Fink GR, Amunts K, Zilles K. A new SPM toolbox for combining probabilistic cytoarchitectonic maps and functional imaging data. NeuroImage. 2005;25(4):1325-35.

    Not in our library10.1016/j.neuroimage.2004.12.034

15. 15.

    Felleman DJ, Van Essen DC. Distributed hierarchical processing in the primate cerebral cortex. Cerebral Cortex. 1991;1(1):1-47.

    Not in our library10.1093/cercor/1.1.1

16. 16.

    Gardner D, Akil H, Ascoli GA, Bowden DM, Bug W, Donohue DE, Goldberg DH, Grafstein B, Grethe JS, Gupta A, Halavi M, Kennedy DN, Marenco L, Martone ME, Miller PL, Müller HM, Robert A, Shepherd GM, Sternberg PW, Van Essen DC, Williams RW. The neuroscience information framework: a data and knowledge environment for neuroscience. Neuroinformatics. 2008;6(3):149-60.

    Not in our library10.1007/s12021-008-9024-z

17. 17.

    Glasser MF, Van Essen DC. Mapping human cortical areas in vivo based on myelin content as revealed by T1- and T2-weighted MRI. Journal of Neuroscience. 2011;31(32):11597-11616.

    Not in our library10.1523/jneurosci.2180-11.2011

18. 18.

    Gustafson C, Bug WJ, Nissanov J. NeuroTerrain–a client-server system for browsing 3D biomedical image data sets. BMC Bioinformatics. 2007;8:40.

    Not in our library10.1186/1471-2105-8-40

19. 19.

    Hawrylycz, M., Baldock, R. A., Burger, A., Hashikawa, T., Johnson, G. A., Martone, M., Ng, L., Lau, C., Larson, S. D., Nissanov, J., Puelles, L., Ruffins, S., Verbeek, F., Zaslavsky, I., & Boline, J. (2011). Digital atlasing and standardization in the mouse brain. PLoS Comput Biol 7(2). doi:10.1371/journal.pcbi.1001065.

    Not in our library10.1371/journal.pcbi.1001065

20. 20.

    Hjornevik, T., Leergaard, T. B., Darine, D., Moldestad, O., Dale, A. M., Willoch, F., & Bjaalie, J. G. (2007) “Three-Dimensional Atlas System for Mouse and Rat Brain Imaging Data”. Front Neuroinformatics, 1(4). doi: 10.3389/neuro.11.004.2007.

    Not in our library10.3389/neuro.11.004.2007

21. 21.

    Johnson GA, Badea A, Brandenburg J, Cofer G, Fubara B, Liu S, Nissanov J. Waxholm space: an image-based reference for coordinating mouse brain research. NeuroImage. 2010;53(2):365-72.

    Not in our library10.1016/j.neuroimage.2010.06.067

22. 22.

    Kohli, D., Majka, P., & Bakker, R. (2014). “Mind the gap – vectorization of brainatlases.” https://github.com/INCF/Vectorization-of-brain-atlases.

    Not in our library

23. 23.

    Kötter R. Online retrieval, processing, and visualization of primate connectivity data from the CoCoMac database. Neuroinformatics. 2004;2:127-144.

    Not in our library10.1385/ni:2:2:127

24. 24.

    Kötter R, Wanke E. Mapping brains without coordinates. Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences. 2005;360(1456):751-66.

    Not in our library10.1098/rstb.2005.1625

25. 25.
    NeuroLex.org: An online framework for neuroscience knowledge · 2013

    Not checked
26. 26.

    Lee D, Ruffins S, Ng Q, Sane N, Anderson S, Toga AW. MBAT: a scalable informatics system for unifying digital atlasing workflows. BMC Bioinformatics. 2010;11:608.

    Not in our library10.1186/1471-2105-11-608

27. 27.

    Lewis, J.W., Van Essen D.C.(2000). Mapping of architectonic subdivisions in the macaque monkey, with emphasis on parieto-occipital cortex. J Comp Neurol. 4;428(1):79–111. doi:10.1002/1096-9861(20001204)428:1%3C79::AID-CNE7%3E3.0.CO;2-Q

    Not in our library10.1002/1096-9861(20001204)428:1<79::aid-cne7>3.0.co;2-q

28. 28.

    Majka P, Kublik E, Furga G, Wójcik DK. Common atlas format and 3D brain atlas reconstructor: infrastructure for constructing 3D brain atlases. Neuroinformatics. 2012;10(2):181-97.

    Not in our library10.1007/s12021-011-9138-6

29. 29.

    Majka, P., Chlodzinska, N., Banasik, T., Djavadian, R. L., Węglarz, W. P., Turlejski, K., & Wójcik, D. K. (2013a) “Multimodal stereotactic template of the gray short-tailed opossum’s brain” Frontiers conf. abstract Neuroinformatics. doi:10.3389/conf.fninf.2013.09.00021.

    Not in our library10.1007/s00429-017-1540-x

30. 30.

    Majka P, Kowalski JM, Chlodzinska N, Wójcik DK. 3D brain atlas reconstructor service–online repository of three-dimensional models of brain structures. Neuroinformatics. 2013;11(4):507-18.

    Not in our library10.1007/s12021-013-9199-9

31. 31.

    Markov NT, Misery P, Falchier A, Lamy C, Vezolia J, Quilodran R, Giroud P, Gariel MA, Ercsey-Ravasz MM, Pilaz LJ, Huissoud C, Barone P, Dehay C, Toroczkai Z, Van Essen DC, Kennedy H, Knoblauch K. Weight consistency specifies regularities of cortical networks. Cerebral Cortex. 2011;21:1254-1272.

    Not in our library10.1093/cercor/bhq201

32. 32.

    Markov NT, Ercsey-Ravasz MM, Ribeiro Gomes AR, Lamy C, Magrou L, Vezoli J, Misery P, Falchier A, Quilodran R, Gariel MA, Sallet J, Gamanut R, Huissoud C, Clavagnier S, Giroud P, Sappey-Marinier D, Barone P, Dehay C, Toroczkai Z, Knoblauch K, Van Essen DC, Kennedy H. A weighted and directed interareal connectivity matrix for macaque cerebral cortex. Cerebral Cortex. 2012;24(1):17-36.

    Not in our library10.1093/cercor/bhs270

33. 33.

    Mohlberg, H., Eickhoff, S. B., Schleicher, A., Zilles, K., & Amunts, K. (2012). “A new processing pipeline and release of cytoarchitectonic probabilistic maps – JuBrain”, OHBM 2012, Peking, China.

    Not in our library

34. 34.

    Papp EA, Leergaard TB, Calabrese E, Johnson GA, Bjaalie JG. Waxholm space atlas of the Sprague Dawley rat brain. NeuroImage. 2014;97:374-386.

    Not in our library10.1016/j.neuroimage.2014.04.001

35. 35.

    Paxinos, G., Huang, X.-F., & Toga, A. W. (2000). “The Rhesus Monkey Brain in Stereotaxic Coordinates” Academic Press.

    Not in our library

36. 36.

    Paxinos, G., Watson, C., Petrides, M., Rosa, M., & Tokuno, H. (2012) “The Marmoset Brain in Stereotaxic Coordinates.” Academic Press.

    Not in our library

37. 37.

    Puelles L, Harrison M, Paxinos G, Watson C. A developmental ontology for the mammalian brain based on the prosomeric model. Trends in Neurosciences. 2013;36(10):570-8.

    Not in our library10.1016/j.tins.2013.06.004

38. 38.

    Raggett, D., Le Hors, A. (Eds.) (1999). “HTML 4.01 Specification”, W3C recommendation http://www.w3.org/TR/1999/REC-html401-19991224/.

    Not in our library

39. 39.

    Rohlfing T, Zahr NM, Sullivan EV, Pfefferbaum A. The SRI24 multichannel atlas of normal adult human brain structure. Human Brain Mapping. 2010;31(5):798-819.

    Not in our library10.1002/hbm.20906

40. 40.

    Rumple, A., McMurray, M., Johns, J., Lauder, J., Makam, P., Radcliffe, M., & Oguz, I. (2013) “3-dimensional diffusion tensor imaging (DTI) atlas of the rat brain.” PLoS One 8(7). doi:10.1371/journal.pone.0067334

    Not in our library10.1371/journal.pone.0067334

Cited by papers we hold 10

• Axonal α7* nicotinic acetylcholine receptors modulate glutamatergic signaling and synaptic vesicle organization in ventral hippocampal projections · 2022
  Not checked
• The essential role of transcription factor Pitx3 in preventing mesodiencephalic dopaminergic neurodegeneration and maintaining neuronal subtype identities during aging · 2021
  Not checked
• Animal Functional Magnetic Resonance Imaging: Trends and Path Toward Standardization · 2020
  Not checked
• Role of Nuclear Imaging to Understand the Neural Substrates of Brain Disorders in Laboratory Animals: Current Status and Future Prospects · 2020
  Not checked
• Enhanced and unified anatomical labeling for a common mouse brain atlas · 2019
  No notice
• Layer-Wise Relevance Propagation for Explaining Deep Neural Network Decisions in MRI-Based Alzheimer's Disease Classification · 2019
  No notice
• Spatial registration of serial microscopic brain images to three-dimensional reference atlases with the QuickNII tool · 2019
  No notice
• Reconciling persistent and dynamic hypotheses of working memory coding in prefrontal cortex · 2018
  No notice
• Top-Down Control of Visual Attention by the Prefrontal Cortex. Functional Specialization and Long-Range Interactions · 2017
  No notice
• Flexible, Penetrating Brain Probes Enabled by Advances in Polymer Microfabrication · 2016
  No notice

Reads

A person counts once a day per paper. We keep no cookie and no address: a reader is a hash that changes every day. Any month under five reads shows no number.